BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475782
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66860.1 | Symbols: | Class I glutamine amidotransferase-li... 2150 0.0
AT5G38200.1 | Symbols: | Class I glutamine amidotransferase-li... 902 0.0
AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superf... 217 3e-55
AT1G66880.1 | Symbols: | Protein kinase superfamily protein | ... 135 9e-31
> AT1G66860.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr1:24942188-24944497 FORWARD LENGTH=1499
Length=1499
Score = 2150 bits (1164), Expect = 0.0
Identities = 1341/1424 (94%), Gaps = 21/1424 (1%)
Strand=Plus/Plus
Query 1 AACCCACACAATATCTTGTGTCTTAGTTCCTACACAACATAGAAGATGGGAAATCCTAGC 60
||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 11 AACTCACACTTTATCTTGTGTCTTAGTTCCT--AC-ACATAGAAGATGGGAAATCCTAGC 67
Query 61 GTGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTTGTCGTCTCTAGACGCACTCTTCGC 120
|||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct 68 GTGAATGATCTCTCTCAAGTCCTCCCTCGCGTCCTTGTTGTCTCTAGACGCACTCTTCGC 127
Query 121 AAGAACAAATTCGTCGATTTCGTTGGTGAGTACCATCTTGATCTTATAGTCGAGAATGGT 180
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 128 AAGAACAAATTTGTTGATTTCGTTGGTGAGTACCATCTTGATCTTATAGTCGAGAACGGT 187
Query 181 GCTGTACCGGTAATTGTACCACGAGTGGCTGGTGTTCACAAGTTGCTAGAGAGCTTCAAG 240
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 188 GCTGTACCGGTGATTGTCCCACGAGTGGCTGGTGTTCACAAGTTACTAGAGAGCTTCAAG 247
Query 241 CCCATCCATGGAGTTCTCCTTTGTGAAGGAGAAGACATCGACCCTTCTCTATACGAGTCT 300
||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 248 CCCATCCATGGAGTTCTACTCTGTGAAGGAGAAGACATCGACCCTTCTCTTTACGAGTCC 307
Query 301 GAAATATCTTCCCTTTCACTTCAAGAACTCGACAAGATTCGGAAAACACATGCAAGTGAT 360
|||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct 308 GAAATATCGTCCCTTTCACCTCAAGAACTCGACGAGATTCGGAAAACACACGCAAGTGAT 367
Query 361 ACAGCTATCGACAAGGAAAAAGACTCTATTGAGTTTGCCCTCGCAAAGCTCTGCCTAGAA 420
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 368 ACAGCTATCGACAAAGAAAAAGACTCTATTGAGTTTGCCCTCGCAAAGCTCTGCCTTGAA 427
Query 421 CAGAACATTCCTTACTTGGGGATTTGTAGAGGTTCACAGGTTTTGAATGTTGCTTGTGGT 480
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 CAAAACATTCCTTACTTAGGGATTTGTAGAGGTTCACAGGTTTTGAATGTTGCTTGTGGT 487
Query 481 GGAAGTCTTTATCAAGACTTGGAGAAAGAGGTCACGATCAATGTTCCTGAGGAACATAGA 540
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
Sbjct 488 GGAAGTCTTTATCAAGACTTGGAGAAAGAGGTCACGATCAAGGTTCCCGAGGAACATAAA 547
Query 541 AGAAATCATATAGATTATGATGACTATGATGGTTATAGACATGAGGTGAAGATAGTAAAA 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 AGAAACCATATAGATTATGATGACTATGATGGTTATAGACATGAGGTGAAGATAGTAAAA 607
Query 601 AACAGCCCTTTGCATAAATGGTTCAAAGATTCTTTAGATGAAGACAAGATGGAGATCTTG 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 608 AACAGCCCTTTGCATAAATGGTTCAAAGATTCTTTAGATGAAGAAAAGATGGAGATCTTG 667
Query 661 GTCAATAGTTATCACCACCAAGGGGTTAAAAGATTGGCGCAAAGATTCGTGCCAATGGCT 720
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 668 GTCAACAGTTATCACCACCAAGGGGTTAAGAGATTGGCGCAAAGATTTGTGCCAATGGCT 727
Query 721 TTTGCTCCTGATGGATTGATCGAAGGGTTTTATGATCCCGATATGTACAATCCTGAAGAG 780
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 728 TTTGCTCCTGATGGATTGATTGAAGGGTTTTATGATCCTGATATGTACAATCCTGAAGAG 787
Query 781 GGAAAGTTCCTAATGGGTTTACAGTTTCATCCAGAGAGAATGAGAAAGAATGGTAGCGAT 840
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 788 GGAAAGTTCCTAATGGGTTTACAGTTTCATCCAGAGAGAATGAGGAAGAATGGTAGCGAT 847
Query 841 GAATTTGATTTCCCTGGTTGTCCTGTTGCTTATCAGGAATTTGCAAAAGCAGTGATTGCT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GAATTTGATTTCCCTGGTTGTCCTGTTGCTTATCAGGAATTTGCAAAAGCAGTGATTGCA 907
Query 901 TGTCAAAAGAAG-----------CTTGT-T---CCTAAGAAATTAGAACTCAATCCAGAA 945
|||||||||||| ||||| | ||||||||||| |||||||||||||||
Sbjct 908 TGTCAAAAGAAGGTGAATAGTTTCTTGTCTGTTCCTAAGAAATTGGAACTCAATCCAGAA 967
Query 946 ATGGAGaaaaaaaGAAAGATACTTGTCAGGAGCTTCTCGCTTGCGAGGTCTATGTACACA 1005
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 ATGGAGAACAAAAGAAAGATACTTGTCAGGAGCTTCTCGCTTGCGAGGTCTATGTACACC 1027
Query 1006 AGATCTTATTCGTTGAATAACCAATCCAGAGAATCAGAACTTGACGTTGGAGCTGAGTTT 1065
|||||| |||||||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1028 AGATCTCATTCGTTGAAGAACCAATCCACAGAATCAGAACTTGAAGTTGGAGCTGAGTTT 1087
Query 1066 CTTGAGTCAAATACCGCTCTAAGTGTACAGCAAGAGATGAGGCTAAAGGAGATGGGAGCG 1125
||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 1088 CTTGAGTCAAATACCGCTCTAAGTGTACAACAAGAGATGAGGTTAAAAGAGATGGGAGCG 1147
Query 1126 ACGATGAGGAACGGTGGATCATTTACGGAAAAGCTTAGAATTCATGAAGAGAAGCAGAGG 1185
|| |||||||| |||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1148 ACTATGAGGAATGGTGGATCATTTACGGAAAAGCTTAGGCTTGATGAAAAGAAGCAGAGG 1207
Query 1186 AAGGCTATGAACATAATGAAGAACATGAACGTTGAGCGACTCTCTGAGCTCATGGCTTTC 1245
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1208 AAGGCTATGAACATAATGAAGAACATGAACATTGAGCGACTCTCTGAGCTCATGGCTTTC 1267
Query 1246 TACCACTTGATGGGGAAGATCTCTAGTGAGGTGTTGGAGAGAAAGCTACGTGCCTCAGTC 1305
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1268 TACCACTTGATGGGGAAGATCTCTAGTGAGGTGTTGGAGAGAAAGCTTCATGCTTCAGTC 1327
Query 1306 AATGACCTCAATCTCACTTCTCAATGACGTCTCAAAATGATGATGATGAATGTTTAAATT 1365
| |||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 1328 AGTGACCTCAATCTAACTCCTCAATGACGTCTCAAA-TAATGATGATGAATGTTTAAATT 1386
Query 1366 TGGCTTTTCAAAt-ttttt-tGTGTGTTTAAAGTTACTTTGTGC 1407
||||||||||| | ||||| ||||||||| ||||||||||||||
Sbjct 1387 TGGCTTTTCAATTGTTTTTGTGTGTGTTTTAAGTTACTTTGTGC 1430
> AT5G38200.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr5:15256276-15258755 FORWARD LENGTH=1699
Length=1699
Score = 902 bits (488), Expect = 0.0
Identities = 1019/1269 (80%), Gaps = 61/1269 (5%)
Strand=Plus/Plus
Query 62 TGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTTGTCGTCTCTAGACGCACTC-TTCGC 120
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||
Sbjct 136 TGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTCGTCGTATCTAGACGCAC-CGTTCGT 194
Query 121 AAGAACAAATTCGTCGATTTCGTTGGTGAGTACCATCTTGATCTT-ATAGT-CGAGAATG 178
|| |||||||||||||||||||||||||| |||||||||||| || ||||| || | |
Sbjct 195 AAAAACAAATTCGTCGATTTCGTTGGTGAATACCATCTTGAT-TTGATAGTACGTTAC-G 252
Query 179 G-TGCTGTACCGGTAATTGTACCACGAGTGGCTGGTGTTCACAAGTTGCTAGAGAGCTTC 237
| || |||||| || ||||||||| |||| | |||||||||| |||||| ||||| ||
Sbjct 253 GATG-TGTACCAGTGATTGTACCAAGAGTAACGGGTGTTCACATGTTGCTTGAGAGTTTT 311
Query 238 AAGCCCATCCATGGAGTTCTCCTTTGTGAAGGAGAAGACATCGACCCTTCTCTATACGAG 297
|| || || ||||||||| | ||||||||||||||||| || || |||||||| || ||
Sbjct 312 AAACCAATACATGGAGTTTTACTTTGTGAAGGAGAAGATATTGATCCTTCTCTTTATGAA 371
Query 298 TCTGAAATATCTTCCCTTTCACTTCAAGAACT-CGACAAGATTCG-GAAAACACATGCAA 355
|||||||||||||| ||||| | | |||| || | | | |||| | |||| ||||||| |
Sbjct 372 TCTGAAATATCTTCTCTTTCTCCTGAAGAGCTTCAAGA-GATTAGAGAAA-CACATGCTA 429
Query 356 GTGATACAGCTATCGACAAGGAAAAAGACTCTATTGAGTTTGCCCTCGCAAAGCTCTGCC 415
||||||||||||| || || || ||||| ||||||||||| | || || ||||| || |
Sbjct 430 GTGATACAGCTATTGATAAAGAGAAAGATTCTATTGAGTTAGGTCTTGCTAAGCTTTGTC 489
Query 416 TAGAACAGAACATTCCTTACTTGGGGATTTGTAGAGGTTCACAGGTTTTGAATGTTGCTT 475
| |||||||||||||||||||| || || |||||||| ||||| |||||||||||||||
Sbjct 490 TTGAACAGAACATTCCTTACTTAGGAATCTGTAGAGGATCACAAATTTTGAATGTTGCTT 549
Query 476 GTGGTGGAAGTCTTTATCAAGACTTGGAGAAAGAGGTCACGA-TCAATGTT-CCTGAGGA 533
||||||| | |||||||| ||| || ||||||||| | |||| | || ||| || || ||
Sbjct 550 GTGGTGGGACTCTTTATCTAGATTTAGAGAAAGAGCTAACGAAT-AA-GTTACCAGAAGA 607
Query 534 AC-ATAGAA-GAAATCATATAGATTATGATGACTATGATGGTTATAGACATGAGGTGAAG 591
|| | |||| || ||||| ||||||||| | ||||||||| ||||||||| |||| |
Sbjct 608 ACGA-AGAACGATG-CATATCGATTATGATAATTATGATGGTCATAGACATGTTGTGAGG 665
Query 592 ATAGTAAAAAACAG-CC-CTTTGCATAAATGGTTCAAAGATTCTTTAGATGAAGACAAGA 649
|| || | ||||| || ||| ||| ||||| |||||||| ||||||| || || |
Sbjct 666 ATTGTTGAGAACAGTCCACTT--CATTCCTGGTTTAAAGATTCATTAGATGGTGAAAATA 723
Query 650 TGGAGATCTTGGTCAATAGTTATCACCACCAAGGGGTTAAAAGATTGGCGCAAAGATTCG 709
||||||| ||||| |||||||||||||| ||||| || || ||| |||| |||||||| |
Sbjct 724 TGGAGATTTTGGTTAATAGTTATCACCATCAAGGTGTGAAGAGACTGGCACAAAGATTTG 783
Query 710 TGCCAATGGCTTTTGCTCCTGATGGATTGATCGAAGGGTTTTATGATCCCGATATGTACA 769
||||||||||||||||| ||||||| || || ||||| ||||| ||||| ||| ||| |
Sbjct 784 TGCCAATGGCTTTTGCTGCTGATGGGTTAATGGAAGGTTTTTACGATCCGGATGCGTATA 843
Query 770 ATCCTGAAGA-GGGAAAGTTCCTAATGGGTTTACAGTTTCATCCAGAGAGAATGAGA-AA 827
|||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 844 ATCCTGAAGAAGGGAA-GTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAGACAA 902
Query 828 GAATGGTAGCGATGAATTTGATT-TCCCTGGTTGTCCTGTTGCTTATCAGGAATTTGCAA 886
| || | ||||| ||||||| ||| ||||||||||| |||||||||||| |||||||
Sbjct 903 CA-TGATCTTGATGAGTTTGATTATCC-TGGTTGTCCTGCTGCTTATCAGGAGTTTGCAA 960
Query 887 AAGCAGTGATTGCTTGTCA-AA-A-G---AA--GCT--T-GT-T---CCTAAGAAATTAG 931
| || |||||||| | || || | | || ||| | || | || |||| ||| |
Sbjct 961 AGGCGGTGATTGCGTACCAGAAGAAGCTGAATAGCTCATTGTCTGTTCCAAAGACATT-G 1019
Query 932 AA-CTCAATCCAGAAATGGAGaaaaaaaGAAAGATACTTGTCAGGAGCTTCTCGCTTGCG 990
|| || || ||||||||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct 1020 AAGCTTGATAGTGAAATGGAGAATAAAAGAAAGATGCTTGTTAGGAGTTTCTCACTTGCT 1079
Query 991 AGGTCTATGTACAC-A-AG-ATCTTATTC-GTTGAATAACCAATCCAGAGAATCAGAACT 1046
| || |||||| | || | | | | | ||| |||| ||| | ||||||||||||
Sbjct 1080 AAGTATATGTATGTTAGAGGAGC--AC-CAGG-GAAGAACCCATCAAAAGAATCAGAACT 1135
Query 1047 TGACGTTGGAGCTGAGTTTCTTGAGTCAAATACCGCTCTAAGTGTACAGCAAGAGATGAG 1106
||| |||||||| ||||| |||||||| || || || ||||| | | |||||||||||||
Sbjct 1136 TGAAGTTGGAGCCGAGTTCCTTGAGTCGAACACGGCGCTAAGCGCAGAGCAAGAGATGAG 1195
Query 1107 GCTAAAGGAGATGGGAGCGACGATGAGGAACGGTGGATCATTTACGGAAAAGCTTAGAAT 1166
||| |||||||||||||||||| |||||||||| ||||||| || | ||||| || |||
Sbjct 1196 GCTGAAGGAGATGGGAGCGACGGTGAGGAACGGAGGATCATATATGAAAAAG-TT-GAAA 1253
Query 1167 -TC-ATGAAGAGAAGCAGAGGAAGGCTATGAACATAATGAAGAACATGAACGTTGAGCGA 1224
| | || || |||||||||| ||| | |||||| ||||| || |||||| | |||| |
Sbjct 1254 GTGGACGAGGATAAGCAGAGGATGGCGAGGAACATGATGAAAAAGATGAACATAGAGCAA 1313
Query 1225 CTCTCTGAGCTCATGGC-TTTCTACCACTTGATGGGGAAGATCTCTAGTGAGGTGTTGGA 1283
||||| ||||| ||||| ||| || || |||||||| || || | | | ||||| |||||
Sbjct 1314 CTCTCAGAGCTTATGGCGTTT-TATCATTTGATGGGTAATATATGTGGAGAGGTTTTGGA 1372
Query 1284 GAGAAAGCT 1292
|||||||
Sbjct 1373 CCGAAAGCT 1381
> AT1G66870.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:24945484-24946968 REVERSE LENGTH=1485
Length=1485
Score = 217 bits (117), Expect = 3e-55
Identities = 153/170 (90%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 1074 AAATACCGCTCTAAGTGTACAGCAAGAGATGAGGCTAAAGGAGATGGGAGCGACGATGAG 1133
|||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 168 AAATACTACTCTAAGTGCACAGCAAGAGATGAGGCTAAAGGAGATGGGAGTAATGATGAG 109
Query 1134 GAACGGTG-GATCATTTACGGAAAAGCTTAGAATTCATGAA-GAGAAGCAGAGGAAGGCT 1191
|||||| | ||||||||||| |||| ||||| || || || |||||| |||||||||||
Sbjct 108 GAACGG-GAGATCATTTACGAAAAACCTTAGGCTTGAT-AAGGAGAAGTAGAGGAAGGCT 51
Query 1192 ATGAACATAATGAAGAACATGAACGTTGAGCGACTCTCTGAGCTCATGGC 1241
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 50 ATGAACATAATGAAGAACATGAACTTTGAGCGACTCTCTGAGCTCATGGC 1
> AT1G66880.1 | Symbols: | Protein kinase superfamily protein
| chr1:24946928-24955611 FORWARD LENGTH=4064
Length=4064
Score = 135 bits (73), Expect = 9e-31
Identities = 80/83 (96%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 1201 ATGAAGAACATGAACGTTGAGCGACTCTCTGAGCTCATGGCTTTCTACCACTTGATGGGG 1260
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAACATGAACTTTGAGCGACTCTCTGAGCTCATGGCTTTCTACCACTTGATGGGG 60
Query 1261 AAGATCTCTAGTGAGGTGTTGGA 1283
||||||||||||||| ||| |||
Sbjct 61 AAGATCTCTAGTGAG-TGTGGGA 82
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71385174990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5