BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475766
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66700.1 | Symbols: PXMT1 | S-adenosyl-L-methionine-dependen... 1886 0.0
AT1G66690.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1552 0.0
AT1G66710.1 | Symbols: | pseudogene, similar to AtPP protein, ... 614 8e-175
> AT1G66700.1 | Symbols: PXMT1 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr1:24873291-24874758
REVERSE LENGTH=1299
Length=1299
Score = 1886 bits (1021), Expect = 0.0
Identities = 1197/1282 (93%), Gaps = 11/1282 (1%)
Strand=Plus/Plus
Query 1 ACTACTCTCATCATAAACCAAAGTATTAAACAAGAAAAGAAGTTTGAGAAAAagagagag 60
|||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||
Sbjct 1 ACTACTCTCATCATAAACCAAAGTATCAAACAATAAAAGATTTTTGAGAAAAA-AGAGAG 59
Query 61 agagagaTCATGACTACTACTCCAGATTGGATCATGATTGGAGGAGATGGTCCTGAGAGT 120
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 60 AGAGATATCATGACTACTACTCCAGATTGGATCATGATTGGAGGAGACGGTCCTGAGAGT 119
Query 121 TACAACCAACAGTCCTCGTATCAGAGAGCGTTGTTGGAAGCTG-CAAAGGACAAGATGAC 179
|| |||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 120 TATAACCAACAATCCTCGTATCAGAGAGCATTGTTGGAAGC-GACAAAGGACAAGATGAC 178
Query 180 CGAGGCGATCTCAGCCAATCTCGACCTAGACTTGATTTCGAATCGCTTCATTGTAGCGGA 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CAAGGCGATCTCAGCCAATCTCGACCTAGACTTGATTTCGAATCGCTTCATTGTAGCGGA 238
Query 240 TTTCGGTTGTGCGAGTGGACCTAACACTTTTGTGGCAGTTCAAAACATAATAGATGCGGT 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTTCGGTTGTGCAAGTGGACCTAACACTTTTGTGGCAGTTCAAAACATAATAGATGCGGT 298
Query 300 AGAAGAAAAGTACCGTAGAGAAACCGGACAAAACCCCG-ATGATAACATCGAGTTCCAAG 358
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 299 AGAAGAAAAGTACCGTAGAGAAACCGGACAAAACCCGGCA-GATAACATCGAGTTCCAAG 357
Query 359 TCCTATTCAACGACTTCAGCCTGAACGATTTCAACACTCTCTTCCAGACACTTCCTCCAG 418
|||| ||||| || |||||||| || ||||||||||||||||||||||||||||| || |
Sbjct 358 TCCTCTTCAATGATTTCAGCCTCAATGATTTCAACACTCTCTTCCAGACACTTCCACCCG 417
Query 419 GGAGAAAATACTTTAGCGCTGGGGTTCCTGGTTCCTTCTTTGAACGTGTTCTTCCGAAGG 478
| |||| |||||| |||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 418 GAAGAAGATACTTCAGCGCTGGAGTTCCTGGTTCCTTCTTCGAACGTGTTCTTCCTAAGG 477
Query 479 AGAGTTTCCACATCGGAGTCATGAGTTATGCATTCCATTTCACCTCCAAAATCCCCAAAG 538
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 478 AGAGTTTCCACATCGGAGTCATGAGTTACGCGTTCCATTTCACCTCCAAAATCCCCAAAG 537
Query 539 GAATCATGGACCGCGACTCTCCCTTGTGGAACAAAGACATGCAATGCACCGGGTTCAACC 598
| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 538 GGATTATGGACCGCGACTCTCCCTTGTGGAACAAAGACATGCAGTGCACGGGGTTCAACC 597
Query 599 CAGCTGTCAAGAAAGCGTACCTTGATCAGTACTCTATTGACACCAAAATTCTTTTGGATG 658
| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 598 CCGCTGTCAAGAAAGCGTATCTTGACCAGTACTCTATCGACACCAAAATTCTTTTAGATG 657
Query 659 CTAGAGCTGAAGAGCTCGTACCCGGGGGATTGATGTTGCTTTTAGGATCTTGTCTAAGAG 718
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 658 CTAGAGCTGAAGAGCTCGTGCCCGGGGGGTTGATGTTGCTTTTAGGATCGTGTCTAAGAG 717
Query 719 ACGGAGTTAAGATGTCCGAGACCCCTAAAGGAACTGTCATGGATTTTATTGGAGAATCAC 778
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 718 ACGGAGTTAAGATGTCCGAGACCCCTAAAGGAACTGTAATGGATTTTATTGGAGAATCTC 777
Query 779 TTATTGATCTTGCTCAACAGGGTGTCACCGAGCAAGAAAAGGTGGACACATTCAAAACCT 838
||| ||||||||| |||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 778 TTAGCGATCTTGCTAAACAGGGTGTCACCGAGCAAGAGAAGGTGGACACTTTCAGAACCT 837
Query 839 CAATTTACTTTGCAGAGCAAGGCGAGATAAGGCAAATCATTGAAGAGAATGGGAAGTTCA 898
|||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 838 CAATTTACTTTGCAGAACAAGGTGAGATAAGGCAAATCATTGAGGAGAATGGGAAGTTCA 897
Query 899 CAATCGA-GCTTTTCGAGGATATCATTCACTCTAAGAATGAGTTTCCGCTAGACCCCAAG 957
||||||| |||||| || |||||||||||| |||| || |||||||| | |||||||||
Sbjct 898 CAATCGAGGCTTTT-GAAGATATCATTCACGCTAAAAACGAGTTTCCTTTTGACCCCAAG 956
Query 958 ACATTGGCCATCTCTTTCAAGGCCTTCTATGGTGCTTTCATTTCCGCACATTTTGGAGTC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ACATTGGCCATCTCTTTCAAGGCCTTCTATGGTGCTTTCATTTCCGCACATTTTGGAGTC 1016
Query 1018 GAAGTCATGAGGAAAGCCTTTGAGCTTGTCGAGGTCAAGGCACGCGAACAGATTTCTCGC 1077
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1017 GAAGTCATGAGGAAAGCCTTTGAGCTTGTTGAGGTCAAGGCACGCGAACAGATTTCTCGC 1076
Query 1078 CTACATAA-TGCCAAAGACGGAATGCAGTACCTCATCGTGCTTCGCAAGAACTAATCCGT 1136
|| ||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1077 CTCCATAACT-CCAAACCCGGAATGCAGTACCTCATCGTGCTTCGCAAGAACTAAACCGT 1135
Query 1137 GATCGAAATATATTGATA-ATGTGATTTCCTCCATTGTTGCTTCTCTTCTTTCGTCGATC 1195
|||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1136 GATCCAAATATATTGTTATATGTGATTTCCTCCATTGTTGCTTCTCTTCTTTCGTCTATC 1195
Query 1196 TCATGGTGCATTGTCGTCTTTTTCTTCTTGCTGTTTTGTCTTAGTGTCTTTGTACTCTCC 1255
| ||||||| ||||||||| || ||||||| |||||||||||| ||||||||| |||||
Sbjct 1196 TTATGGTGCTTTGTCGTCTCTT-CTTCTTGTTGTTTTGTCTTAACGTCTTTGTATTCTCC 1254
Query 1256 CCTATCCTTCAAATTAATAAAA 1277
|||||||| ||||| |||||||
Sbjct 1255 CCTATCCTACAAATGAATAAAA 1276
> AT1G66690.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:24869554-24870850
REVERSE LENGTH=1114
Length=1114
Score = 1552 bits (840), Expect = 0.0
Identities = 1026/1117 (92%), Gaps = 7/1117 (1%)
Strand=Plus/Plus
Query 15 AAACCAAAGTATTAAACAAGAAAAGAAGTTTGAGAAAAagagagagagagagaTCATGAC 74
|||| |||| |||||||||||||||||||||||| ||| | ||||||| | || |||||
Sbjct 1 AAACTAAAG--TTAAACAAGAAAAGAAGTTTGAGATAAA-ACAGAGAGATATATAATGAC 57
Query 75 TACTACTCCAGATTGGATCATGATTGGAGGAGATGGTCCTGAGAGTTACAACCAACAGTC 134
|||||||| |||||||||||||||||| ||| |||| ||||| |||||||||||||||||
Sbjct 58 TACTACTCAAGATTGGATCATGATTGGTGGATATGGCCCTGAAAGTTACAACCAACAGTC 117
Query 135 CTCGTATCAGAGAGCGTTGTTGGAAGCTGCAAAGGACAAGATGACCGAGGCGATCTCAGC 194
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 118 ATCGTATCAGAGAGCTTTGTTGGAAGCGGCAAAGGACAAGATGACCGAGGCGATCTCCGC 177
Query 195 CAATCTCGACCTAGACTTGATTTCGAATCGCTTCATTGTAGCGGATTTCGGTTGTGCGAG 254
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 CAACCTCGACCTAGACTTGATTTCGAATCGCTTCATTGTAGCGGATTTCGGTTGTGCAAG 237
Query 255 TGGACCTAACACTTTTGTGGCAGTTCAAAACATAATAGATGCGGTAGAAGAAAAGTACCG 314
|||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| |
Sbjct 238 TGGACCTAACACTTTTGTGGCAGTCCAAAACATAATAGATGCCGTGGAAGAGAAGTATCT 297
Query 315 TAGAGAAACCGGACAAAACCCCGATGATAACATCGAGTTCCAAGTCCTATTCAACGACTT 374
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 298 TAGAGAAACCGGACAAAACCCGGAGGATAACATCGAGTTCCAAGTCCTCTTCAACGACTT 357
Query 375 CAGCCTGAACGATTTCAACACTCTCTTCCAGACACTTCCTCCAGGGAGAAAATACTTTAG 434
|| | || || ||||||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 358 AAGAATCAATGACTTCAACACTCTCTTCCAGACACTCCCTCCGGGGAGAAGATACTTTAG 417
Query 435 CGCTGGGGTTCCTGGTTCCTTCTTTGAA-CGTGTTCTTCCGAAGGAGAGTTTCCACATCG 493
||| |||||||||||||||||| || || ||||||||||| ||| |||||||||||||||
Sbjct 418 CGCCGGGGTTCCTGGTTCCTTC-TTCAACCGTGTTCTTCCTAAGCAGAGTTTCCACATCG 476
Query 494 GAGTCATGAGTTATGCATTCCATTTCACCTCCAAAATCCCCAAAGGAATCATGGACCGCG 553
|||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 477 CAGTCATGAGTTACGCATTCCTTTTCACCTCCAAAATCCCCAAAGGGATCATGGACCGCG 536
Query 554 ACTCTCCCTTGTGGAACAAAGACATGCAATGCACCGGGTTCAACCCAGCTGTCAAGAAAG 613
||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 537 ACTCTCCGTTGTGGAACAAAGACATGCAGTGCACCGGGTTCAACCCCGCTGTGAAGAAAG 596
Query 614 CGTACCTTGATCAGTACTCTATTGACACCAAAATTCTTTTGGATGCTAGAGCTGAAGAGC 673
| || ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 597 CCTATCTTGAGCAGTACTCTATTGACACCAAAAACCTTTTGGATGCTAGAGCTGAGGAGC 656
Query 674 TCGTACCCGGGGGATTGATGTTGCTTTTAGGATCTTGTCTAAGAGACGGAGTTAAGATGT 733
|| | ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 657 TCATGCCCGGGGGATTGATGTTGCTTTTAGGATCGTGTATGAGAGACGGAGTTAAGATGT 716
Query 734 CCGAGACCCCTAAAGGAACTGTCATGGATTTTATTGGAGAATCACTTATTGATCTTGCTC 793
||||||||| ||||||||| || |||||||||||||||||||| |||| ||| |||||||
Sbjct 717 CCGAGACCCTTAAAGGAACAGTAATGGATTTTATTGGAGAATCTCTTAATGACCTTGCTC 776
Query 794 AACAGGGTGTCACCGAGCAAGAAAAGGTGGACACATTCAAAACCTCAATTTACTTTGCAG 853
|| ||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||
Sbjct 777 AAAAGGGTGTCACCGAACAGGAAAAGGTGGACACTTTCAAAACCTCAATCTACTTTGCAG 836
Query 854 AGCAAGGCGAGATAAGGCAAATCATTGAAGAGAATGGGAAGTTCACAATCGA-GCTTTTC 912
| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 837 AACAAGGCGAGATAAGGCAAATCATTGAGGAGAATGGGAAGTTCACAATCGAGGC-TTTC 895
Query 913 GAGGATATCATTCACTCTAAGAATGAGTTTCCGCTAGACCCCAAGACATTGGCCATCTCT 972
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GAGGATATCATTCACTCTAAGAATGAGTTTCCGCTAGACCCCAAGACATTGGCCATCTCC 955
Query 973 TTCAAGGCCTTCTATGGTGCTTTCATTTCCGCACATTTTGGAGTCGAAGTCATGAGGAAA 1032
||||||||||| ||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 956 TTCAAGGCCTTATATGGTGCTTTTATATCCGCACATTTTGGAATCGAAGTCATGAGGAAA 1015
Query 1033 GCCTTTGAGCTTGTCGAGGTCAAGGCACGCGAACAGATTTCTCGCCTACATAATGCCAAA 1092
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 1016 GCCTTTGAGCTTGTTGAGGTCAAGGCACGCGAACAGATTTCTCGCCTCCATAAGGTCAAA 1075
Query 1093 GACGGAATGCAGTACCTCATCGTGCTTCGCAAGAACT 1129
||| ||||| |||||||||||||||||||||||||
Sbjct 1076 CCCGGGATGCAATACCTCATCGTGCTTCGCAAGAACT 1112
> AT1G66710.1 | Symbols: | pseudogene, similar to AtPP protein,
blastp match of 55% identity and 1.0e-92 P-value to GP|7657877|emb|CAB89183.1||AJ245479
AtPP protein {Brassica napus var.
napus} | chr1:24878865-24880220 REVERSE LENGTH=1356
Length=1356
Score = 614 bits (332), Expect = 8e-175
Identities = 571/682 (84%), Gaps = 33/682 (5%)
Strand=Plus/Plus
Query 133 TCCTC-GTAT-CAGAGAGCGTTGTTGGAAGCT-GCAAAGGACAAGATGACCGAGGCGATC 189
||||| ||| |||||||| ||| | |||| | | ||||||||||||||| |||||| |
Sbjct 263 TCCTCTTTATACAGAGAGCATTGCTAGAAG-TGGTGAAGGACAAGATGACCAAGGCGAAC 321
Query 190 TCAGCCAATCTCGA-CCTAGACTTGATTTCGAATCGCTTCATTGTAGCGGATTTCG-GTT 247
||||| || ||| | ||| || || ||||||| || ||| | |||| || |||| ||
Sbjct 322 TCAGCGAACCTC-AGCCTCGATTTCCTTTCGAACCGGTTCGGTATAGCAGACTTCGATTT 380
Query 248 GTGCGAGTGGACCTAACACTTTTGTGGCAGTTCAAAACATAATAGATGCGGTAGAAGAAA 307
||||||||||||||||||||||||| |||| ||||||||| | | |||||||||||
Sbjct 381 TTGCGAGTGGACCTAACACTTTTGTGTCAGTCCAAAACATACT---T--GGTAGAAGAAA 435
Query 308 AGTACCGTAGAGAAACCGGACAAAACCCCG--ATGA--TA-ACATCGAGTTCCAAGTCCT 362
| |||| |||||| | |||||||||||||| || | || ||||||| ||||| || ||
Sbjct 436 AATACCATAGAGAGA-CGGACAAAACCCCGACAT-ACGTACACATCGATTTCCATGTTCT 493
Query 363 ATTCAACGACTTCAGCCTGAACGATTTCAACACTCTCTTCCAGACACTTCCTCCAGGGAG 422
||||||||||| ||| | || ||||||||||||||||| || |||||| ||| || |||
Sbjct 494 CTTCAACGACTTTAGCATCAATGATTTCAACACTCTCTTTCAAACACTTTCTCTAGAGAG 553
Query 423 AAAATACTTTAGCGCTGGGGTTCCTGGTTCCTTCTTTGAACGTGTTCTTCCGAAGGAGAG 482
|| ||||| ||||||||| ||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 554 AAGATACTATAGCGCTGGAGTTCCTGGTTCCTTCTTCGACCGTGTTCTTCCTAAGGAAAG 613
Query 483 TTTC-CACATCGGAGTCATGAGTTATGCATTCCATTTCACCTCCAAAATCCCCAAAG-GA 540
|||| |||| |||||||||||||| ||||||| |||||||| ||||| ||||||| |
Sbjct 614 TTTCTAACATAGGAGTCATGAGTTACACATTCCACTTCACCTCGAAAATACCCAAAGCG- 672
Query 541 ATCATGGACCGCGACTCTCCCTTGTGGAACAAAGACATGCAATGCACCGGGTTCAACCCA 600
||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |
Sbjct 673 ATCATGGACCGCGACTCTCCCTTGTGGAACAAAGACATGCAGTGCATCGCGTTCAACCAA 732
Query 601 GCTGTCAAGAAAGCGTACCTTGATCAGTACTCTATTGACACCAA-AATTCTTTTGGATGC 659
|| || ||||| |||| |||||||| |||||||| |||||||| ||| || | ||||||
Sbjct 733 GCGGTAAAGAATGCGTGTCTTGATCAATACTCTATCGACACCAAGAAT-CTAT-GGATGC 790
Query 660 TAGAGCTGAAGAGCTCGTACCCGGGGGATTGATGTTGCTTTTAGGATCT-TGTCTAAGAG 718
|||||||||||||||||| ||||| |||||||||||||||||||||| | ||||| ||||
Sbjct 791 TAGAGCTGAAGAGCTCGTGCCCGGAGGATTGATGTTGCTTTTAGGAT-TGTGTCTTAGAG 849
Query 719 ACGGAGTTAA----GATGTCCGAGACCCCTAAAGGAA-CTGTCATGGATTTTATTGGAGA 773
||| |||||| ||||||||||||||||||||||| | || ||||| ||||| |||||
Sbjct 850 ACGAAGTTAATTAAGATGTCCGAGACCCCTAAAGGAATC-GTAATGGACTTTATCGGAGA 908
Query 774 ATCACTTATTGATCTTGCTCAA 795
| | |||| |||||||||||||
Sbjct 909 ACCTCTTAGTGATCTTGCTCAA 930
Score = 67.6 bits (36), Expect = 3e-10
Identities = 50/56 (89%), Gaps = 3/56 (5%)
Strand=Plus/Plus
Query 1220 TTCTTGCTGTT-TTGTC-TTAGTGTCTTTGTACTCTCCCCTATCCTTCAAATTAAT 1273
||||| | ||| | ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1302 TTCTT-CAGTTCTCGTCTTTAGCGTCTTTGTACTCTCCCCTATCCTTCAAATTAAT 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62800881795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5