BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475777
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66810.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 1088 0.0
> AT1G66810.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:24927613-24928803 REVERSE LENGTH=1006
Length=1006
Score = 1088 bits (589), Expect = 0.0
Identities = 866/989 (88%), Gaps = 61/989 (6%)
Strand=Plus/Plus
Query 1 ATGGAGAAACTCGCTTCGTCTACAATAACAGATCTAGCTTGCGTAACAGCAATAAACTCA 60
|||||||||||||| ||||||| | |||||||||||||||||||| || |||||||||
Sbjct 74 ATGGAGAAACTCGCGGCGTCTACTGTTACAGATCTAGCTTGCGTAACGGCGATAAACTCA 133
Query 61 CCACCACCTCCATTATCACCTCTCTCTGAAAAAAGCTTCAACAACAAACATCAAGAAGAG 120
| || |||||| ||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 134 TCGCCGCCTCCACTATCACCGATCTCTGAACAAAGCTTCAACAACAAACACCAAGAAGAG 193
Query 121 TTCGCCGCAAGCTTCGCATCACTCTACAATTCAATTTTCTCACCGGAATCTCAATTCCCG 180
||||||||||||||||||||||||||||| |||| ||| |||| | |||
Sbjct 194 TTCGCCGCAAGCTTCGCATCACTCTACAACTCAA---TCT--------TCTC-A---CCG 238
Query 181 ATTTCGTTAtctctctctccttctcctccgtcctcttcctcACCGCCAGCTCGCTTCGAT 240
| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 239 -----G-AATCTCTCTCTCCTTCTCCTCCGTCCTCTTCCTCACCACCATCTCGCGTCGAT 292
Query 241 ACAACAACAGAGCATCGTCTTCGTCAAGCGAGACTTATCCTCGAGTACGATGAACTCAAC 300
||||| |||||||||||||||| |||||||| |||||||||||||||||| |||||||||
Sbjct 293 ACAACTACAGAGCATCGTCTTCTTCAAGCGAAACTTATCCTCGAGTACGACGAACTCAAC 352
Query 301 GAGCATTACGAGCTTTGCCTTAACCGTCTTCAATCTCTAATGACGGAACTCGACTCTCTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 353 GAGCATTACGAGCTTTGCCTTAACCGTCTTCAATCTCTAATGACGGAACTTGACTCTCTT 412
Query 361 CGTCACGAAAACGATTCTCTCCGCTTTGAAAACTCAGATCTACTCAAACTTATTCATCTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 413 CGTCACGAAAACGATTCTCTCCGCTTTGAAAACTCAGATCTACTCAAACTTATTCGTATC 472
Query 421 TCTACTTCATCTTCTTCCTCCTCCTCCTCCGTCTCTCCACCGCCGATCCATAACCATAAC 480
||||||||| |||||||||||||||||||| ||| || || | |||||||
Sbjct 473 TCTACTTCA---------TCCTCCTCCTCCGTCTCTCCTCCGGCG--CC-GATCCATAAC 520
Query 481 CGCCAATTCCGTCACCAGATCTCCGATT-TCGGTCCGATTCATAAGCATTCTCGCTCCGT 539
|| ||||||||||||||||||||||||| ||| |||| | ||| | | | |
Sbjct 521 CGTCAATTCCGTCACCAGATCTCCGATTCTCGCTCCG---C-GAAG-AGAAACAAT-CAA 574
Query 540 GAAGAGAAACTCGTTGCCTAAGAGCATCTCCGTCAGATCTCCAGGTTATCTCAAGATCAA 599
| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 575 G-AGAGAAACTCGTTGCCTAAGAGCATCTCCGTCAGATCTCAAGGATATCTCAAGATCAA 633
Query 600 CCATGGATTTGGAGTTTCTGATCGT-CAAACGAGTCAACTCAGCTTCACGAGTCAACACA 658
||||||||||| || || |||| | |||||||||||||||||| | | | ||| |
Sbjct 634 CCATGGATTTGAAGCGTCAGATC-TCCAAACGAGTCAACTCAGC-T--C---T-AACTC- 684
Query 659 GCTCCGACTCGGTGTCGTCTCAAAAGGTGTGTGTAGTACCAACAAAAGGAGAGAGAGAAG 718
| | | || | || |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 685 GGT--G--TC--T-TCTTCTCAAAAGGTGTGTGTAGTACAAACAAAAGGGGAGAGAGAAG 737
Query 719 CATTAGAGCTTGAGGTATATCGTCAAGGGATGATGAAGACGGAGCTTTGTAACAAATGGC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CATTAGAGCTTGAGGTATATCGTCAAGGGATGATGAAGACGGAGCTTTGTAACAAATGGC 797
Query 779 AAGAGACTGGAGCTTGTCCTTACGGCGATAATTGCCAATTCGCTCACGGAATCGGCGAGC 838
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 798 AAGAGACTGGAGCTTGTTGTTACGGCGATAATTGCCAATTCGCTCACGGAATCGACGAGC 857
Query 839 TCCGTCCTGTGATTAGGCATCCACGGTACAAAACTGAGGTTTGTAGAATGATTGTCACCG 898
| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 858 TACGTCCTGTGATTAGGCATCCACGCTACAAAACTGAGGTTTGCAGAATGATGGTCACCG 917
Query 899 GAGCTATGTGTCCTTACGGTCACCGTTGCCATTTCCGTCACTCACTTACTGATCAAGAGA 958
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GAGCTATGTGTCCGTACGGTCACCGTTGCCATTTCCGTCACTCACTTACTGATCAAGAGA 977
Query 959 GGATGATGATGATGCT-C--ACTCGCTGA 984
|||||||||||||| | | |||||||||
Sbjct 978 GGATGATGATGATGATGCTTACTCGCTGA 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5