BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475739
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66370.1 | Symbols: MYB113, AtMYB113 | myb domain protein 11... 811 0.0
AT1G66390.1 | Symbols: ATMYB90, PAP2, MYB90 | myb domain protei... 723 0.0
AT1G56650.1 | Symbols: PAP1, MYB75, SIAA1, ATMYB75 | production... 597 5e-170
AT1G66380.1 | Symbols: MYB114, AtMYB114 | myb domain protein 11... 473 8e-133
> AT1G66370.1 | Symbols: MYB113, AtMYB113 | myb domain protein
113 | chr1:24753634-24754604 FORWARD LENGTH=741
Length=741
Score = 811 bits (439), Expect = 0.0
Identities = 566/626 (90%), Gaps = 14/626 (2%)
Strand=Plus/Plus
Query 15 CAAAGGTTTGAGAAAAGGTACATGGACTGCTGAAGAAGATAGTCTCTTGAGGCAGTGCAT 74
|||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||||
Sbjct 15 CAAAGGGTTGAGAAAAGGTACATGGACTACTGAAGAAGATATTCTCTTGAGGCAATGCAT 74
Query 75 TGATAAGTATGGAGAAAGCAAATGGCA-CCAGGTTCCTTTAAGAGCTGGGCTAAATCGGT 133
|||||||||||||||| |||||||||| | | |||||||||||| |||| || |||||||
Sbjct 75 TGATAAGTATGGAGAAGGCAAATGGCATCGA-GTTCCTTTAAGAACTGGTCTCAATCGGT 133
Query 134 GCAGAAAGAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAGTATTAAGAGAGGAA 193
|| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 134 GCCGAAAGAGTTGTAGACTTAGATGGTTGAATTATTTGAAGCCAAGTATTAAGAGAGGAA 193
Query 194 AATTTTGCTCTGATGAAGTAGACCTTCTTCTTCGCCTGCACAAGCTTCTAGGAAATAGAT 253
|| | ||||| |||||||| || ||| |||||||||| || || |||||||||||||| |
Sbjct 194 AACTCTGCTCCGATGAAGTTGATCTTGTTCTTCGCCTTCATAAACTTCTAGGAAATAGGT 253
Query 254 GGTCCTTGATTGCTGGTCGATTGCCTGGTCGGACTGCTAATGATATCAAGAATTATTGGA 313
|||||||||| |||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct 254 GGTCCTTGATCGCTGGTAGATTGCCTGGTCGGACTGCTAATGATGTCAAGAATTACTGGA 313
Query 314 ACACCCATTTGAGTAAGAAGCATGATGAACTATGTC-GTAAGACGAAGATGATAAACAGA 372
|||| ||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |
Sbjct 314 ACACTCATTTGAGTAAGAAGCACGATGAACGATG-CTGTAAGACGAAGATGATAAACAAA 372
Query 373 AACATTACTTCCCATCCTACTACTTCGGCCCAAAAAATCGATGTTTTAAAGCCTCGACCT 432
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 373 AACATTACTTCTCATCCTACTTCATCGGCCCAAAAAATCGATGTTTTAAAGCCTCGGCCT 432
Query 433 CGATCCTTCTCCGATAAAAATAGTTGCAACGATCTCAATGTCCTGCCAAAAGTTGACGTA 492
||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 433 CGATCCTTCTCCGATAAAAATAGTTGCAACGATGTCAATATCTTGCCAAAAGTTGACGTT 492
Query 493 GTTCCTT--CATGGTTTGGACTCAACAACAATAATGTTTGTGAAAGGAGTATCACATGTA 550
||||||| ||| || ||||||||||||||| ||||||||||||| ||||| |||||||
Sbjct 493 GTTCCTTTACATC-TT-GGACTCAACAACAATTATGTTTGTGAAAGTAGTATTACATGTA 550
Query 551 ACAAAGATGAGCAGAAAGATAAGCTTACTAATA--A-TCTAATGGATGGAGATAATACT- 606
||||||||||||| ||||||||||||| ||||| | |||| ||||||||||||||| |
Sbjct 551 ACAAAGATGAGCAAAAAGATAAGCTTATTAATATTAATCTATTGGATGGAGATAATA-TG 609
Query 607 TGGTGGGAGAGTTTACTGGAGG-AGA 631
|||||||| ||||||||||||| |||
Sbjct 610 TGGTGGGAAAGTTTACTGGAGGCAGA 635
> AT1G66390.1 | Symbols: ATMYB90, PAP2, MYB90 | myb domain protein
90 | chr1:24763957-24765541 FORWARD LENGTH=986
Length=986
Score = 723 bits (391), Expect = 0.0
Identities = 629/744 (85%), Gaps = 16/744 (2%)
Strand=Plus/Plus
Query 15 CAAAGGTTTGAGAAAAGGTACATGGACTGCTGAAGAAGATAGTCTCTTGAGGC-AGTGCA 73
|||||| ||||| |||||| ||||||||||||||||||||||||||||||||| | || |
Sbjct 110 CAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTCTTGAGGCTA-TGTA 168
Query 74 TTGATAAGTATGGAGAAAGCAAATGGCACCAGGTTCCTTTAAGAGCTGGGCTAAATCGGT 133
||||||||||||||||| |||||||||| || |||||||| ||||||||||||||||| |
Sbjct 169 TTGATAAGTATGGAGAAGGCAAATGGCATCAAGTTCCTTTGAGAGCTGGGCTAAATCGAT 228
Query 134 GCAGAAAGAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAGTATTAAGAGAGGAA 193
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 229 GCAGAAAGAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAGTATCAAGAGAGGAA 288
Query 194 AATTTTGCTCTGATGAAGTAGACCTTCTTCTTCGCCTGCACAAGCTTCTAGGAAATAGAT 253
| || || ||||||||| || |||||||||||||| || ||||||||||||||||| |
Sbjct 289 GACTTAGCAATGATGAAGTTGATCTTCTTCTTCGCCTTCATAAGCTTCTAGGAAATAGGT 348
Query 254 GGTCCTTGATTGCTGGTCGATTGCCTGGTCGGACTGCTAATGATATCAAGAATTATTGGA 313
|||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||
Sbjct 349 GGTCCTTGATTGCTGGTCGATTGCCTGGTCGGACCGCTAATGATGTCAAAAATTACTGGA 408
Query 314 ACACCCATTTGAGTAAGAAGCATGA-TGAACTATGTCGTAAGACGAAGATGATAAACAGA 372
|||||||| ||||||| || ||||| | | ||| ||||| | || |||| ||| | |
Sbjct 409 ACACCCATCTGAGTAAAAAACATGAGTCTTCG-TGTTGTAAGTCTAAAATGAAAAAGAAA 467
Query 373 AACATTACTTCCCATCCTACTACTTCGGCCCAAAAAATCGATGTTTTAAAGCCTCGACCT 432
||||||| ||||| |||||| || ||| ||||||||||| |||||| ||||||||||||
Sbjct 468 AACATTATTTCCCCTCCTACAACACCGGTCCAAAAAATCGGTGTTTTTAAGCCTCGACCT 527
Query 433 CGATCCTTCTCCGATAAAAATAGTTGCAACGATCTCAATG-TCCTGCCAAAAGTTGACGT 491
||||||||||| | ||| ||| |||||| | ||||||||| || ||||| ||||||| |
Sbjct 528 CGATCCTTCTCTGTTAACAATGGTTGCAGCCATCTCAATGGTC-TGCCAGAAGTTGATTT 586
Query 492 AGTTCCTTCATGGTTTGGACTCAACAACAATAATGTTTGTGAAAGGAGTATCACATGTAA 551
| |||||||||| |||||||||| || |||||||||||||||| ||||||||||||||
Sbjct 587 AATTCCTTCATGCCTTGGACTCAAGAAAAATAATGTTTGTGAAAATAGTATCACATGTAA 646
Query 552 CAAAGATGA-GCAGAAAGATAAGCTTACT-AATAATCTAATGGATGGAGATAATACT-TG 608
||||||||| | |||||||| | || | |||||||||||| |||||||||||| | ||
Sbjct 647 CAAAGATGATG-AGAAAGATGATTTTG-TGAATAATCTAATGAATGGAGATAATA-TGTG 703
Query 609 GTGGGAGAGTTTACTGGAGGAGAGTCAAGAAGCAGATTT-ATTCGGTCCAGAAG-GTACG 666
|| ||||| |||||||| ||| | |||||||| ||| ||| | ||| |||| | |||
Sbjct 704 GTTGGAGAATTTACTGGGGGAAAACCAAGAAGCTGATGCGATT-GTTCCTGAAGCG-ACG 761
Query 667 ATAACAGAAAAAGGAGAGACCTCGGCGTTTGACGTTTCGAAACTTTGGGGTTTGTTTCAT 726
| | | ||| | || | || | ||||||||||||| | |||||||| || ||||| ||
Sbjct 762 ACAGCTGAACATGGGGCCACTTTGGCGTTTGACGTTGAGCAACTTTGGAGTCTGTTTGAT 821
Query 727 GAAGAGACGGTGGAACTAAATTAG 750
| |||||| || ||||| |||||
Sbjct 822 GGAGAGACTGTTGAACTTGATTAG 845
> AT1G56650.1 | Symbols: PAP1, MYB75, SIAA1, ATMYB75 | production
of anthocyanin pigment 1 | chr1:21233595-21235137 REVERSE
LENGTH=914
Length=914
Score = 597 bits (323), Expect = 5e-170
Identities = 607/740 (82%), Gaps = 35/740 (5%)
Strand=Plus/Plus
Query 15 CAAAGGTTTGAGAAAAGGTACATGGACTGCTGAAGAAGATAGTCTCTTGAGGCAGTGCAT 74
|||||| || |||||||| | |||||| |||||||||||||||||||||| ||||||||
Sbjct 63 CAAAGGGCTGCGAAAAGGTGCTTGGACTACTGAAGAAGATAGTCTCTTGAGACAGTGCAT 122
Query 75 TGATAAGTATGGAGAAAGCAAATGGCACCAGGTTCCTTTAAGAGCTGGGCTAAATCGGTG 134
| |||||||||||||| ||||||||||||| |||||| |||||||||||||||| |||||
Sbjct 123 TAATAAGTATGGAGAAGGCAAATGGCACCAAGTTCCTGTAAGAGCTGGGCTAAACCGGTG 182
Query 135 CA-GAAAGAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAGTATTAAGAGAGGAA 193
|| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 183 CAGGAAA-AGTTGTAGATTAAGATGGTTGAACTATTTGAAGCCAAGTATCAAGAGAGGAA 241
Query 194 AATTTTGCTCTGATGAAGTAGACCTTCTTCTTCGCCTGCACAAGCTTCTAGGAAATAGAT 253
|| || ||||||||||||| || |||||||||||||| || | ||||||||| ||||| |
Sbjct 242 AACTTAGCTCTGATGAAGTCGATCTTCTTCTTCGCCTTCATAGGCTTCTAGGGAATAGGT 301
Query 254 GGTCCTTGATTGCTGGTCGATTGCCTGGTCGGACTGCTAATGATATCAAGAATTATTGGA 313
|||| || |||||||| |||| ||||||||||| || ||||| |||||||||| ||||
Sbjct 302 GGTCTTTAATTGCTGGAAGATTACCTGGTCGGACCGCAAATGACGTCAAGAATTACTGGA 361
Query 314 ACACCCATTTGAGTAAGAAGCATGATGAACTATGTCGTAAGACGAAGATGATAAACAGAA 373
|||| ||| |||||||||| ||||| | | ||| |||||| ||||||| ||| |||
Sbjct 362 ACACTCATCTGAGTAAGAAACATGA--ACCG-TGTTGTAAGATAAAGATGAAAAAGAGAG 418
Query 374 ACATTACTTCCCAT-CCTACTACTTCGGCCC-AAAAAATCGATGTTT-TAAAGCCTCGAC 430
||||||| ||||| ||||| || |||| | |||||| | |||||| ||| ||||||||
Sbjct 419 ACATTACG-CCCATTCCTACAACACCGGCACTAAAAAA-CAATGTTTATAA-GCCTCGAC 475
Query 431 CTCGATCCTTCTCCGATAAAAAT-AGTTGCAACGATCTCAATGTCCTGCCAAAAGTTGAC 489
||||||||||| | | ||| || | | ||||| ||||||||| || ||||||||||||
Sbjct 476 CTCGATCCTTCACAGTTAACAACGACT-GCAACCATCTCAATGCCCCACCAAAAGTTGAC 534
Query 490 GT-AGTTCCTTCATGGTTTGGACTCAACAACAATAATGTTTGTGA-AAGGAGTATCACAT 547
|| | | ||| |||| ||||||| |||| ||||||||||||||| || ||||||| ||
Sbjct 535 GTTAAT-CCTCCATGCCTTGGACTTAACATCAATAATGTTTGTGACAAT-AGTATCATAT 592
Query 548 GTAACAAAGATGAGCAGAAAGAT-AAGCTTACT-AATAATCTAATGGATGGAGATAATAC 605
||||||||| || ||||||| || || | | |||||| | || |||||||||||||
Sbjct 593 ACAACAAAGATAAGAAGAAAGACCAA-CT-AGTGAATAATTTGATTGATGGAGATAATA- 649
Query 606 T-TGGTGGGAGAGTTTACTGGAGGAGAGTCAAGAAGCAGAT-TTATTCGGT-CCAGAAG- 661
| |||| |||| || || ||||| || ||||| | |||| || || ||| || ||||
Sbjct 650 TGTGGTTAGAGAAATTCCTAGAGGAAAGCCAAGAGGTAGATATT-TT-GGTTCCTGAAGC 707
Query 662 GTACGATAACAGAAAAAGGAGAGACCTCGGCGTTTGACGTT--TCGAAACTTTGGGGTTT 719
| |||| ||||||||| || || |||| ||| ||||||||| || || |||||| || |
Sbjct 708 G-ACGACAACAGAAAAGGGGGACACCTTGGCTTTTGACGTTGATC-AA-CTTTGGAGTCT 764
Query 720 GTTTC-ATGAAGAGACGGTG 738
|||| ||| |||||| |||
Sbjct 765 -TTTCGATGGAGAGACTGTG 783
> AT1G66380.1 | Symbols: MYB114, AtMYB114 | myb domain protein
114 | chr1:24757413-24758490 FORWARD LENGTH=420
Length=420
Score = 473 bits (256), Expect = 8e-133
Identities = 359/408 (88%), Gaps = 9/408 (2%)
Strand=Plus/Plus
Query 15 CAAAGGTTTGAGAAAAGGTACATGGACTGCTGAAGAAGATAGTCTCTTGAGGCAGTGCAT 74
|||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 15 CAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTCTTGAGGCAGTGTAT 74
Query 75 TGATAAGTATGGAGAAAGCAAATGGCACCAGGTTCCTTTAAGAGCTGGGCTAAATCGGTG 134
|| ||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 75 TGGTAAGTATGGAGAAGGCAAATGGCATCAAGTTCCTTTAAGAGCTGGGCTAAATCGGTG 134
Query 135 CAG-AAAGAGTTGTAGACTAAGATGGTTGAACTATTTGAAGCCAAGTATTAAGAGAGGAA 193
||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 135 CAGGAAA-AGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAGTATCAAGAGAGGAA 193
Query 194 AATTTTGCTCTGATGAAGTAGACCTTCTTCTTCGCCTGCACAAGCTTCTAGGAAATAGAT 253
||||| | ||||||||||| || ||||||||||| || || ||||||||||||||||| |
Sbjct 194 AATTTAGTTCTGATGAAGTTGATCTTCTTCTTCGTCTTCATAAGCTTCTAGGAAATAGGT 253
Query 254 GGTCCTTGATTGCTGGTCGATTGCCTGGTCGGACTGCTAATGATATCAAGAATTATTGGA 313
|||||||||||||||||||||| ||||||||||| ||||||||| ||||||| || ||||
Sbjct 254 GGTCCTTGATTGCTGGTCGATTACCTGGTCGGACCGCTAATGATGTCAAGAACTACTGGA 313
Query 314 ACACCCATTTGAGTAAGAAGCATGATGAACTATGTCGTAAGACGAAGATGATAAAC-AGA 372
|||||||| |||||||||||||||| | | ||| |||| || ||||| | ||| | |
Sbjct 314 ACACCCATCTGAGTAAGAAGCATGA--ACCG-TGTTGTAAAACTAAGATAA-AAAGGATA 369
Query 373 AACATTACTT-CCCATCCTACTACTTCGGCCCAAAAAATCGATGTTTT 419
|| |||| | ||| ||||| ||| ||||||||||| ||||| ||||
Sbjct 370 AATATTA-TAACCCCTCCTAATACACCGGCCCAAAAAGTCGATATTTT 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5