BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475742
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66400.1 | Symbols: CML23 | calmodulin like 23 | chr1:247705... 1005 0.0
> AT1G66400.1 | Symbols: CML23 | calmodulin like 23 | chr1:24770575-24771371
REVERSE LENGTH=797
Length=797
Score = 1005 bits (544), Expect = 0.0
Identities = 660/714 (92%), Gaps = 16/714 (2%)
Strand=Plus/Plus
Query 1 AAACAATGTCAAAGAACGTTTCAAGAAACTGCTTAGGTTCAATGGAAGACATCAAGAAAG 60
||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 38 AAAAAATGTCGAAGAACGTTTCGAGAAACTGCTTAGGATCAATGGAAGACATCAAGAAAG 97
Query 61 TTTTCCAACGATTCGACAAAAACAACGATGGGAAAATCTCTATCGATGAGCTTAAAGACG 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 TATTCCAACGATTCGACAAAAACAACGATGGGAAAATCTCTATCGATGAGCTTAAAGACG 157
Query 121 TGATAGGAGCTCTCTCTCCAAACGCTACGCAAGAAGAAACCAAATCTATGATGAAAGAGT 180
|||||||||||||||||||||||||| | ||||||||||||||| | |||||||||||||
Sbjct 158 TGATAGGAGCTCTCTCTCCAAACGCTTCACAAGAAGAAACCAAAGCAATGATGAAAGAGT 217
Query 181 TTGATCTTGATGGTAATGGATTCATTGATTTGGATGAATTTGTTGCTTTGTTTCAAAACA 240
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 218 TTGATCTTGACGGTAATGGTTTCATTGATTTGGATGAGTTTGTTGCTTTGTTTCAAATCA 277
Query 241 ATGATCAAAGTACCGATAGTAATGAGATTAGAGATTTGAAAGAAGCTTTTGATTTGTATG 300
||||||||||| | | | || || |||||||||||||||||||||||||||||||||||
Sbjct 278 GTGATCAAAGTAGCAACAATAGTGCGATTAGAGATTTGAAAGAAGCTTTTGATTTGTATG 337
Query 301 ATTTGGATCGTAATGGAAGAATCTCGGCGACTGAGTTACACTCGGTTATGAAGAATCTTG 360
||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 338 ATTTGGATCGTAATGGAAGGATCTCGGCTAATGAGTTACACTCGGTTATGAAGAATCTTG 397
Query 361 GTGAGAAGTGTTCGGTTCAAGATTGTCAAAGGATGATTAGTAAAGTTGATTCTGATGGTG 420
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 398 GTGAGAAGTGTTCGATTCAAGATTGTCAAAGGATGATTAATAAAGTTGATTCTGATGGTG 457
Query 421 ATGGTTGTGTTGATTTTGAAGAGTTTAAGAAGATGATGAT--T-AATGGAAATGCTTGAT 477
|||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||
Sbjct 458 ATGGTTGTGTTGATTTTGAAGAGTTTAAGAAGATGATGATGATTAATGGTAGTGCTTGAT 517
Query 478 -GAAATCGATTTAGAATTTGGGAAGATTTA-ATCCttttttt-tCTTGTAAATATCGttt 534
||| |||||||||||||||| || | | | |||| |||||| | |||||||||| || |
Sbjct 518 AGAA-TCGATTTAGAATTTGGAAA-AGTGATATCCATTTTTTGT-TTGTAAATATTGTGT 574
Query 535 ttttttatgaattggtcaatctaatcttttttaggatttaggttaattaggagtttttaa 594
||| |||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TTT---ATGATTTCGTTAATCTAATCTTTTTTAGGATTTAGGTTAATTAGGAGTTTTTAA 631
Query 595 ttttttaaggttttaTCGATTAATCTAGAAGAATCTCTATGTTGCTTCTTTAATGGCTCT 654
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TTTTTTA-GGTTTTATCGATTAATCTAGAAGAATCTCTATGTTGCTTCTTTAATGGCTCT 690
Query 655 --GACCTAATGTTAGGGAATATTGTTGATGACCT-AATTAATCGATTAATAATA 705
|||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 691 CTGACCTAATGTTAGGGAATATTGTTGATGACCTTAAATAATCGATTAACAATA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5