BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475797
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67030.1 | Symbols: ZFP6 | zinc finger protein 6 | chr1:2501... 1253 0.0
AT1G68360.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 141 1e-32
> AT1G67030.1 | Symbols: ZFP6 | zinc finger protein 6 | chr1:25016543-25017512
FORWARD LENGTH=970
Length=970
Score = 1253 bits (678), Expect = 0.0
Identities = 875/963 (91%), Gaps = 42/963 (4%)
Strand=Plus/Plus
Query 1 ATTTTAAGTCTTTAATCTCATCTTTCCATTTTCAAGAAGACTTTTAAATCTGtctctctc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTTAAGTCTCTAATCTCATCTTTCCATTTTCAAGAAGACTTTTAAATCTGTCTCTCTC 60
Query 61 tctctctTTG------TAC-----------A--T-ACATATATGGCGACAGAAACATCTT 100
|||||||||| ||| | | |||||||||||||| ||||||||||
Sbjct 61 TCTCTCTTTGTAAATATACATATATAGATAAGCTCACATATATGGCGACTGAAACATCTT 120
Query 101 CTTTGAAGCTCTTCGGTATAAACCTACTTGAAACGACGTCGGATAC-AAACCGGTCGTCC 159
|||||||||||||||||||||||||||||||||||||||||| | | ||||| ||| ||
Sbjct 121 CTTTGAAGCTCTTCGGTATAAACCTACTTGAAACGACGTCGG-TTCAAAACCAGTCATCG 179
Query 160 GAACCAAGATCCGGACCCGGAACTGGATCCGAGTCACGTAAGTACGAGTGTCAATATTGT 219
||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 180 GAACCAAGACCCGGATCCGGATCAGGATCCGAGTCACGTAAGTACGAGTGTCAATACTGT 239
Query 220 TGTAGAGAGTTTGCGAACTCTCAAGCTCTTGGTGGTCACCAAAACGCTCACAAGAAAGAG 279
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTAGAGAGTTTGCTAACTCTCAAGCTCTTGGTGGTCACCAAAACGCTCACAAGAAAGAG 299
Query 280 CGTCAGCTTCTTAAACGTGCACAGATGTTAGCTACTCGCGGCTTGACACGTCATCATAAT 339
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 300 CGTCAGCTTCTTAAACGTGCACAGATGTTAGCTACTCGTGGTTTGCCACGTCATCATAAT 359
Query 340 TTTCACCCTCATACCAATCCGCTTCTTTCCGCCTTCGCACCGCTGCCTCACCTCCTCTCT 399
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 360 TTTCACCCTCATACCAATCCGCTTCTCTCCGCCTTCGCGCCGCTGCCTCACCTCCTCTCT 419
Query 400 CAGCCGCATCCTCCGCCGCATATGATGCTCTCTCCTTCTTCTTCGAGTTCTAAGTGGCTT 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAGCCGCATCCTCCGCCGCATATGATGCTCTCTCCTTCTTCTTCGAGTTCTAAGTGGCTT 479
Query 460 TACGGTGAACACATGTCGTCACAAAACGCCGTTGGGTACTTTCATGGTGGAAGGGGACTT 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACGGTGAACACATGTCGTCACAAAACGCCGTTGGGTACTTTCATGGTGGAAGGGGACTT 539
Query 520 TATGGAGGTGGTATGGAGTCTATGGCAGAAGGGGTTAAGGCTCACGGTGGTTCTTTGCCG 579
|| |||||||| |||||||||||||| | || || ||| |||| |||||||||||||||
Sbjct 540 TACGGAGGTGGCATGGAGTCTATGGCCGGAGAAGTAAAGACTCATGGTGGTTCTTTGCCG 599
Query 580 GAGATGAGGAGGTTCGCCGGAGAGAGTGATCGGAGTAGCGGAGTCAAGTTAGAGAATGGT 639
||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 600 GAGATGAGGAGGTTCGCCGGAGATAGTGATCGGAGTAGCGGAATTAAGTTAGAGAATGGT 659
Query 640 ATTGGGCTGGACCTCCATTTAAGTATTGGGCCATGAATGATTTTTATTTTGGCCCAGTAA 699
||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 660 ATTGGGCTGGACCTCCATTTAAGCCTTGGGCCATGAATGATTATAATTTTGGCCCAGTAA 719
Query 700 AAATCTGTAAAATACTACTCGGATCTCATTTATCTAGAGTGttttttttttttttCCTTA 759
| ||||||||||||||||| |||| |||||| | |||||| | ||||||| |||||
Sbjct 720 AGATCTGTAAAATACTACTAGGATTTCATTTTTATAGAGTATGTTTTTTT-----CCTTA 774
Query 760 ATTTCAGTTGAAATTAGTGATTAttttt-t-tCTTACTTTACCAAATCTTATATT-CTAT 816
||||| ||||||||| |||| ||||||| | |||||||| ||||||||| ||||| ||||
Sbjct 775 ATTTCGGTTGAAATTGGTGAATATTTTTATCTCTTACTT-ACCAAATCTCATATTTCTAT 833
Query 817 GTATGCGTTTGCTTTCACCTTTTTT----ATAT--T-CTTCTTGTAAAAA-TGCAATGTG 868
|||||||||||||||||| |||||| |||| | ||||||||||||| |||||||||
Sbjct 834 GTATGCGTTTGCTTTCACTTTTTTTTTTTATATAATTCTTCTTGTAAAAAATGCAATGTG 893
Query 869 AATTTTCTTCCCTATCATTCTGTCAA-CTTTGGTTCAATTATTTAGTAATCGAA-AATTA 926
| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct 894 AGTTTTCTTCCCTATCATTCTGTCAAGCTTTGGTTCAATTATTTAGTAATCGAATAAT-A 952
Query 927 TAG 929
|||
Sbjct 953 TAG 955
> AT1G68360.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr1:25621678-25622412 REVERSE LENGTH=735
Length=735
Score = 141 bits (76), Expect = 1e-32
Identities = 100/111 (90%), Gaps = 4/111 (4%)
Strand=Plus/Plus
Query 195 ACGTAAGTACGAGTGTCAATATTGTTGTAGAGAGTTTGCG-AACTCTCAAGCTCTT-GGT 252
||||||||| |||||||| ||||||||||||||||||| | ||||| ||||| ||| |||
Sbjct 210 ACGTAAGTATGAGTGTCAGTATTGTTGTAGAGAGTTTG-GTAACTCACAAGC-CTTAGGT 267
Query 253 GGTCACCAAAACGCTCACAAGAAAGAGCGTCAGCTTCTTAAACGTGCACAG 303
|||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 268 GGTCACCAAAACGCTCACAAGAAAGAGCGTCAACAGCTTAAACGTGCTCAG 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45411668888
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5