BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475757
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56090.1 | Symbols: COX15 | cytochrome c oxidase 15 | chr5:2... 2399 0.0
> AT5G56090.1 | Symbols: COX15 | cytochrome c oxidase 15 | chr5:22714518-22716835
FORWARD LENGTH=1720
Length=1720
Score = 2399 bits (1299), Expect = 0.0
Identities = 1497/1591 (94%), Gaps = 19/1591 (1%)
Strand=Plus/Plus
Query 13 GCAGAAACCTTGCTTAAACCCTAGAGAGATAGACATGTTTCGAGCAGTGGGATCGGCTTT 72
||| ||||||||||||||||||||||||||||| |||||||| || || ||||||||| |
Sbjct 83 GCAAAAACCTTGCTTAAACCCTAGAGAGATAGAGATGTTTCGGGCGGTTGGATCGGCTCT 142
Query 73 GAAGAGGAACAAAGAAGCGTTTAATGGAATCGCTCGAGGATTCACCACTTCGTCTCATCA 132
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 143 GAAGAGGAACAAAGAAGCGTTTAATGGAATTGCTCGAGGATTCACCACTTCGTCTCATCG 202
Query 133 AGCTTTCACTTCTAACATTACAGCTGCTACTGTAACCTCTGCTTCGTCTTCTTCTCTAGC 192
|| ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 203 AGTTTTCACTTCTAACATTACAGCTGCTTCTGTAACCTCTGCTTCGTCTTCTCCTTTAGC 262
Query 193 TGGAAACTCCTTCTATGGCTTGCCATCTCTTCTCAAGGGTCAAAATGCTTCAATGTTTAG 252
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 263 TGGAAACTCCTTCTATGGCTTGCGATCTCTGCTCAAGGGTCAAAATGCTTCAATGTTTAG 322
Query 253 AAAGATGTCAACTGTAGCGTCGATTAGCTCAGAGAGTAAAGAGGGTTTGAAGCATCTTGT 312
| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 323 GAGGATGTCAACTGTAGCGTCGATAAGCTCAGAGAGTAAAGAGGGTTTGAAGCTTCTTGT 382
Query 313 CACTGGAGGACCTCAAGCTC-GTAAATGGGTTGGCATATGGCTTTTTGGTTCTGCTACTT 371
|||||||||||||||||||| | ||||||||||| || |||||||||||||| ||| |||
Sbjct 383 CACTGGAGGACCTCAAGCTCAG-AAATGGGTTGGAATTTGGCTTTTTGGTTCGGCTGCTT 441
Query 372 GGGTTTTCAGCATGGTTGTTCTAGGCGGAGTTACTCGATTAACTCGATCTGGTTTATCCA 431
||||||||||||||||||| || ||||| || || ||||||||||||||||||||||| |
Sbjct 442 GGGTTTTCAGCATGGTTGTACTTGGCGGTGTAACCCGATTAACTCGATCTGGTTTATCGA 501
Query 432 TGACTGATTGGAAATTTACTGGTGAATTCCCTCCGCTGTCAGATGAAGCATGGG-TTTGC 490
|||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |
Sbjct 502 TGACTGATTGGAAATTTACTGGTGAATTCCCTCCTCTGTCAGATGAAGCTTGGGCTAAG- 560
Query 491 GAGTTTGAGAAATATATGCAGTCTCCTGAATATAAGCGTGTGAACAAAGGGATGAATCTT 550
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||
Sbjct 561 GAGTTTGAGAAATATAAGCAGTCACCTGAATATAAGCGTGTGAACAAAGGGATGAACCTT 620
Query 551 GAAGATTTTAAGTTTATATATTGGATGGAGTATGCTCATCGAATGTGGGGAAGAGGATTG 610
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GAAGATTTTAAGTTCATATATTGGATGGAGTATGCTCATCGAATGTGGGGAAGAGGATTG 680
Query 611 GGAATCATGTTTGCTTTGCCGTTTTCCTATTTTCTGCGGAAAGGGTATATTACTCTACGT 670
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 681 GGAATCATGTTTGCTTTGCCGTTTTCTTATTTTCTGCGTAAAGGGTATATTACTCTACGT 740
Query 671 CTTGGAGTTCAGCTCTCTGGTTTATTTGCGCTTGGTGCTGGACAAGGTCTCATTGGTTGG 730
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 741 CTTGGAGTTCAGCTCTCTGGTTTATTTGCGCTTGGTGCTGGACAAGGTTTCATTGGTTGG 800
Query 731 TGGATGGTTAAAAGTGGTTTAGAGGAGCCGCCATCTGAATATTCTCAACCGAGGGTAAGC 790
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 801 TGGATGGTTAAAAGTGGTTTAGAGGAGCCACCGTCTGAGTATTCTCAACCGAGGGTAAGC 860
Query 791 CCGTACCGTCTTGCAGCTCATCTGACCTCAGCTTTTGCCATTTATTGTGGACTTTTCTGG 850
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 861 CCATACCGTCTTGCAGCTCACCTGACCTCAGCTTTTGCCATTTATTGTGGACTTTTCTGG 920
Query 851 ACCGCTCTCTCTGTTGTTATGCCTGAACCACCAGCTGAGTCATTGGCTTGGGTTAGGGGA 910
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 921 ACCGCTCTCTCTGTTGTTATGCCTGAACCACCAGCTGAGTCACTGGCTTGGGTTCGCGGA 980
Query 911 GCCGCTAAAGTGAAGAAGCTTGCATTACCAGTAAGCTTGATTGTTGGTATCACTGCAATT 970
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 GCAGCTAAAGTGAAGAAGCTTGCATTACCAGTAAGCTTGATTGTTGGTATCACTGCAATT 1040
Query 971 TCAGGAGCCTTTGTTGCTGGAAATGATGCTGGTCGTGCATTCAACACATT-CCCGAAAAT 1029
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1041 TCAGGAGCATTTGTTGCTGGAAATGATGCTGGTCGTGCATTCAACACATTTCCC-AAAAT 1099
Query 1030 GGGCGATACATGGATCCCAGATAATATATTTGAGATGAAACCACTTTTACGCAACTTGTT 1089
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1100 GGGTGACACATGGATCCCAGATAATATATTTGAGATGAAACCACTTTTACGCAACTTTTT 1159
Query 1090 CGAGAACACAGCAACTGTTCAGCTTGATCATCGCCTTCTTGCAACCACAACCCTAATCGC 1149
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1160 CGAGAACACAGCAACTGTTCAGCTTGATCATCGCCTTCTGGCAACCACAACATTAATCGC 1219
Query 1150 AATTGGAACAATGTGGTGGTTCACAAGGAAGCTAGACATACATCCAGCCGTTAAAGCTTT 1209
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1220 AATCGGAACAATGTGGTGGTTCACAAGGAAGCTAGACATACATCCAGCTGTTAAAGCTTT 1279
Query 1210 GATCGGAAGTACCGTCGGAATGACTGCTGTTCAGGTGACATTAGGTGTATCAACGCTTCT 1269
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 GATCGGAAGTACTGTTGGAATGACTGCTGTTCAGGTGACATTAGGTGTATCAACGCTTCT 1339
Query 1270 GAGTTATGTTCCGGTCTCACTAGGAAGCGCACACCAAGCAGGAGCTTTAACACTTCTCAA 1329
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1340 GAGTTATGTTCCGGTTTCACTAGGAAGTGCACACCAAGCAGGAGCTTTAACACTTCTCAC 1399
Query 1330 TTTGATGCTACTTCTCAATCACACTCTTCGGAGGCCATCACCTTCTCTTCTCAAGTCTCT 1389
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1400 TTTGATGCTACTTCTCAATCACACTCTTCGGAGGCCATCACCTTCTCTTCTCAAATCTCT 1459
Query 1390 TCCACAAGTTGCTAAATCAAATTTTAGCTAAAGCCCTCTTCACTAAAATCTT-CCGTTTT 1448
|||||||||||||||||||||||| |||||| ||||||||||| |||||||| || ||||
Sbjct 1460 TCCACAAGTTGCTAAATCAAATTTCAGCTAA-GCCCTCTTCACCAAAATCTTTCC-TTTT 1517
Query 1449 TCATTATTTACTAAAGAAACTATTCTTTGGCTCACTATTATACTAGCAAGCTTTCATCGA 1508
||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1518 TCATTATTTACTAAAAAAACAATTCTTTGGCTCACTATGCTACTAGCAAGCTTTCATCGA 1577
Query 1509 GTCCTGCGTCAATGATGTTGTATTATCAGTCATGACTCGAAAAATAAAGTACGAAAACAA 1568
|| || |||||||||||||||| || | | |||||||||||||| |||||||
Sbjct 1578 ATCTTGTGTCAATGATGTTGTATG----GT--T--C--GAAAAATAAAGTACAAAAACAA 1627
Query 1569 TTAACAAAAGTTTCATATGAATCCTAGAACT 1599
|||||||||||||||||||||||| ||||||
Sbjct 1628 TTAACAAAAGTTTCATATGAATCCCAGAACT 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79015657830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5