BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475748
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66480.1 | Symbols: | plastid movement impaired 2 | chr1:24... 1369 0.0
> AT1G66480.1 | Symbols: | plastid movement impaired 2 | chr1:24805635-24807557
REVERSE LENGTH=965
Length=965
Score = 1369 bits (741), Expect = 0.0
Identities = 900/975 (92%), Gaps = 18/975 (2%)
Strand=Plus/Plus
Query 1 CAGCTTCACACACTCTAAAATTCaaaaaaaTAATA-TTTCAACCAAACCTCCTCAACATA 59
||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1 CAGCTTCACACACACTAAAATTCAAAAAAATAACATTTTCAACCAAACCTCCTCAACATA 60
Query 60 TATAAATAGTAACATAGCCACTTTATAACACATTTTCACATTATCCAATCaaaaaaacaa 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 61 TATAAATAGTAACATAGCCACTTTATAACACATTTTCACATTATCAAATCAAATAAACAA 120
Query 120 aaaaaaaaaaaa--CAAAGCAAAGCAAAGAGACAATGGGAAACAGCATTACTGTGAAGAG 177
|||||||||||| |||||| ||| ||| | | |||||||||||||||||||||||||||
Sbjct 121 AAAAAAAAAAAAAGCAAAGCGAAGAAAAAA-A-AATGGGAAACAGCATTACTGTGAAGAG 178
Query 178 AAAGAGAGCTAAAGTAATGAAGATCGACGGCGAAACTTTCCGAATTAAAACTCCGGTGAC 237
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAAAAGAGCTAAAGTAATGAAGATCGACGGCGAAACTTTCCGAATTAAAACTCCGGTGAC 238
Query 238 GGCGAGGGAAGTCACGGCGGATTATCCCGGTTACGTTTTGCTAGATTCTCAAGCCGTTAA 297
|||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 GGCGAGAGAAGTCACCGCGGATTATCCCGGTTACGTTTTGTTAGATTCTCAAGCCGTTAA 298
Query 298 ACACTTTGGAGTTCGCTCTAAACCGCTTGAACCGAGCCAAATCTTGAAGCCGAAGAAA-A 356
||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| ||| |
Sbjct 299 ACACTTTGGAGTTCGCTCTAAGCCGCTTGAACCGAACCAAACCTTGAAGCCGAA-AAAGA 357
Query 357 CTTATTTTCTCGTCGAGCTTCCTAAGCTTCCGCCGGAGACGACGGCG-TCAGATACGGAC 415
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||
Sbjct 358 CTTATTTTCTCGTCGAGCTTCCTAAGCTTCCACCGGAGACGACGGCGGTG-GATACAGAA 416
Query 416 AATAAGCTTCCGTACCGGAGAGTTATGTCTGGAATCCACGTTGGCGCGAAGGAGCGGTTA 475
|||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 417 AATAAGCTACCGTACCGGAGAGTGATGTCTGGTATCCACGTTGGCGCAAAGGAGCGGTTA 476
Query 476 GAAATGTTGATGCTGTCTCGGAGAACGGTTTCTGACGTTACGATCGGGAGATCTGACGGC 535
|| ||||||||| ||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 477 GATATGTTGATGTTGTCTCGGAGAACGGTTTCTGACGTCACAATCGGAAGATCTGACGGT 536
Query 536 GGAGATGGGTTTGGGCCTGGGCTTGGGCCTGGACATACGAGTGTGAGGTTGAGGTTGCCT 595
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GGAGATGGGTTTGGGCCTGAGCTTGGGCCTGGACATACGAGTGTGAGGTTGAGGTTGCCT 596
Query 596 CGTTCTCAGATTACGAAGCTTATGGAAGAGAATAATAATGATGCTTCAGCGATAGCTGAG 655
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 597 CGTTCTCAGATCACGAAGCTTATGGAAGAGAATAATAATGATGCTTCGGCCATAGCTGAG 656
Query 656 AAGATTTTAGGTATCTACATGGAGAGGTCCGGTGAGCTTGGCGGCGGTAGAGGTGGCGGT 715
||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| | |
Sbjct 657 AAGATTTTAGGTATCTATATGGAGAGGTCTGGCGAGCTTGGCGGCGGTAGAGGTGGTGTT 716
Query 716 GACGGCCGCCGGAAACTTGGAAGTGGGGAGATTAAAGCGCGTGAGAAGCAGGTGAGTTTC 775
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GACGGCCGCCGGGAACTTGGAAGTGGGGAGATTAAAGCGCGTGAGAAGCAGGTGAGTTTC 776
Query 776 GCCGGAGATGGTGGACGGGAGCTTCCTGTTCTATGGAGCAGAAGTGGAAAATAATCATCA 835
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 777 GCCGGAGAAGGTGGACGGGAGCTTCCTGTTCTATGGAGTAGAAGTGGAAAATAATCATCA 836
Query 836 ATTAGACAAACTA-ATT--CTCCTTTTCCATTTTTTAGAACCCTTTTTCTATTTATGTTC 892
| || |||| || | || || || |||||| |||||| |||| | ||| | |||
Sbjct 837 AATATTCAAA-TAGACAAACTAATTCTC--TTTTTT-GAACCCCTTTTATTTTT-T-TTC 890
Query 893 TTATATAAAGTTATTGTGGTAGGACTCCTATATTATGTGTATAAATATCTTTTATATAGC 952
|||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 891 TTATATGAAGTTATTGTGGTAGGACTCATATATTATGTGTATAAATCTCTTTTATCTAGC 950
Query 953 AAGTAGAGATGATTT 967
|| ||||||| ||||
Sbjct 951 AACTAGAGATTATTT 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47320566474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5