BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475783
Length=481
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66890.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 680 0.0
> AT1G66890.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match
is: 50S ribosomal protein-related (TAIR:AT5G16200.1); Has
36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24957558-24958114
FORWARD LENGTH=557
Length=557
Score = 680 bits (368), Expect = 0.0
Identities = 448/485 (92%), Gaps = 11/485 (2%)
Strand=Plus/Plus
Query 1 AATGTCTCTGCAAAAATTCAAGCTTCTCGCTACTCATTGCAGCACCGTCGCGGAGAGTCC 60
||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 56 AATGTCTCTGCAAAAGTTTAAGCTTCTCGCAACTCATTGCAGCACCGTCGCAGAGAGTCC 115
Query 61 AACGCGTAGTCCAGTCATCCACCTCCGCCGTCGTAAAACGCTGCGTTTGTTACTTACTCG 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 116 GACACGTAGTCCAGTCATCCACCTCCGCCGTCGTAAAACGCTGCGTTTGTTACTCACTCG 175
Query 121 ATCATCAGATCGATGGAGATTACCTGAGATTCAGAAA-AACGTAGATGAATCGAAGAAAT 179
||||||||| |||||||||||||| ||||| || ||| |||||||||||||||||||||
Sbjct 176 ATCATCAGACCGATGGAGATTACCGGAGATCCA-AAACAACGTAGATGAATCGAAGAAAA 234
Query 180 CGGATAAGAGAGATAAGATCCGATCTCGTCGGAAGCTTAGAGAGCTTTTTGTTTCGTCGC 239
|||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||||||
Sbjct 235 CGGATAAGAGAGGTAAGATCCGATCTAGCCGGAAGCTTGGAGATCTTTTTGTTTCGTCGC 294
Query 240 CACCGTTTGAGGAAAGTGGCGGCGGCGGCGGCG-AGA-A-GGCGATGAAGATGGAGGTGG 296
|||||||||||||||||||||| |||||||||| ||| | || || ||||||||||||||
Sbjct 295 CACCGTTTGAGGAAAGTGGCGGTGGCGGCGGCGGAGATAAGGGGACGAAGATGGAGGTGG 354
Query 297 AGGTGGAGATGGAGAGGGATGTACCGGTTAACGGCGTTAATAATAACGGAGGTTTTGGTG 356
|| | |||||||||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct 355 AG----A--TGGAGAGGGATGTACCGGTTAACGGCGTTAGTAATAACGCAGGTTTTGGAG 408
Query 357 AAGAGATAACGGCTCGGCGTGTGGGCTTTAATGGGTCTGTTAGGCCCATGTCGTCTGTTA 416
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 409 AAGAGATAACGGCTCGGCGTGTGGGCTTTAACGGGTCTGTTAGGCCCATGTCATCTGTTA 468
Query 417 CACTTCGATGTAGGTTACTTCGACGATCTTGGCGTCCTGTACTTGTAACTATTCCTGAAC 476
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 469 CACTTCGATGTAGATTACTTAGACGATCTTGGCGTCCTGTACTTGTAACTATTCCTGAAC 528
Query 477 AATAA 481
|||||
Sbjct 529 AATAA 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22906771032
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5