BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475769
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydro... 1258 0.0
AT5G40580.1 | Symbols: PBB2 | 20S proteasome beta subunit PBB2 ... 911 0.0
> AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr3:10152517-10155342
FORWARD LENGTH=1230
Length=1230
Score = 1258 bits (681), Expect = 0.0
Identities = 787/839 (94%), Gaps = 3/839 (0%)
Strand=Plus/Plus
Query 4 TCAATTT-AAAAAATGTCGCAATCAACAGTAGATGTTTCGGCAAAGGGTGGGTTTAGCTT 62
||||||| ||||||||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct 106 TCAATTTGAAAAAATGTCGCAATCAACCGTAGATGTTCCGCCAAAGGGTGGGTTTAGCTT 165
Query 63 CGACT-TGTGTAAGAGAAATGAGATGCTTACACAAGAGGGTCTTAAAGCTCCGTCTTTCT 121
||| | |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
Sbjct 166 CGA-TCTGTGTAAGAGAAATGATATGCTTACACAAAAGGGTCTTAAAGCTCCGTCTTTTT 224
Query 122 TGAAGACCGGAACAACCATTGTCGGTTTGATTTTCAAGGATGGTGTGATACTAGGGGCAG 181
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 225 TGAAGACTGGAACAACCATTGTTGGTTTGATTTTCAAGGATGGTGTGATACTAGGGGCAG 284
Query 182 ATACCCGAGCGACCGAGGGGCCCATTGTTGCTGATAAAAACTGTGAAAAGATTCACTATA 241
|||||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 285 ATACCCGAGCAACTGAGGGGCCAATTGTTGCTGATAAGAACTGTGAGAAGATTCACTATA 344
Query 242 TGGCACCAAACATATATTGTTGTGGTGCAGGAACCGCGGCTGACACTGAAGCAGTTACTG 301
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||
Sbjct 345 TGGCACCAAACATATATTGCTGTGGTGCAGGAACTGCGGCTGATACTGAAGCAGTCACTG 404
Query 302 ATATGGTCAGCTCACAGCTGCGATTGCATCGTTACGAGACTGGTCGTGACTCTCGGGTTA 361
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 405 ATATGGTCAGCTCACAGCTGCGATTGCATCGTTACCAGACTGGTCGAGACTCTCGGGTCA 464
Query 362 TTACTGCTTTAACTCTCCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCTGCTG 421
|||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 465 TTACTGCTTTGACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGTCATGTCTCTGCTG 524
Query 422 CGCTTGTGCTTGGTGGAGTTGATATCACTGGCCCACATCTGCATACTCTATACCCAAACG 481
| ||||| || |||||||||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 525 CTCTTGTACTCGGTGGAGTTGATATCACTGGTCCACATCTGCATACTATATACCCACACG 584
Query 482 GTTTAACTGAAACTCTTCCATTTGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTG 541
||| |||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 585 GTTCAACTGACACTCTTCCATTCGCCACAATGGGTTCGGGTTCTCTTGCTGCTATGTCTG 644
Query 542 TGTTTGAGGCGAAGTACAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGTTGGTCGCTG 601
|||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 645 TGTTTGAGGCAAAGTATAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGCTGGTCGCTG 704
Query 602 AAGCCATATGCTCTGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTAGACATCTGCG 661
|| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 705 AATCCATATGCTCGGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTGGACATCTGCG 764
Query 662 TGATCACAAAGGGGAACAAGGAATACCTGAGGAATTACATGGAACCAAACCCAAGAACCT 721
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 765 TGATCACAAAGGGGAACAAGGAATATCTCAGGAACTACATGGAACCAAACCCAAGAACCT 824
Query 722 ATGTCAGCAGCAAAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCA 781
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 825 ATGTCAGCAGCAAAGGCTATTCCTTCACCAAGAAAACTGAGGTTCTTCTCACCAAAATCA 884
Query 782 CCCCATTGCTGGAGCGAGTCGAAATTACAGAAGTCGGTGAAGCTATGGAGGAATGATTC 840
||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct 885 CCCCATTGCTGGAGCGAGTCGAAATCACAGAAGTTGGTGAAGCTATGGAGGAATAATTC 943
> AT5G40580.1 | Symbols: PBB2 | 20S proteasome beta subunit PBB2
| chr5:16248286-16250756 REVERSE LENGTH=1199
Length=1199
Score = 911 bits (493), Expect = 0.0
Identities = 722/833 (87%), Gaps = 13/833 (2%)
Strand=Plus/Plus
Query 13 AAAATGTCGCAATCAACAGTAGATGTTTCGGCAAAGGGTGGGTTTAGCTTCGACT-TGTG 71
||||||||||| || | || ||| | || |||| ||||||||||||||||| | ||||
Sbjct 147 AAAATGTCGCAGTCTTCCGTCGATATACCGCCAAAAGGTGGGTTTAGCTTCGA-TCTGTG 205
Query 72 TAAGAGAAATGAGATGCTTACACAAG-AGGGTCTTAAAGCTCCGTC-TTTCTTGAAGACC 129
|| || ||||| ||||| |||| || ||||||||||||| ||||| |||| | |||||
Sbjct 206 CAAAAGGAATGATATGCTGACAC-AGAAGGGTCTTAAAGCGCCGTCGTTTC-TCAAGACT 263
Query 130 GGAACAACCATTGTCGGTTTGAT-TTTCAAGGATGGTGTGATACTAGGGGCAGATACCCG 188
||||| || || || || ||||| ||| ||||||||||| ||||| ||||| ||||| ||
Sbjct 264 GGAACGACTATCGTTGGATTGATATTT-AAGGATGGTGTAATACTTGGGGCTGATACACG 322
Query 189 AGCGACCGAGGGGCCCATTGTTGCTGATAAAAACTGTGAAAAGATTCACTATATGGCACC 248
|| || || ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct 323 GGCAACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACTACATGGCACC 382
Query 249 AAACATATATTGTTGTGGTGCAGGAACCGCGGCTGACACTGAAGCAGTTACTGATATGGT 308
|||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 383 AAACATTTACTGTTGTGGTGCAGGAACCGCTGCTGACACTGAAGCAGTAACTGATATGGT 442
Query 309 CAGCTCACAGCTGCGATTGCATCGTTACGAGACTGGTCGTGACTCTCGGGTTATTACTGC 368
||||||||||||||| |||||| | ||| ||||||| || || ||||| || |||||||
Sbjct 443 CAGCTCACAGCTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAGTCGTTACTGC 502
Query 369 TTTAACTCTCCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCTGCTGCGCTTGT 428
|| || || ||||||||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct 503 ATTGACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGCCATGTCTCAGCTGCTCTTGT 562
Query 429 GCTTGGTGGAGTTGATATCACTGGCCCACATCTGCATACTCTATACCCAAACGGTT-TAA 487
|||||||||||||||||| || || || ||||| || || |||||||| |||||| | |
Sbjct 563 GCTTGGTGGAGTTGATATTACCGGGCCTCATCTTCACACGATATACCCACACGGTTCT-A 621
Query 488 CTGAAACTCTTCCATTTGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTGTGTTTG 547
|||| ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 622 CTGACACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGTCAGTGTTTG 681
Query 548 AGGCGAAGTACAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGTTGGTCGCTGAAGCCA 607
| || ||||| |||||||| |||||||| ||||||||||| |||||||| ||||||||||
Sbjct 682 AAGCAAAGTATAAAGAAGGTCTAACTAGAGATGAAGGAATCAAGTTGGTTGCTGAAGCCA 741
Query 608 TATGCTCTGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTAGACATCTGCGTGATCA 667
||||||||||||||||||| ||||| |||||||||||||| || || ||||| |||||||
Sbjct 742 TATGCTCTGGTATATTCAACGACCTTGGTAGTGGTAGCAATGTGGATATCTGTGTGATCA 801
Query 668 CAAAGGGGAACAAGGAATACCTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTCA 727
| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 802 CTAAGGGGCACAAGGAATACTTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTTA 861
Query 728 GCAGCAAAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCACCCCAT 787
|||||||||||||||| ||||||||||||||||||||||| || |||||||| || ||||
Sbjct 862 GCAGCAAAGGCTATTCATTCACCAAGAAAACCGAGGTTCTACTCACCAAAATTACACCAT 921
Query 788 TGCTGGAGCGAGTCGAAATTACAGAAGT--C-GGTGAAGCTATGGAGGAATGA 837
| ||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 922 TATTGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAATGA 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42548322509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5