BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475745
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66430.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1921 0.0
> AT1G66430.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:24778271-24780629 FORWARD LENGTH=1520
Length=1520
Score = 1921 bits (1040), Expect = 0.0
Identities = 1297/1414 (92%), Gaps = 45/1414 (3%)
Strand=Plus/Plus
Query 42 AAAACCAAAACTAGCGTCTCCAAAACGCGTTTCTCTATCCCTGCGTTTCCCGTTTGCTTT 101
||||| |||| |||| ||||||| ||||| ||| | || ||||||||||||||||| ||
Sbjct 62 AAAACAAAAAGTAGCTTCTCCAAGACGCGGTTCCCAATATCTGCGTTTCCCGTTTGCGTT 121
Query 102 TTCCGGCGATGGCTCTCCAAG-C-C-ACTACGACGTTCTGCTTCTCCGGTCCAACTTTCC 158
||||||| ||||||||||||| | | ||||| ||||||||||||||||||||||||||||
Sbjct 122 TTCCGGCAATGGCTCTCCAAGCCACTACTACTACGTTCTGCTTCTCCGGTCCAACTTTCC 181
Query 159 GATCAACTCCTCACTCACTCACTTCAAAACG-CCGTATCTCCATCAAAGCTActtcttct 217
||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 182 GATCAACTCCTCACTCACTCACTTCAAAACGTCC-TATCTCCATCAAAGCTA------CT 234
Query 218 tcttcttcttcttcttcAAGACTCTCAAACTCAAGATCTAATCTCAAAGGAAGAGCATTG 277
||||||| || ||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 235 ACTTCTTC-TC--CTTCAAGACTCTCCAATTCACGATCTAATCTCAAAGGAAGAGCATTG 291
Query 278 TCTAGTGATGGTTCATCAACACAAGAGTCTCCTTATGTGGTCTGTTTTGGAGAAATGTTA 337
||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct 292 TCTAGTGATGG-T--TCAACACAAGAATCTCCTTATGTAGTCTGTTTTGGAGAAATGCTA 348
Query 338 ATCGATTTTGTACCGACAACTAGCGGACTTTCATTAGCCGATGCACCGGCTTTTAAAAAA 397
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 349 ATCGATTTTGTACCGACGACAAGCGGACTTTCATTAGCCGATGCACCGGCTTTTAAAAAA 408
Query 398 GCTCCAGGTGGTGCACCTGCTAATGTAGCTGTTGGTATTGCTCGTCTTGGTGGTTCTTCA 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GCTCCAGGTGGTGCACCTGCTAATGTAGCTGTTGGTATTGCTCGTCTTGGTGGTTCTTCA 468
Query 458 GCTTTCATTGGGAAGGTTGGTGAAGATGAGTTTGGTTATATGCTTGCGAATATTTTGAAA 517
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GCTTTCATTGGAAAGGTTGGTGAAGATGAGTTTGGTTATATGCTTGCGAATATTTTGAAA 528
Query 518 GATAATAATGTAAACAACGAAGGTATGAGGTTTGATCCTGGAGCTAGAACTGCTTTAGCT 577
||||||||||| ||||| || ||||||||||||||||| ||||| |||||||||||||||
Sbjct 529 GATAATAATGTGAACAATGATGGTATGAGGTTTGATCCAGGAGCAAGAACTGCTTTAGCT 588
Query 578 TTTGTGACTTTGACTAGTGAAGGTGAAAGGGAGTTTATGTTTTATCGAAACCCGAGTGCT 637
|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 589 TTTGTGACTTTGACTAATGAAGGTGAAAGAGAGTTTATGTTTTACCGAAACCCGAGTGCT 648
Query 638 GATATGTTGTTAGAGGAGTCTGAGCTTGATTTTGATTTGATCAAAAAGGCGAAGATATTC 697
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 649 GATATGTTGTTAGAGGAGTCTGAGCTTGATTTTGATTTGATCAAAAAGGCAAAGATATTT 708
Query 698 CATTATGGTTCGATAAGTCTTATCACAGAACCGTGCAAGTCTGCTCATATAGCTGCAGCA 757
||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 709 CATTACGGTTCGATAAGTCTTATCACCGAACCGTGCAAGTCTGCGCATATTTCTGCAGCT 768
Query 758 AAGGCTGCTAAGGAGGCTGGTGTTATTCTTTCCTATGACCCAAACCTTAGGCTCCCATTG 817
||||| |||||||||||||||||||| || || |||||||| ||||||||||| || |||
Sbjct 769 AAGGCGGCTAAGGAGGCTGGTGTTATACTCTCTTATGACCCTAACCTTAGGCTTCCGTTG 828
Query 818 TGGCCTTCTCCAGACAACGCTAGGGAAGAGATTCTAAGCATTTGGGAGACTGCTGATATC 877
||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 829 TGGCCTTCTGCAGACAATGCTAGGGAAGAGATTCTGAGCATTTGGGAGACTGCTGATATT 888
Query 878 ATAAAGATAAGCGAAGAGGAGATCGTCTTTTTAACGAAAGGAGAAGATCCGTATGATGAT 937
||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 889 ATAAAGATAAGTGAAGAGGAGATTGTCTTTCTAACGAAAGGAGAAGATCCGTATGATGAT 948
Query 938 AATGTTGTCCGCAAGTTGTTTCATCCTAAGCTGAAACTTCTTCTTGTCACTGAAGGTCCT 997
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 949 AATGTTGTACGCAAGTTGTTTCATCCTAAGCTGAAACTTCTCCTTGTCACTGAAGGTCCT 1008
Query 998 GAAGGCTGTCGGTACTACACCAAGGATTTTAGCGGGAGAGTGCATGGATTGAAGGTGGAT 1057
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1009 GAAGGCTGTCGGTACTACACCAAGGATTTTAGTGGGAGAGTGCATGGATTGAAGGTGGAT 1068
Query 1058 GTAGTGGACACAACAGGTGCTGGTGATGCATTTGTTGCGGGAATACTTTCGCAACTAGCC 1117
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1069 GTAGTGGACACAACAGGTGCTGGTGATGCATTTGTTGCGGGGATACTATCGCAACTAGCC 1128
Query 1118 AATGATCTTTCCTTGCTTCAGGACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAAT 1177
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AATGATCTCTCCTTGCTTCAGGACGAAGAGCGACTGAGAGAGGCTCTTATGTTTGCGAAT 1188
Query 1178 GCTTGCGGGGCCTTAACTGTTAAAGTGAGAGGCGCAATTCCGGCCCTTCCCACCAAAGAA 1237
|| |||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1189 GCATGCGGGGCATTAACCGTTAAAGTGAGAGGCGCAATCCCGGCCCTTCCAACCAAAGAA 1248
Query 1238 GCTGTACATGAGGCTCTACTCAAAGCGGTCGTTTAACATTCAATAACATCAC---T---- 1290
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1249 GCTGTACATGAGGCTCTACTCAAAGCCGTCGTTTAACATTCAATAACATCACCAATATGA 1308
Query 1291 ----C--T--GTAAGCCAGCAGATTTTGCAAGTCTGCATTTTGTTGTTGTA---T----- 1334
| | ||| |||||||||||| |||||||||||||||||||||||| |
Sbjct 1309 GAAACAGTTTGTACGCCAGCAGATTTCGCAAGTCTGCATTTTGTTGTTGTAAAATTGTTG 1368
Query 1335 -A-A-TGTACTCGCCATTGTTTGTATTCTAGTAGCTGTAGAGATT-A-GCCTTTGAAAAT 1389
| | |||||| ||| ||||||||||||||||||||||||| || | ||||||||| ||
Sbjct 1369 TATAATGTACTTACCAATGTTTGTATTCTAGTAGCTGTAGAGCTTTAAGCCTTTGAATAT 1428
Query 1390 ATTGTTGAGCCAAGAACTTGAATCCATCTTTTGA 1423
|||||||||||||||||| |||||||||||||||
Sbjct 1429 ATTGTTGAGCCAAGAACTAGAATCCATCTTTTGA 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70130161365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5