BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475796
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67025.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 859 0.0
> AT1G67025.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Protein kinase superfamily protein (TAIR:AT1G18390.1);
Has 221 Blast hits to 191 proteins in 10 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 221; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25013026-25014725
REVERSE LENGTH=1274
Length=1274
Score = 859 bits (465), Expect = 0.0
Identities = 578/632 (91%), Gaps = 10/632 (2%)
Strand=Plus/Plus
Query 1 ATGAGTGATCAAATCATCAAACTAGAAGGTCCGACGCTGTTGCCAAACGTCACATATCCT 60
|||||||||||||| ||||| ||||||||||||| ||||||||||||||| || ||||||
Sbjct 291 ATGAGTGATCAAATTATCAAGCTAGAAGGTCCGAGGCTGTTGCCAAACGTGACGTATCCT 350
Query 61 TTCTGGGGAGTCAATAAACCCAATTATTGCGGCCAAACAGAATTTCAACTCTCTTGCAAG 120
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 351 TTCTGGGGAGTCAATAAACCCAATTATTGCGGCCAAACAGAGTTTCAACTCACTTGCAAG 410
Query 121 AACAACCAAAACCTAACTTTAGTTCTCACAAACCTCTCTCTTCAAGTAATCTCTTTTGAT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 411 AACAACCAAAACCTAACTTTAGTTCTCACAAACCTTTCTCTTCAAGTAATCTCTTTTGAT 470
Query 181 TTGGAGAATCAAACTTTAACCGTTGCCGATGAGAGTTTGTTCGAGGGTAGATGCCCAAGC 240
||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 471 TTGGAGAATCAAACTTTAACCGTTGTCGATGAGAGTTTATTCGAGGGTCGATGCCCAAGC 530
Query 241 ATATCCCTGAACTTCACCGGGACCAATCAGTTCACAATCGCTCCTACA-TCCAAGAAGAT 299
|| |||||||||||||||||| |||||||||||||||||||||||||| | | ||||||
Sbjct 531 ATGTCCCTGAACTTCACCGGGGCCAATCAGTTCACAATCGCTCCTACAGTGGA-GAAGAT 589
Query 300 TGACCTATTCATTTGTCCTGCTCCTGAGATGGTAAATCCGCTCTCTTCGTTTACTTGCAG 359
|||||||||||||||||||||| || ||||||||| |||||| || |||||||||||||
Sbjct 590 TGACCTATTCATTTGTCCTGCTTCTCAGATGGTAAGTCCGCTTTCGGCGTTTACTTGCAG 649
Query 360 AAAAAGCAACGGGGATATGGTAACATATTACACGTTTAAGACCTCAGATTCTGTTACGGA 419
||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||
Sbjct 650 AAAAAGCAACGGGGAAATTGTAACATATTACGCGTTTAAGCCCTCAGATTCTGTTACGGA 709
Query 420 GTGCGTAAAGTTGGGAGAAGT-TCCAGTTCTTAGTTCTGTTTTGGATGATTTTCAGCGGT 478
||||||||| |||||||| | |||||||||||||||| || ||||||| ||||||||||
Sbjct 710 CTGCGTAAAGATGGGAGAA-TATCCAGTTCTTAGTTCTCTTCTGGATGAGTTTCAGCGGT 768
Query 479 CAAGGCT-AACATT-AGAGGAAGCTTTGGTTAAGGGGTTTGATCTTAGGTACAACATCAG 536
||||||| || ||| | || ||||||||||||||||||||||||| |||| |||||||||
Sbjct 769 CAAGGCTTAA-ATTGAAAG-AAGCTTTGGTTAAGGGGTTTGATCTAAGGTTCAACATCAG 826
Query 537 AGATGGT-AGATCTTGCAGAGGTTGTTTGGATAGTGGTGGAGTCTGCGGTTCCGAGTCAG 595
||| | | | ||||||||||||||||| ||||| |||||| |||||||||||| |||
Sbjct 827 AGACGATCA-ATCTTGCAGAGGTTGTTCAAATAGTCATGGAGTATGCGGTTCCGAGCCAG 885
Query 596 TATCTGGCAGTTTTCACTGTCTCTGTTATGAC 627
|||||||||||||||| |||||||| ||||||
Sbjct 886 TATCTGGCAGTTTTCAGTGTCTCTGCTATGAC 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5