BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475746
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66460.1 | Symbols: | Protein kinase superfamily protein | ... 2255 0.0
AT5G37790.1 | Symbols: | Protein kinase superfamily protein | ... 1020 0.0
> AT1G66460.1 | Symbols: | Protein kinase superfamily protein
| chr1:24789735-24791988 REVERSE LENGTH=1563
Length=1563
Score = 2255 bits (1221), Expect = 0.0
Identities = 1446/1553 (93%), Gaps = 21/1553 (1%)
Strand=Plus/Plus
Query 1 ATGATTCTTGATTTGGGTTTTGGTTGTTTCCTTCTTCCTCGAACCAGCTCCT-GTGAGGA 59
||||||||||||||||||||| |||||| ||| |||||||||||||| || |||||||
Sbjct 1 ATGATTCTTGATTTGGGTTTTCCTTGTTTTGTTCCTCCTCGAACCAGCT-CTCGTGAGGA 59
Query 60 CAACAAAGCTTGGCTTCTGGAGGAGACAGAGCCGAAGTTTATAGACTCAGAACCACATTC 119
|||||||||||||||||||| || |||||||||||| |||| |||||||||| ||||||
Sbjct 60 CAACAAAGCTTGGCTTCTGGCTGAAACAGAGCCGAAGCTTATTGACTCAGAACAACATTC 119
Query 120 GTTGCAGTCTTCATTTAGGTTTAGTCTTTGTTCGCAAG-TGGAGCTGGAGAAGATGAAAA 178
|||||||||||| ||||||||||||||||| || | || |||||||||||||||| ||||
Sbjct 120 GTTGCAGTCTTCGTTTAGGTTTAGTCTTTGCTCAC-AGTTGGAGCTGGAGAAGATTAAAA 178
Query 179 AGGAGCAACCTTCGTCGTCTTATCGGAATTTTCCGGTGTCTGAAGGATCAGAGACGGTTC 238
||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 179 AGGAGAAACCTTCGTTGTCTTATCGGAATTTTCCAGTGTCTGAAGGATCAGAGACGGTTC 238
Query 239 TGCTAGTGAATCTGGAGAATGAGACAGGAGAATTGACGA-ATGAGATGAATTTTTCGAGA 297
||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 239 TGCTAGTGAATCTGGAGAATGAGACAGGAGAATTGAC-AGGTGAGATGAATTGGTCGAGA 297
Query 298 GGTCTTTCACTGGAGAAGAGTATTTCTCCTGTGGCTAATACTTTGGTCCGATTCAGTTAC 357
|| |||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct 298 GGCCTTTCACTGGAGAAGAGTATTTCTCCGGTGGCCGATTCTTTGATCCGATTCAGTTAC 357
Query 358 AGCGAACTCCTCGCTGCTACGCACAATTTCTCAAAACGTAGAGTGTTGGGAAGAGGAGCT 417
||||||||||| |||| |||| ||||||||||||||| || || |||||||||||||||
Sbjct 358 CGCGAACTCCTCACTGCCACGCGCAATTTCTCAAAACGGAGGGTTTTGGGAAGAGGAGCT 417
Query 418 TGTAGCTATGTGTTTAAGGGAAGAAT-GGGCATTTGGCGTAAAGCAGTAGCCATCAAAAG 476
||||||||||| |||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct 418 TGTAGCTATGTTTTTAAGGGAAGAATCGGG-ATTTGGCGTAAAGCCGTGGCCATCAAAAG 476
Query 477 ACTTGATAAAAAGGATAAAGAATCTCCAAAGTCGTTTTGCAGAGAGTTGATGATTGCAAG 536
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ACTTGATAAAAAAGATAAAGAATCTCCAAAGTCGTTTTGCAGAGAGTTGATGATTGCAAG 536
Query 537 CTCTCTTAAAT-GCCCTAACGTTGTACCTCTACTAGGGTTCTGTATTGATCCCGATCAAG 595
||||||| ||| |||| |||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 537 CTCTCTT-AATAGCCCCAACGTTGTGCCTCTGCTAGGTTTCTGTATCGATCCCGATCAAG 595
Query 596 GGCTTTTCTTGGTGTACAAGTATGTCTCTGGTGGCAGCCTTGAACGCTTTTTACATGATA 655
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 596 GGCTTTTCTTGGTGTACAAGTATGTGTCTGGTGGCAGCCTCGAACGCTTTTTACATGAT- 654
Query 656 ACAAGAAGAAGAAGAAGGGAAGGAAAACCCCCTTGAATCTGCCTTGGTCTACAAGGTACA 715
|||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 655 --AAGAAGAAAAAGAAGAGTAGGAAGACCCCCTTGAATCTGCCTTGGTCTACAAGGTACA 712
Query 716 AGGTTGCCTTAGGTATTGCAGATGCCATAGCCTATTTACATAATGGCACAGAGCAATGTG 775
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 713 AGGTTGCCTTAGGTATTGCAGATGCCATAGCCTATTTACATAATGGCACTGAGCAATGCG 772
Query 776 TTGTGCATAGAGACATCAAACCCTCAAATATTCTTCTTTCCTCAAACAAAATTCCGAAGT 835
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 773 TTGTGCATAGAGACATTAAACCCTCAAATATTCTTCTTTCCTCAAACAAAATTCCAAAGT 832
Query 836 TGTGTGATTTTGGGTTGGCGACTTGGACCGCTGCACCTTCGGTTCCTTTCCTCTGTAAAA 895
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 833 TGTGTGATTTTGGGTTGGCTACTTGGACCGCTGCGCCTTCGGTTCCTTTCCTCTGTAAAA 892
Query 896 CCGTGAAAGGAACTTTCGGTTATCTAGCTCCTGAGTATTTCCAACACGGCAAGATATCTG 955
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 893 CCGTGAAAGGAACTTTTGGTTATCTGGCTCCTGAGTATTTCCAACACGGCAAGATATCTG 952
Query 956 ACAAGACCGATGTTTACGCATTTGGAGTCGTGTTGCTTGAGCTAATAACTGGTCGGAAGC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 ACAAGACCGATGTTTACGCATTTGGAGTCGTGTTGCTTGAGCTAATAACTGGTCGGAAGC 1012
Query 1016 CAATTGAAGCAAGAAGACCATCTGGTGAAGAAAATTTGGTAGTTTGGGCAAAACCGTTGT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CAATTGAAGCAAGAAGACCATCTGGTGAAGAAAATTTGGTAGTTTGGGCAAAACCGTTGT 1072
Query 1076 TACATAGAGGGATTGAAGCTATAGAGGAGTTGCTTGATTCCA-GGCTGAAATATACAAGA 1134
| ||||||||||| ||||||| |||||||||||| ||| ||| ||||||||| ||| |||
Sbjct 1073 TGCATAGAGGGATAGAAGCTACAGAGGAGTTGCTAGAT-CCAAGGCTGAAATGTACTAGA 1131
Query 1135 AAGAATTCGGTTTCGATGGAGCGTATGATCCGAGCTGCAGCGGCCTGTGTGATCAGTGAG 1194
|| || |||| ||||||||||||||||||||||||||| || || |||||||||| ||||
Sbjct 1132 AAAAACTCGGCTTCGATGGAGCGTATGATCCGAGCTGCGGCAGCGTGTGTGATCAATGAG 1191
Query 1195 GAGTCGCGAAGACCGGGGATGAAGGAGATACTTTCAATCCTAAAAGGCGGTGAAGGGATA 1254
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GAATCACGAAGACCGGGGATGAAGGAGATACTTTCAATCCTAAAAGGCGGTGAAGGGATA 1251
Query 1255 GAACTAAGGGCGTTTTCAAGCCGGAAGAAATCAAATCTTCCGGGTATGATGGATTGTTAT 1314
||||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1252 GAACTAAGGACGTTATCAAGCCGGAAGAAATCAAATCTTCCGGGTATAATGGACTGTTAT 1311
Query 1315 CCCCAGTTGCAGCGGACAAAATCTGAGATGAAGAGTCATCTTACGCTTGCGATGCTCGGA 1374
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CCGCAGTTGCAACGGACAAAATCTGAGATGAAGAGTCATCTTACGCTTGCGATGCTCGGA 1371
Query 1375 GTAACGGAATTTGAAGATGATGATCTTTTGTAGGGAATGTAACA-ATCCGGAGATATGGT 1433
|||||||||||||||| |||||||||||||||||||| |||||| | ||||||| |||||
Sbjct 1372 GTAACGGAATTTGAAGCTGATGATCTTTTGTAGGGAAGGTAACAGA-CCGGAGACATGGT 1430
Query 1434 AAGAAACAAACAATAAGAAGGTGGTAAGTGTAGTGTAGATATCAT-TGTAAATGTTTATT 1492
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
Sbjct 1431 AAGAAACAAACAATAAGAAGGTGGTAAGTA-AGTGTAGATATCAAATGTAAATGTTTACT 1489
Query 1493 GA--TACCCGGTTAAGATTTTATTTTCCGGTTTGGGTAATAATCATAAATAAA 1543
|| |||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1490 GAGATACCCGGTTAAGATTTTAATTTCCGGTTTGGTTAATAATCATAAATAAA 1542
> AT5G37790.1 | Symbols: | Protein kinase superfamily protein
| chr5:15008172-15011152 REVERSE LENGTH=2047
Length=2047
Score = 1020 bits (552), Expect = 0.0
Identities = 1130/1398 (81%), Gaps = 83/1398 (6%)
Strand=Plus/Plus
Query 61 AACAAAGCTTGGCT-TCTGGAGGAGACAG-AGCCGAAGTTTATAGACT-CAGAACCACAT 117
|||||||||||||| | ||| ||| |||| | ||| || ||| || | | || || |||
Sbjct 410 AACAAAGCTTGGCTAT-TGGCGGAAACAGCA-CCGGAGAATAT-GAATCCTGATCCTCAT 466
Query 118 TC-GTTGCAGTCTTCATTTAGGTTTAGTCTTTGTTCGCAAGTGGAGCTGGAGAAGATGAA 176
|| ||| || || || ||||| || ||||||||||| ||| | ||||| ||||| |||||
Sbjct 467 TCAGTT-CATTCATCGTTTAGATTCAGTCTTTGTTCACAAATCGAGCTTGAGAAAATGAA 525
Query 177 A----AAGGA--G--C--AAC--CTTCGTCGTCTTATCGGAATTT-TCCGGTGTCTGAAG 223
| ||| | | | | ||||||| |||| ||||||||| | |||| |||| |
Sbjct 526 AGGTGAAGAACCGTCCTTGTCTGCTTCGTCTTCTTGTCGGAATTTGT-CGGTTTCTGGTG 584
Query 224 GAT-CAGAGACGGTTCTGCTAGTGAATCTGGAGAAT-GAG--ACAGGAGA--ATTGACGA 277
| | || ||||||| || | || ||| |||||||| | | | |||||| | || ||
Sbjct 585 GTTCCA-CGACGGTTTTGATGGTTAATTTGGAGAATGGTGTTA-AGGAGACTACTG-GGA 641
Query 278 ATGAGA-TGA--ATTT----T--TCGAGAGGTCTTTCACTGGAGAAGAGTATTTCTCCTG 328
||| || ||| |||| | | |||| | || || ||||||||||||||||| |
Sbjct 642 ATGCGACTGATGATTTGCGGTGGACTAGAGCTAGGTCGCTTGAGAAGAGTATTTCTCCGG 701
Query 329 TGGCTAATACTTTGGTCCGATTCAGTTACAGCGA-ACTCCTCGCTGCTACGCACAATTTC 387
|||||||||||||||| || || || ||| | || | | | || ||||| | ||||||
Sbjct 702 TGGCTAATACTTTGGTTCGGTTTAGCTACGGTGAGA-TTGTGGCAGCTACTCGTAATTTC 760
Query 388 TCAAAACGTAGAGTGTTGGGAAGAGGAGCTTGTAGCTATGTGTTTA-AGGGAAGAATGGG 446
|| ||| | ||||||||||||||||||||||||||||||||||||| ||| || ||| ||
Sbjct 761 TCTAAAGGGAGAGTGTTGGGAAGAGGAGCTTGTAGCTATGTGTTTAGAGGCAA-AATCGG 819
Query 447 CATTTGGCGTAAAG-CAGTAGCCATCAAAAGACTTGATAAA-AAGGATAAAGAATCTCC- 503
|| ||| | || | | |||| ||||| ||||||||||| ||| | |||||||||||
Sbjct 820 AATGTGGAG-AACGGCTTTAGCAATCAAGAGACTTGATAAGGAAG-ACAAAGAATCTCCT 877
Query 504 AAAGTCGTTTTGCAGAGAGTTGATGATTGCAAGCTCTCTTAA-ATGC-CCTAACGTTGTA 561
||| || ||||| ||||||||||||||||||||||||||| | | || || ||| |||||
Sbjct 878 AAA-TCTTTTTGTAGAGAGTTGATGATTGCAAGCTCTCTTCATA-GCTCC-AACATTGTA 934
Query 562 CCTCTACTAGGGTTCTGTATTGATCCCGATCAAGGGCTT-TTCTTGGTGTACAAGTATGT 620
||||| || || |||||||||||||| || ||||| || |||||||| |||||||||||
Sbjct 935 CCTCTTCTTGGATTCTGTATTGATCCTGAAGAAGGG-TTATTCTTGGTTTACAAGTATGT 993
Query 621 CTCTGGTGGCAGCCTTGAACGCTT-TTTACATGATAACAAGAAGAAGAAGAAGGGAAGGA 679
||||||||| ||||| |||| || |||||| ||||| ||||||||||| | || | |
Sbjct 994 CTCTGGTGGTAGCCTCGAACA-TTATTTACACGATAAGAAGAAGAAGAA-A-GGC--GTA 1048
Query 680 AAACCCCCTT--GAATCTGCCTTGGTCTA-CAAGGTACAAGGTTGCCTTAGGTATTGCAG 736
||| || ||| | | |||||||||| | ||||||||||||| || |||||||| ||||
Sbjct 1049 AAAGCCGCTTTTGGTT-TGCCTTGGTC-AGCAAGGTACAAGGTAGCGTTAGGTATAGCAG 1106
Query 737 ATGCCATAGCCTATTTACATAATGGCACAGAGCAATGTGTTGTGCATAGAGACATCAAAC 796
|||||||||| ||||| |||||||| ||||||||||||||||| || ||||| |||||||
Sbjct 1107 ATGCCATAGCTTATTTGCATAATGGAACAGAGCAATGTGTTGTTCACAGAGATATCAAAC 1166
Query 797 CCTCAAATATTCTTCTTTCCTCAAACAAAATTCCGAAGTTGTGTGATTTTGGGTTGGCGA 856
|||| |||||||||||||||||||| ||||| || |||||||||||||||||||| || |
Sbjct 1167 CCTCCAATATTCTTCTTTCCTCAAAGAAAATACCAAAGTTGTGTGATTTTGGGTTAGCTA 1226
Query 857 CTTGGACCGCTGCACCTTCGGTTCCTTTCCTCTGTAAAACCGTGAAAGGAACTTTCGGTT 916
|||||||||||||||||||||||||||||||||| || ||||||||||| || ||||| |
Sbjct 1227 CTTGGACCGCTGCACCTTCGGTTCCTTTCCTCTGCAAGACCGTGAAAGGCACATTCGGCT 1286
Query 917 ATCTAGCTCCTGAGTATTTCCAACACGGCAAGATATCTGACAAGACCGATGTTTACGCAT 976
|||| ||||||||||||||||| || || ||||||||||||||||||||||||||||| |
Sbjct 1287 ATCTGGCTCCTGAGTATTTCCAGCATGGTAAGATATCTGACAAGACCGATGTTTACGCCT 1346
Query 977 TTGGAGTCGTGTTGCTTGAGCTAATAACTGGTCGGAAGCCAATTGAAGCAAGAAGACCAT 1036
| || || ||||||||||||||||||||||| ||||| ||||| |||||||||||| |||
Sbjct 1347 TCGGGGTTGTGTTGCTTGAGCTAATAACTGGCCGGAAACCAATCGAAGCAAGAAGAGCAT 1406
Query 1037 CTGGTGAAGAAAATTTGGTAGTTTGGGCAAAACCGTTGTTACATAGAGGGATTGAAGCTA 1096
||||| |||||||| |||| |||||||| ||||||||||| |||||||||| |||||||
Sbjct 1407 CTGGTCAAGAAAATCTGGTTGTTTGGGCGAAACCGTTGTTGGATAGAGGGATAGAAGCTA 1466
Query 1097 TAGAGGAGTTGCTTGATTCCA-GGCTGAAATATACAAGAAAGAATTCGGTTTCGA-TGGA 1154
||| |||| |||||||| ||| |||| |||| |||||||| || |||||| | | ||||
Sbjct 1467 TAGTGGAGCTGCTTGAT-CCAAGGCTAAAATGCACAAGAAAAAACTCGGTT-CAAATGGA 1524
Query 1155 GCGTATGATCCGAGCTGCAGCGGCCTGTGTGATCAGTGAGGAGTCGCGAAGACCGGGGAT 1214
||| |||||||| ||||||||||| |||||||||| ||||||||| |||||||| || ||
Sbjct 1525 GCGGATGATCCGTGCTGCAGCGGCGTGTGTGATCAATGAGGAGTCCCGAAGACCCGGTAT 1584
Query 1215 G-AAGGAGATACTTTCAATCCTAAAAGGCGGTGAAGG-GATAGAACTA-AGGGCGTTTTC 1271
| ||| |||| | |||||| | ||||||| ||||| | |||| | | | | |||
Sbjct 1585 GGAAG-AGATTGTCTCAATCTTGAAAGGCGAAGAAGGTG-TAGAGCCAGAAA-CACATTC 1641
Query 1272 AAGCCGGAAGAAAT-CAAATCTTCCGGGTATGATGGATTGTTATCCCCAGTTGCAGCGGA 1330
|||| |||| || | ||||| || |||||||||| || | |||| | || ||||| | |
Sbjct 1642 AAGCAGGAA-AACTACAAATATTTCGGGTATGATTGACTCTTATACACAATTGCAACAAA 1700
Query 1331 CAAAATCTGAGATGAAGA-GTCATCTT-ACGCTTGCGATGCTCGGAGTAACGGAATTTGA 1388
| ||||| |||||||| | |||||||| | |||||||||||||||||||| || |||||
Sbjct 1701 CCAAATCCGAGATGAA-ATGTCATCTTGAT-CTTGCGATGCTCGGAGTAACCGAGTTTGA 1758
Query 1389 AGATGATGATCTTTTGTA 1406
||||||||||| | ||||
Sbjct 1759 AGATGATGATCATGTGTA 1776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5