BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475744
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66420.1 | Symbols: | DNA-binding storekeeper protein-relat... 974 0.0
> AT1G66420.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr1:24777184-24778032 FORWARD
LENGTH=849
Length=849
Score = 974 bits (527), Expect = 0.0
Identities = 673/744 (90%), Gaps = 7/744 (1%)
Strand=Plus/Plus
Query 1 GAGGAGTTTTCTGGCAGCTCTGGCAAGGTACAGCCGTCTGAGATGAAGCGGCGGAGAGAA 60
|||||||||| |||| |||| ||||||||||| ||||||||||||||||| ||||| |||
Sbjct 109 GAGGAGTTTTGTGGCGGCTCCGGCAAGGTACAACCGTCTGAGATGAAGCGTCGGAGTGAA 168
Query 61 GGGACCTCAACGGACGTGACTTCGAAGAGAGCCAAGAAGGTTTCAGCAGAAGATGAGAAG 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 GGGACCTCAACGGACATGACTTCGAAGAGAGCCAAGAAGGTTTCAGCAGAAGATGAGAAG 228
Query 121 AAGAAGATGGGAGAATGTACaaaaaaaCAATATTTTCAAAGACTGTGGAATGAGGAAGAT 180
| ||| | |||||||| |||||||| | |||||||||||||||||||| ||||||||||
Sbjct 229 -A-AAG-TTGGAGAATGGACAAAAAACCCATATTTTCAAAGACTGTGGAGTGAGGAAGAT 285
Query 181 GAGATTGTTATGCTACAAGGAATTATAAAATTTGAAGATGTTACAGGGAAAAGTCCGTTT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 286 GAGATTGTTATGCTACAAGGAATTATTAAATTTGAAGATGTTACAGGGAAAAGTCCGTTT 345
Query 241 GACGATAGTCACGGATTTATAGAATTCGTCAAGAAATTCATTAGCTTCGAGGCTAGTGTG 300
|| ||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 346 GAGGATAGACACGGGTTTATAGAATTCGTCAAGAACTCCATTAGCTTCGAGGCTAGTGTG 405
Query 301 CACCAATACACTGGCAAGATTAGGCAATTGAAGA-G-ACTAAAAGGAACGAAAAGAAAGA 358
|| ||||||| |||||||||||| |||||||||| | | | | | | | |||||| ||||
Sbjct 406 CAACAATACATTGGCAAGATTAGCCAATTGAAGAGGAAAT-ATACG-AGGAAAAGGAAGA 463
Query 359 GCGGTTTTTCTGAAGCTCATGATCAAAAATGTTTCAAGCTTGCCAAGTCTATTTGGGGAA 418
|||||||||||||| |||||| || ||||||||||| || |||| ||||||||||||||
Sbjct 464 ACGGTTTTTCTGAAGGTCATGAACAGAAATGTTTCAAACTGGCCATGTCTATTTGGGGAA 523
Query 419 CTAAAGAAACGGCTAAGAAGACGGACTTGTTCTCTTCACCTAATGGTAAAATGGTTGAAG 478
||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| |||
Sbjct 524 CTAAAGAAACGTCTAAGAAGACGGACTTGTGCTCTTCACCTAAAGGTAAAAAAGTTAAAG 583
Query 479 AGGATGATGTAGATGTGACCAACTCTGATTGGTTTGAGAATTCGTTTCTACTTCCCTTAA 538
| || |||| ||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 584 AAGAAGATGGAGATGTGACAAACTCTGATTGGTTTGAGAATTCGTTTCTACTTCCATCAA 643
Query 539 TTGAGAGTCTTGGTGTGGATTCCGTGAAACATAAATGGAGTGTTGTGCCTATGGAGGCTA 598
|||||||||||||||||||||| || |||| |||||||| |||||||||||||||| ||
Sbjct 644 TTGAGAGTCTTGGTGTGGATTCGGTTAAACGTAAATGGAATGTTGTGCCTATGGAGTTTA 703
Query 599 AGAAGAAAATTGAAGAGAGGTTGGAGTTGTTGGAGGCTGATGAAGGTGAATGTAAGAAAA 658
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 704 AGAAGAAAATTGAAGAGAGGTTGGAGTTGTTGGAGGCTGATGAAAGTGAATGCAAGAAAA 763
Query 659 TTAAAGAGACGTTGAAGATTAAAAAGCGTGAATGCTTGATACAAAAGACTGACTTTTTGA 718
| |||||| ||||||| ||||||| | |||||| ||| |||||||||| || ||||||
Sbjct 764 TGGAAGAGATGTTGAAGGTTAAAAATAGCGAATGCGTGAAACAAAAGACTAACCTTTTGA 823
Query 719 ATGAGGTGATCGATGTGATGACTT 742
||||||||||||||||||||||||
Sbjct 824 ATGAGGTGATCGATGTGATGACTT 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5