BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475798
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67035.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 658 0.0
> AT1G67035.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G38300.1).
| chr1:25018077-25019057 FORWARD LENGTH=981
Length=981
Score = 658 bits (356), Expect = 0.0
Identities = 454/501 (91%), Gaps = 8/501 (2%)
Strand=Plus/Plus
Query 1 GATACAATCTCAAACCCTAGTATGGAATCTCTG-TTTTTCTCCGTTGATTCAATCTCCGA 59
||||||||||||||||||||| ||||||||||| |||||| | ||| || |||| || ||
Sbjct 103 GATACAATCTCAAACCCTAGTTTGGAATCTCTGCTTTTTC-CTGTTAATCCAATGTCAGA 161
Query 60 TACACAACAAAAACTCAAGCTTTTGGTTGATAATGGTGATTACGGATTCGAAAGAGGATC 119
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 162 TACACAACAAAAACTCAAGCTTTTGGTTGATAACGGTGATTACGGATTCGAGAGAGGATC 221
Query 120 TAGATATGGAGAATACGCGAGATTACGAGAATCGAAGCTTCGAATGAAACGAGACTTCGA 179
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 222 TAGATATGGAGAATACGCGAGATTACGAGAATCAAAACTTCGTATGAAACGAGACTTCGA 281
Query 180 GAAGATTCTTAAGGAAGAGGAATTGAGATTTGGTTTTAATAGAGAAGAAGAAATCAGAGT 239
||||||||| |||||||| || |||||||||| || | ||||||||||||||||| ||
Sbjct 282 GAAGATTCTAAAGGAAGAACAAGTGAGATTTGGGTTCACCAGAGAAGAAGAAATCAGGGT 341
Query 240 TTTGCCTGAGAAGAAGACGAGATTCGGATTTATTCAGAATCAGAGGAAAACGTCGTCGTC 299
|||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 342 TTTGCCGGAGAAGAAGACGAGATTCGGATTTAACCCTAATCAGAGGAAAACGTCGTCGTC 401
Query 300 TTCTTCAT-T--G--G-CTCAATCGGTTCCTGATTTCTCTGCTATGATTCGTAAAGAGAA 353
|||||| | | | | ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 402 TTCTTCTTCTTCGTTGGCTCAATCTGTTCCTGATTTCTCTTCTATGATTCGTAAAGAGAA 461
Query 354 TCGTCGACCACCGGTTAATTCGAATTTGATTCCTCGGAGAACAGAACTAACTCCACCGCC 413
|||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 462 TCGTCGACCACCAGTTAATTCGAATTTGCTTCCTCGGAGAACAGAACTTACTCCACCGTC 521
Query 414 GATGAAGAGTAGAAACGCTGCCGTTTTCGCTGGTTCGGTGGCGAGAGGAAGTGTATCAGC 473
|||||||||||||||||| |||||||||||||| || ||| ||||||||||| |||||
Sbjct 522 GATGAAGAGTAGAAACGCCGCCGTTTTCGCTGGATCTGTGATTAGAGGAAGTGTTTCAGC 581
Query 474 GAGTGCTGGTGAGAAGAAAGG 494
|||||||||||||||||||||
Sbjct 582 GAGTGCTGGTGAGAAGAAAGG 602
Score = 202 bits (109), Expect = 4e-51
Identities = 152/171 (89%), Gaps = 9/171 (5%)
Strand=Plus/Plus
Query 492 AGGAGGAAGGAAATCAATT---GGC---GGTGGTGGTCGGACTATTCTAGGTTACAGACA 545
|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 717 AGGAGGAAGGAAATCACTTGGCGGCGGTGGTGGTGGTCGGACTATTCTAGGTTACAGACA 776
Query 546 AATTTACTGATTCTTT-GATCTTGTTTGCCTCTAAAATCTAACATTTGTTGCTCAAAGTT 604
|||||| ||||||||| | ||||||||| || ||| |||||||||||| | ||||||||
Sbjct 777 AATTTATTGATTCTTTTGTTCTTGTTTGTGTCCAAACTCTAACATTTGT-GTTCAAAGTT 835
Query 605 TGtttttttCTGTGTTTAATGGGTTTTTGATTGATAAAGATTAGTCCTTTT 655
||||||||| |||||||||| |||||| |||||||||||||||||||||||
Sbjct 836 TGTTTTTTTGTGTGTTTAATTGGTTTT-GATTGATAAAGATTAGTCCTTTT 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31647512610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5