BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475761
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66540.1 | Symbols: | Cytochrome P450 superfamily protein |... 2124 0.0
AT4G37360.1 | Symbols: CYP81D2 | cytochrome P450, family 81, su... 1160 0.0
AT1G18810.1 | Symbols: | phytochrome kinase substrate-related ... 52.8 1e-05
> AT1G66540.1 | Symbols: | Cytochrome P450 superfamily protein
| chr1:24824459-24826586 FORWARD LENGTH=1623
Length=1623
Score = 2124 bits (1150), Expect = 0.0
Identities = 1454/1598 (91%), Gaps = 32/1598 (2%)
Strand=Plus/Plus
Query 1 AAGAAAATCAAATCAGCAACAATGGAAGAAGAATCTCAAACCCTAA-T-TC-TCACAATC 57
||||||||||||||| ||||||||||||| ||| |||||||||||| | || ||||||||
Sbjct 1 AAGAAAATCAAATCAACAACAATGGAAGACGAAACTCAAACCCTAATTCTCATCACAATC 60
Query 58 CTAATCCT-A-----AT--C-CT--CA-TCCTCATCAAAAAACTCAAACCAAAACCAAAT 105
|||||||| | || | || || |||||||||||||||||||||||||||||||
Sbjct 61 CTAATCCTAACCCTCATCACTCTCACATTCCTCATCAAAAAACTCAAACCAAAACCAAAC 120
Query 106 CTTCCTCCATCTCCACCGTTCTCACTTCCAATCATCGGCCACCTCCGCCTTCTCAAACCA 165
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCCCACCATCTCCACCGTTCTCACTTCCAATCATCGGCCACCTCCGCCTTCTCAAACCA 180
Query 166 CCGCTCCACCGTATCTTCCTCACCATCTCTAAATCCCTAAACAATTCTCCGATCTTCTCC 225
|||||||||||| | |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 181 CCGCTCCACCGTCTTTTCCTCACCATCTCTAAATCACTAAACGATTCTCCGATCTTCTCC 240
Query 226 CTCCGTCTCGGAAACAAACTCGTTTTCGTCGTCTCTTCAAACTCAATCGTCGAAGAATGC 285
|| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 241 CTTCGTCTAGGAAACAAACTCGTTTTCGTAGTCTCTTCACACTCAATCGTCGAAGAATGC 300
Query 286 TTCACCAAAAACGACGTCGTTCTCGCGAATCGACCAAAGTCAATTGCTTCTAAACACATC 345
||||| ||||||||||||||||||||||| || |||||||||||||||||| |||| |||
Sbjct 301 TTCACGAAAAACGACGTCGTTCTCGCGAACCGTCCAAAGTCAATTGCTTCTTAACATATC 360
Query 346 TCGTACAATTACTCATCTATGGTCTCAGCTCCGTATAGTGAACATTGGAGAAATCTCCGC 405
|||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 361 TCGTACAATTACGCATCTATGGTATCAGCTCCGTATAGTGAGCATTGGAGGAATCTCCGA 420
Query 406 CGTATCGGCGCCGTCGAGATTTTCTCCAGTCACCGGCTTAATAGCTTTTCCTCTATCCGC 465
||||| |||||||||||||||||||||| ||| |||||||||||||||| | ||||||||
Sbjct 421 CGTATTGGCGCCGTCGAGATTTTCTCCAATCATCGGCTTAATAGCTTTTACACTATCCGC 480
Query 466 CGCGACGAGGCCCGGCGACTTATAGTTCGTCTCTCTCAG-----AA-CTCTTTACTCGAA 519
||||||||| |||||||||||| | ||||||||||| | || | ||| |||||||
Sbjct 481 CGCGACGAGATCCGGCGACTTATCGCTCGTCTCTCTCGGTCTCCAAACGCTTCACTCGAA 540
Query 520 TTTGCAAAGGTTGAGATGAATTCAGTGTTATCTAATTTAGCATTCAACAACATTATTAGA 579
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 541 TTTGCAAAGGTTGAGATGAATTCAATGTTATCTAACTTAGCATTCAACAACATTATTAGA 600
Query 580 ATGGTGACTGGAAAATGTTACTATGGAGATGGTGCAGAGGATGATGCGGAGGCTAAACGC 639
|||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 601 ATGGTGACGGGAAAATGTTACTATGGAGATGGTGCAGAGGATGATCCTGAGGCTAAACGT 660
Query 640 GTGCGGCAGCTTATCGCGGAGGCGATGAGTTGTTTTGGTGCCGGACACGCGGCTGATCAT 699
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 661 GTGCGGCAGCTTATCGCAGAGGCGATGAGTTGTTTTGGTGCAGGACATGCGGCTGATCAT 720
Query 700 TTACCGGTCTTGAGATGGATTACAGGTTTCGAGAGGCGGGTAAAGAAGATTGCTGGTAGG 759
|||||| | ||| |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 721 TTACCGATGTTGCGATGGATTACAGATTTCGAGAGGCGGGTAAAGAAGATTGCTGCTAGG 780
Query 760 CTTGATGAGTTCTTCCAGGGATTGGTTGATGAGAAACGAGCGGCAAAGGAGAAG--G-AG 816
||||||||||| ||||| ||||||||||||||||||| | ||||||||||||| | ||
Sbjct 781 CTTGATGAGTTTTTCCAAAGATTGGTTGATGAGAAACGTGTGGCAAAGGAGAAGAAGGAG 840
Query 817 AATACGATGATTGATCACTTGCTTTCTTTGCAAGAATCCCAACCTGAGTACTATACAGAC 876
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 841 AACACGATGATTGATCACTTGCTTTCTTTGCAAGTATCCCAACCTGAGTACTACACAGAC 900
Query 877 CACACCATTAAAGGAACTATGCTCTCTCTTATACTTGCGGGGACAGATACATCAGCGGTA 936
|| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 901 CATACCATTAAAGGAACCATGCTTTCTCTTATACTTGCGGGGACTGATACATCAGCGGTA 960
Query 937 ACATTGGAATGGGCATTGTCGAGCCTGTTGAACCATCCCGAAGTACTAAAAAAGGCGAGA 996
||||||||||||||||| || ||||| |||||| |||| |||||||||||||||| ||||
Sbjct 961 ACATTGGAATGGGCATTATCAAGCCTTTTGAACAATCCTGAAGTACTAAAAAAGGTGAGA 1020
Query 997 GATGAAATCGACAATAAAATTGGCTTAGACAGGCTTTTGGAAGAATCAGACGTTCCAAAT 1056
||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1021 GATGAAATCGACAATCAAATTGGCTTGGACAGGCTTTTGGAAGAATCAGACATTCCAAAC 1080
Query 1057 CTTCCTTATCTTCAGAACATCGTCTCTGAAACGTTGCGCTTGTACCCCGCAGGGCCCTTG 1116
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1081 CTTCCTTATCTTCAGAACATTGTCTCTGAAACGTTGCGCTTGTATCCCGCTGGGCCCTTG 1140
Query 1117 TCCGTCCCGCACGTCGCATCAGAAGTTTGTAAAGTAGGAGGTTACGATATGCCGCGTGGC 1176
| ||||| ||| || ||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct 1141 TTAGTCCCACACATCTCATCAGAAGATTGTAAAGTAGGGGGTTACGATATGCCGTGTGGC 1200
Query 1177 ACGATGTTGTTGGTGAATGTGTGGGCTATACATAGAGATCCTAAGCTATGGGATGATCCG 1236
|||||||| |||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 1201 ACGATGTTATTGGTGAACGTCTGGGCTATACATAGAGATCCTAGGCTATGGGATGATCCC 1260
Query 1237 GCGAGTTTCAAGCCAGAGAGGTTCGAGAAAGAAGGAGAGACGCATAAGCTACT-AGCGTT 1295
||||||||||||||||||||||| |||||||||||||||||||||||| || | | ||||
Sbjct 1261 GCGAGTTTCAAGCCAGAGAGGTTTGAGAAAGAAGGAGAGACGCATAAGTTATTGA-CGTT 1319
Query 1296 CGGGTTAGGAAGAAGAGCTTGTCCTGGGTCCGGACTGGCTCAACGGCTAGTGAGTTTGAG 1355
|||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||
Sbjct 1320 CGGGTTAGGAAGAAGAGCGTGTCCTGGTTCCGGACTGGCTCGACGGCTAGTGAGCTTGAG 1379
Query 1356 TCTCGGGTCATTGATACAATGTTTTGAATGGGAGAGGAATGGCGAAGAAGAGGTTGATAT 1415
||||||||| ||||| |||||||||||||||||||||| ||| ||||| ||||| |||||
Sbjct 1380 TCTCGGGTCTTTGATTCAATGTTTTGAATGGGAGAGGATTGGAGAAGAGGAGGTGGATAT 1439
Query 1416 GACTGAAGGTGGAGGACTCACTATGCCTAAAGCTAATCCGTTGGTAGCCATGTGCAGAGC 1475
|||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 1440 GACTGAAGGTGGTGGACTCACAATGCCTAGAGCTATTCCGTTGGTAGCCATGTGCAGAGC 1499
Query 1476 ACGTGCCTTTGTTGGTAAAAT-CCTACACGAGTCCGCTTGATTGATTTTGTATACTTTTG 1534
||||||||||||||| ||||| || ||| ||||| | | |||||||||||||||||||
Sbjct 1500 ACGTGCCTTTGTTGGAAAAATTCC-ACATGAGTCTG---G-TTGATTTTGTATACTTTTG 1554
Query 1535 TAAATGCTAGTGCTAGCTCTATACATGTGTTTACATAT 1572
||||| ||| |||||||| |||||||||||||| ||||
Sbjct 1555 TAAATTCTATTGCTAGCTATATACATGTGTTTAGATAT 1592
> AT4G37360.1 | Symbols: CYP81D2 | cytochrome P450, family 81,
subfamily D, polypeptide 2 | chr4:17567124-17568858 REVERSE
LENGTH=1500
Length=1500
Score = 1160 bits (628), Expect = 0.0
Identities = 1151/1401 (82%), Gaps = 45/1401 (3%)
Strand=Plus/Plus
Query 139 ATCGGCCACCTCCGCCTTCTCAAACCACCGCTCCACCGTATCTTCCTCACCATCTCTAAA 198
||||| |||||||| |||||||| ||||| ||||||||| | |||||| || ||||| ||
Sbjct 121 ATCGGTCACCTCCGTCTTCTCAAGCCACCACTCCACCGTGTTTTCCTCTCCGTCTCTCAA 180
Query 199 TCCCTAAACAATTCTCCGATCTTCTCCCTCCGTCTCGGAAACAAACTCGTTTTCGTCGTC 258
|| || | | |||||||| |||||||||||||||| ||| |||| | ||||| |||
Sbjct 181 TCTTTAGGCGACGCTCCGATCATCTCCCTCCGTCTCGGCAACCGACTCCTATTCGTTGTC 240
Query 259 TCTTCAAACTCAATCGTCGAAGAATGCTTCACCAAAAACGACGTCGTTCTCGCGAATCGA 318
|||||| ||||||||| ||| ||||||||||| || ||||||||| | |||||||| |||
Sbjct 241 TCTTCACACTCAATCGCCGAGGAATGCTTCACGAAGAACGACGTCATACTCGCGAACCGA 300
Query 319 CCAAAGTCA--ATTGCTTCTAAACACATCTCGTACAATTACT-CATCTATGGTCTCAGCT 375
|||| || ||| || | ||||||||||| ||| ||| || | ||||||| |||
Sbjct 301 -CAAA-CCACCATTTCTACAAAACACATCTCATACGGCAACTCCA-CCGTGGTCTCTGCT 357
Query 376 CCGTATAGTGAACATTGGAGAAATCTCCGCCGTATCGGCGCCGTCGAGATTTTCTCCAG- 434
|||| || ||||| ||||||||||||||||| ||||||||| | |||||||||| | |
Sbjct 358 TCGTACAGCGAACACTGGAGAAATCTCCGCCGCATCGGCGCCTTAGAGATTTTCT-CGGC 416
Query 435 TCACCGGCTTAATAGCTTTTCCTCTATCCGCCGCGACGAGGCCCGGCGACTTATAGTTCG 494
||| | || ||||||||||||||||| |||||||| ||| | || | ||||||| ||
Sbjct 417 TCATAGACTCAATAGCTTTTCCTCTATTCGCCGCGATGAGATCAGGAGGCTTATAGGCCG 476
Query 495 TCTCTCT-CAGAACTCTTTAC-T-CGAATTTGCAAAGGTTGAGATGAATTCAGTGTTATC 551
||||| | | |||||| || | | || ||| | |||||||||||||| ||| |||| ||
Sbjct 477 TCTCT-TACGGAACTC-TT-CTTACGGGTTTACTAAGGTTGAGATGAAATCAATGTTTTC 533
Query 552 TAATTTAGCATTCAACAACATTATTAGAATGGTGA-CTGGAAAATGTTACTATGGAGATG 610
| | ||| ||||||||||||| ||||||||| | | | ||||| |||||||||||||| |
Sbjct 534 TGACTTAACATTCAACAACATCATTAGAATGCT-AGCCGGAAAGTGTTACTATGGAGACG 592
Query 611 GTGCAGAGGATGATGCGGAGGCTAAACGCGTGCGGCA-GCTTATCGCGGAGGCGATGAGT 669
|| ||| ||||| ||||||| |||||||||||| | ||||||||| ||||| ||||||
Sbjct 593 GTAAAGAAGATGACCCGGAGGCCAAACGCGTGCGG-ACGCTTATCGCAGAGGCTATGAGT 651
Query 670 TGTTTTGGTGCC-GGACACGCGGCTGATCATTTACCGGTCTTGAGATGGATTACAGGTTT 728
| || |||| || ||| |||| |||||| || ||||| || ||| ||||| ||| ||
Sbjct 652 TCTTCTGGT-CCTGGAAACGCTGCTGATTATATACCGATCCTGACTTGGATCACATATTC 710
Query 729 CGAGAGGCGGGTAAAGAAGATTGCTGGTAGGCTTGATGAGTTCTTCCAGGGATTGGTTGA 788
||||| ||| |||||||| | ||||||||||||||||||||||| || |||||||| ||
Sbjct 711 CGAGACACGGATAAAGAAGCTCGCTGGTAGGCTTGATGAGTTCTTGCAAGGATTGGTCGA 770
Query 789 TGAGAAACGAG-CGGCAAA-G-G-AGAAGGAGAATACGATGATTGATCACTTGCTTTCTT 844
||||||||||| || ||| | | |||||||||| |||||| ||||||||||||||| |
Sbjct 771 TGAGAAACGAGAAGG-AAAGGAGAAGAAGGAGAACACGATGGTTGATCACTTGCTTTGTC 829
Query 845 TGCAAGAATCCCAACCTGAGTACTATACAGACCACACCATTAAAGGAACTATGCTCTCTC 904
|||||||| ||||||| |||||||| | |||| || ||| |||||||| ||||| ||||
Sbjct 830 TGCAAGAAACCCAACCAGAGTACTACATGGACCGCATCATCAAAGGAACCATGCTTTCTC 889
Query 905 TTATA-CTTGCGGGGACAGATACATCAGCGGTAACATTGGAATGGGCATTGTCGAGCCTG 963
||||| | | |||||| |||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 890 TTATAGC-AGGGGGGACTGATACAACAGCGGTAACATTGGAATGGGCATTGTCAAGCTTG 948
Query 964 TTGAACCATCCCGAAGTACTAAAAAAGGCGAGAGATGAAATCGACAATAA-AATTGGCT- 1021
|||||| |||| || || || || ||||| ||||| || |||||| | || || || |
Sbjct 949 TTGAACAATCCTGAGGTGCTGAACAAGGCCAGAGACGAGATCGAC-AGAATGATCGG-TG 1006
Query 1022 TAGACAGGCTTTTGGAAGAATCAGACGTTCCAAATCTTCCTTATCTTCAGAACATCGTCT 1081
|||||||||||||||| ||||||||| | ||||||||||||||||| |||||||| || |
Sbjct 1007 TAGACAGGCTTTTGGAGGAATCAGACATCCCAAATCTTCCTTATCTACAGAACATTGTAT 1066
Query 1082 CTGAAACGTTGCGCT-TGTACCCCGCAGGGCCCT-TGTCCG-TCCCGCACGTCGCATCAG 1138
|||||||||| || | ||||||| ||| | |||| || | | | || ||||| || || |
Sbjct 1067 CTGAAACGTTACG-TCTGTACCCTGCA-GCCCCTATG-CTGCTTCCTCACGTAGCCTC-G 1122
Query 1139 -AAGTTTGTAAAGTAGGAGGTTACGATATGCCGCGTGGCACGATGTTGTTG-GTGAATGT 1196
||| ||||||||| || || ||||||||||||||||| |||||| | ||| | ||||
Sbjct 1123 AAAGATTGTAAAGTTGGGGGATACGATATGCCGCGTGGGACGATGCTATTGACT-AATGC 1181
Query 1197 GTGGGCTATACATAGAGATCCTAAGCTATGGGATGATCCGGCGAGTTTCAAGCCAGAGAG 1256
||||||||||| || ||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 1182 ATGGGCTATACACAGGGATCCCCTGCTATGGGATGATCCAACGAGCTTCAAGCCAGAGAG 1241
Query 1257 GTTCGAGAAAGAAGGAGAGACGCATAAGCTACTAGC-GTTCGGGTTAGGAAGAAGAGCTT 1315
||||||||||||||||||| | | |||||| | || ||||||| |||||||||| || |
Sbjct 1242 GTTCGAGAAAGAAGGAGAGGCTAAGAAGCTAAT-GCCGTTCGGGCTAGGAAGAAGGGCAT 1300
Query 1316 GTCCTGGGTCCGGACTGGCTCAACGGCTAGTGAGTTTGAGTCTCGGGTCATTGATACAAT 1375
||||||| ||||| ||||||| |||||||||| |||||||||||||| ||||| ||||
Sbjct 1301 GTCCTGGATCCGGTTTGGCTCAGCGGCTAGTGACCTTGAGTCTCGGGTCTTTGATTCAAT 1360
Query 1376 GTTTTGAATGGGAGAGGAATGGCGAAGAAGAGGTTGATATGACTGAAGGTGGAGGACTCA 1435
|||||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 1361 GTTTTGAATGGGAGAGGATTGGAGAAGAAGAGGTCGATATGACTGAAGGTCCAGGACTCA 1420
Query 1436 CTATGCCTAAAGCTA-ATCCGTTGGTAGCCATGTGCAGAGCACGTGCCTTTGTTGGTAAA 1494
| ||||| ||||||| | ||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 1421 CAATGCCGAAAGCTAGA-CCGTTGGAAGCTATGTGCAGAGCACGTGACTTTGTTGGTAAA 1479
Query 1495 ATCCTACACGAGTCCGCTTGA 1515
||| ||| ||| ||| |||||
Sbjct 1480 ATCTTACCCGACTCCTCTTGA 1500
> AT1G18810.1 | Symbols: | phytochrome kinase substrate-related
| chr1:6485596-6487030 REVERSE LENGTH=1435
Length=1435
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 54 AATCCTAATCCTAATCCTCATCCTCATC 81
||||||||||||||||||||||||||||
Sbjct 420 AATCCTAATCCTAATCCTCATCCTCATC 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5