BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475781

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G66850.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   667    0.0  


> AT1G66850.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr1:24936958-24937434 
FORWARD LENGTH=477
Length=477

 Score =  667 bits (361),  Expect = 0.0
 Identities = 439/475 (92%), Gaps = 11/475 (2%)
 Strand=Plus/Plus

Query  1    AATATAAAAAACAACCAAATTCCGGACATGAAGATCGTGACATTGGTACTCGTCGTCTTC  60
            |||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AATATAGAATATAACCATATTCCGGACATGAAGATCGTGACATTGGTACTCGTCGTCTTC  60

Query  61   GTCATACTTTCGATATCATTCCCGGCTGCCATCGTCAAAGCCGCAGACACGGGAGATACA  120
            ||||||||||||| |||||||||||||||||   ||||||||| ||||||||||||||||
Sbjct  61   GTCATACTTTCGACATCATTCCCGGCTGCCA---TCAAAGCCGAAGACACGGGAGATACA  117

Query  121  GGAAATGTGGGAGTGACATGTGACGCAAGGCAGCTTCAGCCTTGCCTTGCCGCGATTACG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  GGAAATGTGGGAGTGACATGTGACGCAAGGCAGCTTCAGCCTTGCCTTGCCGCGATTACG  177

Query  181  GGAGGAGGACAGCCTTCGGGTGCATGTTGTGCTAAGCTTACAGAGCAACAGTCATGCCTT  240
            ||||||||||| || || |||||||||||||| |||||||||||||||||||||||||| 
Sbjct  178  GGAGGAGGACAACCCTCAGGTGCATGTTGTGCAAAGCTTACAGAGCAACAGTCATGCCTC  237

Query  241  TGTGGTTTCGCTAAGAACCCTGCGTTTGCACAGTACATTAGCTCTCCAAACGCTCGCAAA  300
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  238  TGTGGTTTCGCTAAGAACCCTGCGTTCGCACAGTACATTAGCTCTCCAAACGCTCGCAAA  297

Query  301  GTCCTCGTTACTTGTGGTGTTGCTTATCCTACTTGTTGAAA-TATACACTACTAGAGATT  359
            || ||| || ||||   |||||||||||| ||||||||||| | ||   | |||||||||
Sbjct  298  GTGCTCCTTGCTTGCAATGTTGCTTATCCCACTTGTTGAAACT-TA---T-CTAGAGATT  352

Query  360  TTATAAATAAATAATTGAAATGAAATAAATTACATTATATCAAACGTTTTATGAAACAGT  419
            ||||||||||||||  |||| |||||||||||||||||||||||||||  |||| ||| |
Sbjct  353  TTATAAATAAATAAACGAAAGGAAATAAATTACATTATATCAAACGTT--ATGATACAAT  410

Query  420  TTAACCGTTTGTGTTAATGTACTGGCTTACATGGTTAAATAAAGTTTATTTTCTT  474
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  411  TCAACCGTTTGTGTTAATGTACTGGCTTACATGGTTAAATAAAGTTTATTTTCTT  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5