BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475779
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66830.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3097 0.0
> AT1G66830.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:24930665-24932918 REVERSE LENGTH=2177
Length=2177
Score = 3097 bits (1677), Expect = 0.0
Identities = 1990/2141 (93%), Gaps = 22/2141 (1%)
Strand=Plus/Plus
Query 1 TTTTTTGGAGATCTTTAGAAGCCAAACTTTACTCAATTCAGAATTGTGTTTCTCTTTAGA 60
||| |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 24 TTTCTTGGAGATATTTAGGAGCCAAACTTTACTCAATTCAGAATTGTGTCTCTCTTTAGA 83
Query 61 GATGGCTCAATTATTTCTCATTCTCTCCTTAATTCTAACTCAtttttttGCCATGGCTAC 120
|||| |||| |||||||||||||||| ||| |||||||||||||| |||||||| || ||
Sbjct 84 GATGTCTCAGTTATTTCTCATTCTCTGCTTCATTCTAACTCATTTCTTTGCCATAGCCAC 143
Query 121 TTCTTTAAACGATCAAGGTCTTGCTCTTCTTTCCTTTAAGCAATCCTTACAAAACCAGAG 180
|||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct 144 TTCTCTAAACGATCAAGGTCTTGCTCTTCTTTCCTTTAAACAATCCATACAAAACC--AG 201
Query 181 TAGTGACTCTGTTTTTACCAATTGGAACTCTTCAGATTCAAACCCTTGTT-TATGGCAAG 239
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 202 -AGTGACTCTGTTTTTACCAATTGGAACTCTTCAGATTCAAACCCTTGTTCT-TGGCAAG 259
Query 240 GTGTTACATGTAATGATGAGCTGAGAGTTGTTTCGATTCGTCTTCCTAATACACGGCTTT 299
|||||||||||||| |||| |||||||||| ||||||||||||||||||| ||| ||||
Sbjct 260 GTGTTACATGTAATTATGATATGAGAGTTGTCTCGATTCGTCTTCCTAATAAACGTCTTT 319
Query 300 CGGGTTTTCTTCATCCATCCATTGGAAGTCTCTTGTCGCTTCGTCATGTTAACCTTAGAG 359
|||||| |||| ||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 320 CGGGTTCTCTTGATCCATCCATTGGAAGTCTCTTGTCCCTTCGTCACATTAACCTAAGAG 379
Query 360 ACAATGAGTTTCAAGGGGAGTTACCTGTGGAACTATATGGACTTAAAGGGCTTCAAAGCT 419
||||||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 380 ACAATGACTTTCAAGGGAAGTTACCTGTGGAACTCTTTGGACTTAAAGGGCTTCAAAGCT 439
Query 420 TGGGGCTGTCCGGGAATTCTTTTTCCGGGTTGGTTCCTGAGGAGATTGGGAGGTTGAAGA 479
||| ||| || || ||||||||||||||||| || || || |||||||| || |||||||
Sbjct 440 TGGTGCTTTCTGGAAATTCTTTTTCCGGGTTTGTCCCAGAAGAGATTGGTAGCTTGAAGA 499
Query 480 GTCTGATGACTTTGGATCTTTCGGAGAATTCTTTCAACGGTTCGATCCCTTTGTCGCTTA 539
|||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 500 GTCTAATGACTCTGGATCTTTCGGAGAATTCTTTCAACGGTTCGATTTCTTTGTCGCTTA 559
Query 540 TTCAATGCAAGAAGCTGAAAACACTTGTTCTTAGCAAGAACAGTTTCTCTGGAGCTCTTC 599
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 560 TTCCATGCAAGAAGCTGAAAACGCTTGTTCTTAGCAAGAACAGTTTCTCTGGAGATCTTC 619
Query 600 CAACCGGGTTTGGTTCTAACTTGGTTCATCTTCGGACGCTGAATCTTTCTTTCAATCGAT 659
|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 620 CAACAGGGTTAGGTTCTAACTTGGTTCATCTTCGGACACTGAATCTTTCTTTCAATCGCT 679
Query 660 TAACTGGAACGATCCCCGAAGATATCGGAAATCTGAAGAATCTGAAAGGTACTCTTGATC 719
| ||||||||||||||||||||| | |||| |||| |||||||||||||||| |||||||
Sbjct 680 TGACTGGAACGATCCCCGAAGATGTAGGAAGTCTGGAGAATCTGAAAGGTACACTTGATC 739
Query 720 TTTCTCATAACGTCTTCTCAGGTATGATTCCAACAAGTCTTGGAAATCTCCCGGAGCTAC 779
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 740 TTTCTCATAACTTCTTCTCAGGTATGATTCCAACAAGTCTTGGAAATCTCCCTGAGCTTC 799
Query 780 TGTATGTCGATCTTTCTTACAATAATCTCAGTGGTCCGATACCAAAATCCAACGTTTTGT 839
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 800 TCTATGTCGATCTTTCTTACAATAATCTCAGTGGTCCGATACCAAAATTCAACGTTCTGT 859
Query 840 TGAATGCCGGTCCAAATGCTTTCCAAGGGAACCCTTTCCTTTGCGGATTACCGATAAAAG 899
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 860 TGAATGCCGGTCCAAATGCTTTCCAAGGGAACCCTTTCCTCTGTGGATTACCGAT-AAAG 918
Query 900 -TTTCTTGCACCACAAGAAACACACAGGTAGTTCCTTCTCAACTATATACAAGAAGAGCC 958
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 919 ATTTCTTGCAGCACAAGAAACACACAAGTAGTTCCTTCTCAACTATATACAAGAAGAGCC 978
Query 959 AACCATCATTCTAGACTCTGCATCATCCTTACAGCCACTGGAGGCACAGTGGCCGGAATC 1018
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 979 AACCATCATTCTAGACTCTGCATCATCCTTACAGCCACTGGAGGCACAGTCGCCGGAATC 1038
Query 1019 ATTTTTCTTGCTTTGTTATTCATCTACTATCTTCGGAAAGCATCAGCTCGTGCAATCAAA 1078
||||||||||||| ||||||||||||||||| || |||||||| |||||||||| ||||
Sbjct 1039 ATTTTTCTTGCTTCATTATTCATCTACTATCTCCGAAAAGCATCGGCTCGTGCAAACAAA 1098
Query 1079 GATGAGAACAACC--ACA---C--A-GAA-GAGATACTGAA-AA-A-GACAAAGCCAGGG 1126
||| | ||||||| ||| | | || |||| |||||| || | ||||||||||| |
Sbjct 1099 GATCAAAACAACCGAACATGTCATATAAACGAGAAACTGAAGAAGACGACAAAGCCAGAG 1158
Query 1127 TTTTTATGTTTCAAGACTGGGAATTCAGAATCTGAAGCGCT--A-GAGAACAAAAATCAA 1183
||| | |||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 1159 TTTCTCTGTTTCAAGACTGGGAATTCAGAATCTGAAACGCTAGATGAGAACAAAAATCAA 1218
Query 1184 CAAGTTTTCATGCCAATGGACCCGGAAATCGAATTTGACCTAGACCAGCTTCTAAAAGCC 1243
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1219 CAAGTTTTCATGCCAATGGACCCGGAAATCGAATTTGACCTCGACCAGCTTCTAAAAGCC 1278
Query 1244 TCGGCTTTTCTTCTAGGGAAGAGCAGGATCGGGCTTGTGTACAAGGTTGTTCTTGAAAAC 1303
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1279 TCGGCTTTTCTTCTAGGGAAGAGCAGGATCGGGCTTGTGTACAAGGTAGTTCTTGAAAAT 1338
Query 1304 GGGTTAATGTTAGCCGTTAGACGATTAGAAGATAAAGGTTGGCTAAGGCTCAAAGAGTTT 1363
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1339 GGATTAATGTTAGCCGTTAGACGATTAGAAGATAAAGGTTGGCTACGGCTCAAAGAGTTT 1398
Query 1364 CTAGCTGATGTCGAAGCAATGGCGAAAATCAAGCACCCGAATGTCTTGAATCTCAAGGCT 1423
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1399 CTAGCTGATGTCGAAGCAATGGCGAAAATCAAGCACCCTAATGTCTTGAATCTCAAGGCT 1458
Query 1424 TGTTGCTGGTCTCCGGAAGAGAAACTCCTAATCTATGATTACATACCAAATGGTGACCTT 1483
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1459 TGTTGCTGGTCTCCTGAAGAGAAACTCCTGATTTATGATTACATACCAAATGGTGACCTT 1518
Query 1484 GGTTCTGCAATTCAAGGTAGACCTGGTAGCGTCTCCTGCAAGCAACTAACTTGGCCGGTC 1543
|||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||||
Sbjct 1519 GGTTCTGCAATTCAAGGTAGACCTGGTAGCGTGTCATGCAAGCAACTAACCTGGACGGTC 1578
Query 1544 CGGTTAAGAATATTGAGAGGAATCGCAAAAGGATTGACTTACATTCACGAGTTCAGTCCC 1603
||||||| ||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct 1579 CGGTTAAAAATATTGAGAGGAATAGCAAAAGGATTAACTTATATTCATGAGTTTAGTCCC 1638
Query 1604 AAAAGATACGTCCATGGACATATAAACTCAAGCAACATACTTCTCGGACCGAATCTTGAA 1663
||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1639 AAAAGGTATGTCCATGGACATATAAACACAAGCAACATACTTCTAGGACCGAATCTTGAA 1698
Query 1664 CCGAAAGTATCCGGTTTCGGTCTAGGTCGTATCGTCGACACATCTTCAGAGATCAGATCA 1723
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1699 CCGAAAGTATCCGGTTTCGGTCTAGGTCGTATCGTCGACACGTCTTCAGATATCAGATCA 1758
Query 1724 GACCAGATCTCCCCCATGGAGACAAGCTCACCAATCATCTCTAGAGAATCATATTACCAA 1783
||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1759 GACCAAATCTCTCCCATGGAGACAAGCTCACCAATCCTCTCTAGAGAATCATATTACCAA 1818
Query 1784 GCTCCTGAAGCAGCTTCAAAGATGACTAAACCGTCTCAGAAATGGGATGTGTATTCATTC 1843
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1819 GCTCCTGAAGCAGCTTCAAAAATGACTAAACCGTCTCAGAAATGGGATGTGTATTCATTC 1878
Query 1844 GGTTTAGTGATACTCGAATTGGTAACCGGAAAATCTCCGGTTAATTCAGAGATGGATTTG 1903
|||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||
Sbjct 1879 GGTTTAGTGATACTCGAAATGGTAACCGGAAAATCTCCGGTTAGTTCAGAAATGGATTTG 1938
Query 1904 GTTATGTGGGTTCAATCTGCTAGTGAGAGAAATAAACCGGTTTGGTATGTTCTTGATCCG 1963
|||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1939 GTTATGTGGGTTGAATCGGCTAGTGAGAGAAATAAACCGGCTTGGTATGTTCTTGATCCG 1998
Query 1964 GTTTTAGCTCGAGATAGAGATTTGGAAGATAGTATGGTTCAAGTTATCAAGATCGGTTTA 2023
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1999 GTTTTAGCTCGTGATAGAGATTTGGAAGATAGTATGGTTCAAGTCATCAAGATCGGTTTA 2058
Query 2024 GCTTGTGTGCAGAAGAATCCAGATAAAAGACCACTCATGAGAAATGTCTACGAGAGCTTC 2083
||||||||||||||||| |||||||||||||||| |||||||| ||| | |||||||||
Sbjct 2059 GCTTGTGTGCAGAAGAACCCAGATAAAAGACCACACATGAGAAGTGTATTGGAGAGCTTC 2118
Query 2084 GAGAAATTGGTTTCTTCCATTTAATTATTTTTAATTAATGA 2124
||||||||||| |||| ||||||||||| |||||||||||
Sbjct 2119 GAGAAATTGGTAACTTCTATTTAATTATTATTAATTAATGA 2159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105320743410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5