BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475729
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66245.1 | Symbols: | unknown protein; Has 390 Blast hits t... 664 0.0
> AT1G66245.1 | Symbols: | unknown protein; Has 390 Blast hits
to 336 proteins in 78 species: Archae - 0; Bacteria - 22; Metazoa
- 81; Fungi - 35; Plants - 39; Viruses - 2; Other Eukaryotes
- 211 (source: NCBI BLink). | chr1:24690444-24691307
FORWARD LENGTH=864
Length=864
Score = 664 bits (359), Expect = 0.0
Identities = 439/477 (92%), Gaps = 7/477 (1%)
Strand=Plus/Plus
Query 363 TGAAGATTTGATTAGGGGTCGTGATCGTATGGAAGGTTCCATTAGGAACGGTACTCGTAA 422
||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||
Sbjct 393 TGAAGATTTGATTAGGGGTCGTGATCGTATGGAAGGTTCCAATAGGAATGGTGCTCGTAA 452
Query 423 TCGTGTGGACCAGCTCGAAGGTTCTAGCAAAAAGGGTCATATTTGTGAGCGTGAAGACAA 482
||||||||||||||| ||||||| ||||||||| ||| | | | ||| ||||| ||
Sbjct 453 TCGTGTGGACCAGCTTGAAGGTTTTAGCAAAAACGGTGAGAAACATCAGCATGAAG--AA 510
Query 483 TAATACTATTAAAACAAGCGATCAAATAGATCAATCAGAAAGATCAACTAAAAGTCCTTC 542
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 511 -AATACTGTTAAAACAAGCGATCAAATAGATCAATCAGAAAAATCAACTAAAAGTCCATC 569
Query 543 TGATTTTGCTTCaaaaaaaGATTATCTTGATTGGATTGAATACGTGGAAGGATCGAATCA 602
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 570 TGATTTTGCTTCAAAAAAAGATTATCTTGATTGGATTGAATATGTGGAAGGATCGAATCA 629
Query 603 TCATTGTTTCGATCGATCGGAAGATTCCGGAAAACCTTATATAAGAGAGGATATCGATCA 662
|||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||
Sbjct 630 TCATTGTTTCGATCGATCCGAAGATTCCGAAAAATCTTATATAAGAGAGGATATCGATCA 689
Query 663 TGAC-CAGATAAGCGTTGGAATATCAGAAGGATCCATAGAGGGGAACAATGATGAGAG-C 720
|||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 690 TGACGC-GATAAGCGTTGGGATATCAGAAGGATCCATAGAGGGGAACAACGATGAGAGTC 748
Query 721 TTATTACTGAAGAGCTCTAAGTATAGAAAAAATGAGAAATTTGAAGATTCGAAAGGTTAT 780
| |||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 749 T-ATTACTCAAGAGTTCTAAGTATAGAAAAAACGAGAAATTTGAAGATTCAAAAGGTTAT 807
Query 781 AAGAAAGGAAAAGGTAGCAAGGCGAAAGATACATTGAAATGTCAAATAGTTGACTAA 837
||||||||||||||||||||||| |||||| || ||||||||||| |||||||||||
Sbjct 808 AAGAAAGGAAAAGGTAGCAAGGCTAAAGATTCACTGAAATGTCAATTAGTTGACTAA 864
Score = 547 bits (296), Expect = 5e-155
Identities = 338/357 (95%), Gaps = 8/357 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAAAATTACCAAAAAGCTATCGATGAAATACGTGAAGCTCCACAAGCaaaaaaaG 60
|||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAAGAAGATTACAAAAAAGCTATCAATGAAATACGTGAAGCTCCATAAGCAAAAAAAG 60
Query 61 CTCCGCCAAGACGGGTCCATGAAGTCAGAGGAAGACGGTGGAGAGCCTTTCCGGGAATCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCCGCCAAGACGGGTCCATGAAGTCAGAGGAAGACGGTGGAGAGCCTTTCCGGGAATCT 120
Query 121 CATTCGCCGGATAATGCGGAAAGTAATGAAACAAAGGAGACTCCTAAGGTTACAAAGATT 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATTCGCCGGATTATGCGGAAAGTAATGAAACAAAGGAGACTCCTAAGGTTACAAAGATT 180
Query 181 ATGGAGTCCATGCATCGTAAGCTAATGCTAAAAGATAAGGCAAATAAAAAGAAAATTCAC 240
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 ATGGAGTCCATGCATCGTAAGCTGATGCTAAAAGACAAGGCAAATAAAAAGAAAATTCAC 240
Query 241 GTGGACGGTCACGATCAATCCCAAATGTCTA-AACGTTCGGTTAGGAATGGTGGCCGTGA 299
||||||| | ||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 241 GTGGACG---A---TCAATCCCAAATGTC-AGAACGTTCGGTTAGGAATGGTGGTCGTGA 293
Query 300 TCGCAAGGACCAGCTTGATGAAGACTCGGTTAGAAACACGAATCGTGATGGTACGGA 356
||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 294 TCGCAAGGACCAGCTTGATGAAGGCTCGGTTAGAAACATGAATCGCGATGGTACGGA 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5