BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475727
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66235.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 741 0.0
> AT1G66235.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G24380.1);
Has 283 Blast hits to 282 proteins in 34 species: Archae -
0; Bacteria - 19; Metazoa - 15; Fungi - 0; Plants - 234; Viruses
- 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:24683006-24683874
REVERSE LENGTH=798
Length=798
Score = 741 bits (401), Expect = 0.0
Identities = 516/571 (90%), Gaps = 9/571 (2%)
Strand=Plus/Plus
Query 1 TTCAATCAAGCGAAAGAAATGCTAATGCAAGATAAAAATTTCAAATCTGGTTGGAAATTT 60
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 229 TTCAATCAAGCAAAAGAAATGCTAATGCAAGATAAACATTTCAAATCTGGTTGGAAATTT 288
Query 61 GATCATGTATGGAACATTACTAAAAACTTCGAAAAATTTAAAGATGGTGCTACTCCGGCT 120
||||||||||||||||||| || |||||| ||||| ||||||||||||||||||| |||
Sbjct 289 GATCATGTATGGAACATTATTAGAAACTTTGAAAAGTTTAAAGATGGTGCTACTCAAGCT 348
Query 121 AGAAAAGTCTCATATCTATGCGGTTTCGAAAATCCTACCCCCGATTCTGTTTCACAAACG 180
| |||||||| | |||||||||| || ||||||||||||| |||||||||||||||| ||
Sbjct 349 AAAAAAGTCTTAAATCTATGCGGATTAGAAAATCCTACCCTCGATTCTGTTTCACAAGCG 408
Query 181 TCTCCA-GATCTGTCCTCATTTTCTCTTAACTTAGATGACAAAGATGACACTATTGGCGG 239
||| || | || || ||||||||||||||||||||||| ||||||||| |||||| |
Sbjct 409 TCTTCAGGTTC-GTTTTCATTTTCTCTTAACTTAGATGATGAAGATGACATTATTGGAAG 467
Query 240 ATCTCCTTCTGAACGACCAATTGGAGTGAAACAA-TTAAAATTGAAAAGAAAAAACGATG 298
|||||| | | ||||||||||| |||||||| || | |||||||||||| ||||| |||
Sbjct 468 ATCTCCATATCAACGACCAATTAGAGTGAAA-AAGTCAAAATTGAAAAG-AAAAA--ATG 523
Query 299 ATCAAACAAGGGATGTTATCAAAACATTGGAAGAAGGGAATAAACAACTCGTGGAGCAAT 358
|||||| | |||||||||||| || || ||||||||||||||||||||| |||||||||
Sbjct 524 ATCAAATATTGGATGTTATCAAGACTTTCGAAGAAGGGAATAAACAACTCATGGAGCAAT 583
Query 359 TAAAAAAGACAAGTGCACAAAGACAACAATATTTGGAGATGCAAAGTAAGAGTTTAGCAT 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TAAAGAAGACAAGTGCACAAAGACAACAATATTTGGAGATGCAAAGTAAGAGTTTAGCAT 643
Query 419 TGAAAGAACTAAAAGAAGAAAACAAAGTTCTATATCGAGACTTAAATTCCATAGAAGATC 478
||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 644 TGAGAGAACAAAAAGAAGAAAACAAAGTTTTATATCGAAACTTAAATTCCATAGAAGATC 703
Query 479 CAAATCTTCGTGCATATCTTCAATCTGAACAAGCAAAAATCTTAAAGAAAA-GACTTGAT 537
||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 704 CAAATCTCCGTGCATATCTTCAATCTGAACAAGCAAAAATCTTAA-GAAAAAGACTTGAT 762
Query 538 CAACAAGCTTCGTCGGCATCTACTTCATTTG 568
||||||||| | ||| |||||||||| ||||
Sbjct 763 CAACAAGCTGCATCGACATCTACTTCCTTTG 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27277141821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5