BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475798 Length=655 Score E Sequences producing significant alignments: (Bits) Value AT1G67035.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 658 0.0 > AT1G67035.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38300.1). | chr1:25018077-25019057 FORWARD LENGTH=981 Length=981 Score = 658 bits (356), Expect = 0.0 Identities = 454/501 (91%), Gaps = 8/501 (2%) Strand=Plus/Plus Query 1 GATACAATCTCAAACCCTAGTATGGAATCTCTG-TTTTTCTCCGTTGATTCAATCTCCGA 59 ||||||||||||||||||||| ||||||||||| |||||| | ||| || |||| || || Sbjct 103 GATACAATCTCAAACCCTAGTTTGGAATCTCTGCTTTTTC-CTGTTAATCCAATGTCAGA 161 Query 60 TACACAACAAAAACTCAAGCTTTTGGTTGATAATGGTGATTACGGATTCGAAAGAGGATC 119 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 162 TACACAACAAAAACTCAAGCTTTTGGTTGATAACGGTGATTACGGATTCGAGAGAGGATC 221 Query 120 TAGATATGGAGAATACGCGAGATTACGAGAATCGAAGCTTCGAATGAAACGAGACTTCGA 179 ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 222 TAGATATGGAGAATACGCGAGATTACGAGAATCAAAACTTCGTATGAAACGAGACTTCGA 281 Query 180 GAAGATTCTTAAGGAAGAGGAATTGAGATTTGGTTTTAATAGAGAAGAAGAAATCAGAGT 239 ||||||||| |||||||| || |||||||||| || | ||||||||||||||||| || Sbjct 282 GAAGATTCTAAAGGAAGAACAAGTGAGATTTGGGTTCACCAGAGAAGAAGAAATCAGGGT 341 Query 240 TTTGCCTGAGAAGAAGACGAGATTCGGATTTATTCAGAATCAGAGGAAAACGTCGTCGTC 299 |||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 342 TTTGCCGGAGAAGAAGACGAGATTCGGATTTAACCCTAATCAGAGGAAAACGTCGTCGTC 401 Query 300 TTCTTCAT-T--G--G-CTCAATCGGTTCCTGATTTCTCTGCTATGATTCGTAAAGAGAA 353 |||||| | | | | ||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 402 TTCTTCTTCTTCGTTGGCTCAATCTGTTCCTGATTTCTCTTCTATGATTCGTAAAGAGAA 461 Query 354 TCGTCGACCACCGGTTAATTCGAATTTGATTCCTCGGAGAACAGAACTAACTCCACCGCC 413 |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| | Sbjct 462 TCGTCGACCACCAGTTAATTCGAATTTGCTTCCTCGGAGAACAGAACTTACTCCACCGTC 521 Query 414 GATGAAGAGTAGAAACGCTGCCGTTTTCGCTGGTTCGGTGGCGAGAGGAAGTGTATCAGC 473 |||||||||||||||||| |||||||||||||| || ||| ||||||||||| ||||| Sbjct 522 GATGAAGAGTAGAAACGCCGCCGTTTTCGCTGGATCTGTGATTAGAGGAAGTGTTTCAGC 581 Query 474 GAGTGCTGGTGAGAAGAAAGG 494 ||||||||||||||||||||| Sbjct 582 GAGTGCTGGTGAGAAGAAAGG 602 Score = 202 bits (109), Expect = 4e-51 Identities = 152/171 (89%), Gaps = 9/171 (5%) Strand=Plus/Plus Query 492 AGGAGGAAGGAAATCAATT---GGC---GGTGGTGGTCGGACTATTCTAGGTTACAGACA 545 |||||||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 717 AGGAGGAAGGAAATCACTTGGCGGCGGTGGTGGTGGTCGGACTATTCTAGGTTACAGACA 776 Query 546 AATTTACTGATTCTTT-GATCTTGTTTGCCTCTAAAATCTAACATTTGTTGCTCAAAGTT 604 |||||| ||||||||| | ||||||||| || ||| |||||||||||| | |||||||| Sbjct 777 AATTTATTGATTCTTTTGTTCTTGTTTGTGTCCAAACTCTAACATTTGT-GTTCAAAGTT 835 Query 605 TGtttttttCTGTGTTTAATGGGTTTTTGATTGATAAAGATTAGTCCTTTT 655 ||||||||| |||||||||| |||||| ||||||||||||||||||||||| Sbjct 836 TGTTTTTTTGTGTGTTTAATTGGTTTT-GATTGATAAAGATTAGTCCTTTT 885 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31647512610 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5