BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475764
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66680.1 | Symbols: AR401 | S-adenosyl-L-methionine-dependen... 2013 0.0
> AT1G66680.1 | Symbols: AR401 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr1:24866095-24868992
REVERSE LENGTH=1438
Length=1438
Score = 2013 bits (1090), Expect = 0.0
Identities = 1232/1296 (95%), Gaps = 27/1296 (2%)
Strand=Plus/Plus
Query 26 TTTTTTCTCTGTGGCGTTGAAGGAATCTGCGATGGCGGGAATCAGATTGCTACCGGAAGA 85
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 78 TTTATTCTCTGTGGCGTT----GAATCTGCGATGGCGGGAATCAGATTGCTACCGGAAGA 133
Query 86 ACCTGAGACGACTCCTCAACAACAAGCCAGAGCCTCCGCCGCCGCGGTGACAACG---AC 142
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 134 ACCTGAGACGACTCCTCAACAACAAGCCAGAG---CCGCCGCCGCGGTGACAACGACAAC 190
Query 143 GACGGATAGTTTGGCTTCCGATGACGATCGATCTATTGCGGCGGATTCGTGGTCGATCAA 202
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 191 AACGGATAGTTTGGCTTCCGATGACGATCGATCTATCGCGGCGGATTCGTGGTCGATCAA 250
Query 203 AAGCGAGTATGGAAGCACTCTCGATGACGATCAACGTCACGCCGATGCCGCCGAGGCTCT 262
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 AAGTGAGTATGGAAGCACTCTCGATGACGATCAACGTCACGCCGATGCCGCCGAGGCTCT 310
Query 263 CTCCTCCGCTAACTTCCGCGTCTCTTCCGATTACAGTTCTGATAAGGAAGAGCCAGATGC 322
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CTCGTCCGCTAACTTCCGTGTCTCTTCCGATTACAGTTCTGATAAGGAAGAGCCAGATGC 370
Query 323 TGATGGAGGAGGTCAATCAATGCTTGGTCTTCTAAGCTATTGGGATGCTGCGTATTCCGA 382
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 371 TGATGGAGGAGGTCAATCAATGCTTGGTCTTCAAAGCTATTGGGATGCAGCGTATTCCGA 430
Query 383 TGAGCTTACTAATTTCAGGGAGCATGGTCATGCTGGCGAAGTTTGGTTTGGAGATGATGT 442
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 431 TGAGCTTACTAATTTCAGAGAGCATGGTCATGCTGGTGAAGTTTGGTTTGGAGATGATGT 490
Query 443 TATGGAGATTGTTACTTCTTGGACTAAAGACTTATGCGTTGAGATTTCTCAGAA-AAACA 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 491 GATGGAGATTGTTACTTCTTGGACTAAAGACTTATGCGTTGAGATTTCTCA-AAGAAACA 549
Query 502 TGTCTGTTTCTGACAACGATGTTACGACGGAGGTGAATGATCAGGCTGAGAAGTATTTGT 561
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 550 TGTCTGTTTCTGAAAACGATGTTACGACAGAGGTGAATGATCAGGCTGATAAGTATTTGT 609
Query 562 CTAGTTGGAATGTGCTTGATCTTGGTACTGGAAATGGCTTACTCCTTCATCAACTTGCTA 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CTAGTTGGAATGTGCTTGATCTTGGTACTGGAAATGGCTTACTCCTTCATCAACTTGCTA 669
Query 622 AGGAAGGGTTCTCTGATTTAACCGGGACTGATTATAGTGAAGGTGCGGTAGAACTCGCTC 681
||||||||||||||||||||||||| |||||||| ||||| || || |||||||||||||
Sbjct 670 AGGAAGGGTTCTCTGATTTAACCGGAACTGATTACAGTGACGGGGCTGTAGAACTCGCTC 729
Query 682 AACATCTTTCCCAACGTGATGGCTTTCCTAATATCCGTTTCATGGTTGATGATATCCTTG 741
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 730 AACATCTTTCCCAACGTGATGGCTTTCCAAATATCCGTTTCATGGTTGATGATATCCTTG 789
Query 742 ACACAAAATTGGAACAGCAGTTCAAGCTGGTAATGGACAAAGGAACTTTAGATGCTATTG 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 ACACAAAATTGGAACAGCAGTTCAAGCTGGTAATGGACAAAGGAACTTTAGATGCTATTG 849
Query 802 GTTTGCATCCTGATGGCCCTGTCAAAAGAGTCATGTACTGGGATTCAGTGTCCAAGCTGG 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GTTTGCATCCTGATGGCCCTGTCAAAAGAGTCATGTACTGGGATTCAGTGTCCAAGCTGG 909
Query 862 TTGCTCCTGGTGGAATATTGGTCATCACATCGTGTAACCACACAAAGGACGAACTGGTGG 921
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 910 TTGCTCCTGGTGGAATATTGGTGATCACATCGTGTAACCACACAAAGGACGAACTGGTGG 969
Query 922 AAGAAGTAGAGAATTTCAACATCAGAAAATCCAACTTATGTAGAGGAGATGGAAATGACG 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 AAGAAGTAGAGAATTTCAACATCAGAAAATCCAACTTATGTAGAGGAGATGGAAATGACG 1029
Query 982 CTACCAATGCGCTTTCCTCGGGCTCTGAAGCTGCAAGCAGAATTGATCAACCTCCGTTTG 1041
| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CAAACAATGTACTTTCCTCTGGCTCTGAAGCTGCAAGCAGAATTGATCAACCTCCGTTTG 1089
Query 1042 AGTATCTCAGCCACGTTAGGACATACCCGACGTTCATGTTTGGTGGGTCTGTAGGATCGC 1101
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1090 AGTATCTCAGCCATGTTAGGACATACCCGACGTTCATGTTCAGTGGGTCTGTAGGATCGC 1149
Query 1102 GTGTGGCAACTGTTGCTTTTCTGCGGAAGTGAGAACAAACCTGTTGATGGAttttttttt 1161
|||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 1150 GTGTGGCAACGGTTGCTTTTCTGCGGAAGTGAGAACAAACCTGTTG--G-ATTTGTTTT- 1205
Query 1162 ttGTTTAACATAATGCTCAGACCTTTTCTCATCTTTTATATGTTGGTGTCAAGCAAGACT 1221
|||||||||| ||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1206 ------AACATAATGCCCAGACCTTTTCTCTTCTTTT-TATGTTGGTGTCAAGCAAGACT 1258
Query 1222 GTTGATGGTGCTTTTGGGAGCTCTTAATAACCTTTAAATTTCTTTTCAA-AGAAAACTGA 1280
||||||| |||||||||||| |||||||||||| |||| ||||||| || ||||||||||
Sbjct 1259 GTTGATG-TGCTTTTGGGAGTTCTTAATAACCTCTAAAGTTCTTTT-AAGAGAAAACTGA 1316
Query 1281 TTTGGTCATATATCAGTGttttttttcttt-ttttt 1315
||||||||||| |||||||||||||||||| |||||
Sbjct 1317 TTTGGTCATATGTCAGTGTTTTTTTTCTTTCTTTTT 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64708502505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5