BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475799
Length=2861
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2623 0.0
> AT1G67040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 11 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3);
Has 89 Blast hits to 84 proteins in 15 species:
Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants
- 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:25019105-25022542 REVERSE LENGTH=3101
Length=3101
Score = 2623 bits (1420), Expect = 0.0
Identities = 1990/2250 (88%), Gaps = 100/2250 (4%)
Strand=Plus/Plus
Query 323 TCTTGATGTACATTCATCTCTGAGAGATTCCACAAACTCACAAAAGCTGAGTGACt-ttt 381
||||| ||||||||||||||| ||||||||| |||| |||||||||||||| |||
Sbjct 426 TCTTGTTGTACATTCATCTCTCAGAGATTCCCCAAATTCACAAAAGCTGAG-AACTCAAA 484
Query 382 tcttttttctttt-tttttGCTTCTT-TCTTGATTATGTGATAAAGTTATGGAATTTGAG 439
|||| ||| | || || | ||||||||||||||||||| |||||||||||
Sbjct 485 AAGAGAGAGTTTTGTTTCT-CTGGTTGT-TTGATTATGTGATAAAGTTTTGGAATTTGAG 542
Query 440 ACAATGTGTCTCTAAAGGAGACTTTTTTACTGTGTTTGAGATATCTCTG-AGCTTGT-GG 497
||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| ||
Sbjct 543 GCAATGTGTCTCTAAAGGAGACTTTTTTACAGTGTTTGAGATTTCTCTGAAACTTGTGGG 602
Query 498 GTTTGTTAGGGTTTCGTTATGACGGGAGAGTTACAGGAGACGACGGCGCCGTGTGCGGCT 557
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 603 GTTTGTTAGGGTTTCGTGATGACAGGAGAGTTACAGGAGACGACGGCGCCGTGTGCGGCT 662
Query 558 ATAACTGAGAAACGACCAAATCGACTTGGTGGTTGTGTCGGTGTTTTCTTCCAGCTCTTT 617
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 663 ATAACAGAGAAACGACCAAATCGACTCGGTGGTTGTGTCGGTGTTTTCTTCCAGCTCTTT 722
Query 618 GATTGGAATCGACGTTTTGCTAAAAAGAAACTCTTTTCTCGCAAATCACTTCTTCCTGGA 677
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GATTGGAACCGACGCTTTGCTAAAAAGAAACTCTTTTCTCGCAAATCACTTCTTCCTGGG 782
Query 678 AAACAAGTTTCGAAGAGGTTTGGAGGGAATGAGAAGATGTTAAAGTCAAAGCTTAATCTG 737
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 783 AAACAAGTTTCGAAGAGGTTTGGAGGAAATGAGAAGATGTTAAAGTCTAAGCTTAATCTG 842
Query 738 ATTGATGATGAGAACAGAGGAAGTTTTCCAAAT-AGAGGTGAAG-T-TGGAGAGCTTAAG 794
|||||||||||||||||||||||||| |||||| || ||||| | ||||| | ||||
Sbjct 843 ATTGATGATGAGAACAGAGGAAGTTTCCCAAATCGGA-ATGAAGTTATGGAG-G-TTAAA 899
Query 795 AAGCATGAAATGAGATCTCCTAGTTTAGTAGCACGTTTAATGGGACTTGAATCAATGCCA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAGCATGAAATGAGATCTCCTAGTTTAGTAGCACGTTTAATGGGACTTGAATCAATGCCA 959
Query 855 TCTAGTCATAGAGACAAAGGGAAGAACAAGAAGAAGAAACAGTTGTTTTCGCAGATTCAA 914
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 960 TCTAATCATAGAGACAAAGGGAAGAACAAGAAGAAGAAACCGTTGTTTTCGCAGATTCAA 1019
Query 915 GGTACCGATAAATGTGACTTGTTTGATG-GG--GAAGAAGAAGAAGATAGTGGTTTTGAT 971
| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 1020 GATACCGATAAATGTGACTTGTTTGATGTGGAAGAAGAAGAAGAAGATAGTGGTGTTGAT 1079
Query 972 AAGTTAAGGCCACAGAAGATGCAGAGAACAACGGGAGTTTGTGATAGGCGTGTTGCGGTG 1031
|||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1080 AAGTTAAGACCACAGAAGATGCAGAGAACGACAGGAGTTTGTGATAGGCGTGTTGCGGTT 1139
Query 1032 AAGAAGTTTGGTTCTGATGCGTTGCAGATTAAGAATGTTTTGACTAGAGTAAGGAAACAT 1091
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAGAAGTTTGGTTCTGAAGCGTTGCAGATTAAGAATGTTTTGACTAGAGTAAGGAAACAT 1199
Query 1092 CATCAGTATAATAGTCATCATCAGCATCAGAAACTGGCTTCTCCTGTTAGAAGTCCGAGG 1151
|||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1200 CATCAGTATAAT---CATCA---GCATCAGAAACTAGCTTCTCCTGTTAGAAGTCCGAGG 1253
Query 1152 TTGAATAGAAGAAGTTCTAGGTTGATTGATGCTGCTGCTAGGATTCTTGAACCGGGGAAG 1211
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1254 ATGAATAGAAGAAGTTCTAGGTTGATTGATGCTGCTGCTAGGATTCTTGAGCCGGGGAAG 1313
Query 1212 AGAAATGCGAAATGCGCTATTGCTTATCCAGGTTCTTCGGGGTTTAGAAGGTTTGAAAAT 1271
|||||||||||| |||||||||||||||| |||||| ||||| |||||||||| ||||||
Sbjct 1314 AGAAATGCGAAAGGCGCTATTGCTTATCCTGGTTCTACGGGGATTAGAAGGTTCGAAAAT 1373
Query 1272 GCTGGGAAAGAGCCGGTTGAAGTTGTTTCACCTGAGTTTCAATGTGGTTATAATAATAGT 1331
|||| |||||| ||||||| || | |||| |||||||||||||||||||| ||||||
Sbjct 1374 GCTGCGAAAGAACCGGTTG---TT-T--CACCCGAGTTTCAATGTGGTTATAACAATAGT 1427
Query 1332 GTTGCTTCTTGTAAAGCTTGTGGTAGCTTGGTTGATGTGAATGGTTCGAGTCCGGTAGTT 1391
||||||||||||||| |||||||||| |||||||||||||||||||||| || |||||||
Sbjct 1428 GTTGCTTCTTGTAAATCTTGTGGTAGTTTGGTTGATGTGAATGGTTCGATTCAGGTAGTT 1487
Query 1392 GAAGAAACTGGTAAGAGCGTGGCGTGTGTTTCTGCATCAACGCCTTTTCAACGGAGTAAA 1451
|||| ||||| || | | ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1488 CAAGACACTGGAAACAACATGGCGTGTGTTTCTGAATCAACGCCTTTTCAACGGAGTAAA 1547
Query 1452 AGAAATGTGTTTTGGAGAAATGAAGA--CAGTACAGA-TCAAGT----GGTGAGGAAAGC 1504
|||||||||||||||||||||||||| || | | | || || ||| | || ||
Sbjct 1548 AGAAATGTGTTTTGGAGAAATGAAGATTCA-T-CTGTGTCT-GTTTCTGGTAAAGACAG- 1603
Query 1505 T-CT-A-CACC-G-TGCTCGATATGACT-T-CAATGGGAAGCA-TGGAAAGGATGAAATG 1556
| || | || | || || | | || | || | | || | || ||||||||||
Sbjct 1604 TACTGATCAAATGGTGAA-GAAA-G-CTCTACACCGTGCT-CAATTTAA-GGATGAAATG 1658
Query 1557 TCGCTACCGGGTTTTAGAAACAGA---GATTATCATAATAAGGTGTTGCATAGGGAGGAC 1613
||||| ||||||| |||||||||| || |||||||| |||||||||||||| |||||
Sbjct 1659 TCGCTGCCGGGTTATAGAAACAGATCCGAATATCATAAGAAGGTGTTGCATAGAGAGGAA 1718
Query 1614 AGGTTTCCTCCAGAAGCTCGATCTTTTGCCTTACCAAGTAAAAGAGGTTGTTCTTCACCT 1673
||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1719 AGGTTTCCTCCGGAAGCTCGATCTTTCGCCTTACCGAGTAAAAGAAGTTGTTCTTCACCT 1778
Query 1674 GCAAATGCTATCAACTGTAAAGAGAAGGACTTTATAGCTATGAATAGAGGTTCAACTAGT 1733
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 GCTAATGCTATCAACAGTAAAGAGAAGGACTTTATAGCTATGAATAGAGGTTCAACTAGT 1838
Query 1734 AGGAGTCATCACTCGAAGTCCCCGGTTAAATTTGAAAACTCTGATTTGAATCTGCAGAGA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 AGGAGTCATCACTCGAAGTCCCCGGTTAAATTTGAAAACTCTGATTTGAATCTGCAGAGA 1898
Query 1794 AAATCTCAGACTAGAGTTGAGGAGTCTAGTAGTAGATC-GGTATTAAGCACACCAGGACG 1852
|||||||| |||||||||||||||||| ||| |||||| || |||||| ||||| |||||
Sbjct 1899 AAATCTCATACTAGAGTTGAGGAGTCTTGTAATAGATCAGG-ATTAAGTACACCTGGACG 1957
Query 1853 GAAGAGGAGGCTAGCTTGTGATAGTGGTCACGGACGAGGAATTAGCTT-TACCAGTCCAG 1911
||||||||||||||||||||| |||||||| |||||||||| ||| || || |||||||
Sbjct 1958 GAAGAGGAGGCTAGCTTGTGAAAGTGGTCATGGACGAGGAAGTAG-TTCTATGAGTCCAG 2016
Query 1912 GGTCAAAAAGATTAGATGGTGAATGCTCTTGCGCTTTTAGTAATGGCCCCAGCGGTAGCA 1971
||||| |||||| ||| |||||| |||||| |||| ||| | || |
Sbjct 2017 TGTCAAGAAGATTGGATAGTGAATACTCTTGTGCTT---GTA--G----------TA--A 2059
Query 1972 ATGAAACTGCATTTCCATCACTGAAACTTGGTTCACT-TCACAGAAATAATAGCCAATGC 2030
||||||||||||| ||||||||||||||||||| || | | ||| || |||||||||||
Sbjct 2060 -TGAAACTGCATTTTCATCACTGAAACTTGGTTC-CTCTAATAGACATTATAGCCAATGC 2117
Query 2031 TGTAGAGGAACTAAAGAGAGAAAAGGAGTTCAACGTGTTCCAAGACCTTCCTTTACGAAA 2090
||||||| ||| |||||||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct 2118 TGTAGAGAAACCAAAGAGAGAAGAGGAGTTCAACGCGTTCCCAGACCATCCTTTACGAAA 2177
Query 2091 AGGCCACCGCTTGATGTAGGTACTCTCGGGTTGATTCAGCAAAAGTTGAAAGAATTGGCT 2150
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2178 AGGCCACTGCTTGATGTAGGCACTCTCGGGTTGATTCAGCAAAAGTTGAAAGAATTGGCT 2237
Query 2151 TCTCAGGAAGAAGATGAGGCCAAAGGAGAAAGTGTTTTTCCCAATAAATCAGCCTCTTTG 2210
||||| ||||||||||||||||| |||||||||| ||||||||||||| |||| ||||||
Sbjct 2238 TCTCAAGAAGAAGATGAGGCCAATGGAGAAAGTGGTTTTCCCAATAAACCAGCTTCTTTG 2297
Query 2211 ATTCTCCATGAATTGCTATCTTCTTTAGCTTTGGAGCAGC-G--TTATAATCGAGATATC 2267
||||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||
Sbjct 2298 ATTCTCCATGAATTGCTATCTTCTTTAGCTTTGCAGCAGCAGCCTTATGTTCGAGATATC 2357
Query 2268 GATATGCCTTACGCAGAAACAGCTTATCGGAGGAAAGGCAAAA-ATGAGTTGTGGAGCCC 2326
||||||||||| | | | | | | |||||||||| | ||||| ||||| |
Sbjct 2358 GATATGCCTTAT-C-G-----G---A--G-A--AAAGGCAAAACA-GAGTTTTGGAGTTC 2401
Query 2327 CGTTGGAAATGCAAACAGTGAGTACACTAGCCCGGGTTCTGTACTCGATGCATCTTTCTC 2386
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2402 CATTGGAAATGCAAACAGTGAGTACACTAGCCCGGGATCTGTACTCGATGCATCTTTCTC 2461
Query 2387 CAATGAGAGttttttttCAAATAGCTTTGACAATGTCTCAGGACAAATGAGGCTGCCTCT 2446
||||||||| | ||||| || ||||| |||||| ||||||||||||||||||| |||||
Sbjct 2462 CAATGAGAGCTGCTTTTCGAACAGCTTCGACAATATCTCAGGACAAATGAGGCTACCTCT 2521
Query 2447 AGAGCCTATAGAACCCGACTGGAACATCCTCGAAGATTCCGCGACTTCATTCAAGCATTC 2506
||||||||||||||| || ||| |||| || ||||||| ||||||||||||||| ||||
Sbjct 2522 AGAGCCTATAGAACCAGATTGGGACATTCTTGAAGATTATGCGACTTCATTCAAGAATTC 2581
Query 2507 AACAAGTGGTGGTAATTATCAGGCGATCGC 2536
|||||||| |||||||||||||||||||||
Sbjct 2582 AACAAGTGATGGTAATTATCAGGCGATCGC 2611
Score = 318 bits (172), Expect = 2e-85
Identities = 307/364 (84%), Gaps = 41/364 (11%)
Strand=Plus/Plus
Query 1 GTCTACTTGTATCAGCTACTTAACCTTTTGTGCGCATGCTTCTCTCTTTCTTCTG-TAAC 59
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 28 GTCTACTTGTATCAGCTACTTAACCTTTTGTGCGCATGC-T-TCTCTTTCTTCTGTTAAC 85
Query 60 AATCTCTCTCGAGCTCCTTTCACCGTCAGTGACAAC--AGAG------AG----AA---- 103
|||||||||||||| ||||||||||||||||||||| |||| || ||
Sbjct 86 AATCTCTCTCGAGCCCCTTTCACCGTCAGTGACAACAGAGAGAATCACAGTAATAATTTT 145
Query 104 T-CAC--AGTA-A--T-AATT-TTCAC--ATCATCTCTCTTTCAATCACTTCTCGTCACT 153
| ||| | | | | || ||| | |||||||||||||||||||||||||||||||
Sbjct 146 TACACAAAAAAGATTTCTCTTCTTCTCTTATCATCTCTCTTTCAATCACTTCTCGTCACT 205
Query 154 ATCGTTTTGCTTTTGTCTCCTTTCACTTTTT-AAACTCTCAATTGCGAATATTTACCCGT 212
||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 206 ATCGTTTTGCTTTTGTCTCCTTTCACTTTTTTAAACTCCCAATTGCGAATATT-ACCCGT 264
Query 213 TGAGTTCTCAGTTCTTGACACATAAACTTTTTCCATTCTTCCAAAAAAGCTCTGTTTCTT 272
|||||||||| ||| |||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 265 TGAGTTCTCATTTCGTGACACTTCAACTTTTTCCATTCTTCTTAAAAAGCTCTGTTTCTT 324
Query 273 TCTT-CTT-CT------ACTGTAGT--ACCATTGTCGTTTTCTTGATTTTCCAACTGTCT 322
|||| ||| || ||||| || ||||||||||||||||||||| |||| ||||||
Sbjct 325 TCTTTCTTTCTTCTTCCACTGTTGTGTACCATTGTCGTTTTCTTGATTCTCCACCTGTCT 384
Query 323 TCTT 326
||||
Sbjct 385 TCTT 388
Score = 274 bits (148), Expect = 3e-72
Identities = 243/287 (85%), Gaps = 14/287 (5%)
Strand=Plus/Plus
Query 2539 TCAACCTCCCTGGACTAACCGGCGGGTTCCTCGTAGATGCTATGATCGAACACTTGGAAG 2598
|||| |||||||||||||| || |||||||| |||||||| |||||||||||||||||||
Sbjct 2818 TCAATCTCCCTGGACTAACTGGAGGGTTCCTAGTAGATGCCATGATCGAACACTTGGAAG 2877
Query 2599 -AACGAAACATTTCCTGCGGATTGTTAAAGTCTTTCAGTGCTAAACCTGACGAGTTGATT 2657
||| ||||||||||||||||||||||||| | || | |||||||| |||||| |||||
Sbjct 2878 AAAC-AAACATTTCCTGCGGATTGTTAAAGCCATTGACTGCTAAACAAGACGAGCTGATT 2936
Query 2658 CGAGGTGTTCTTGAAGAAGTTCCAAAGTGGACTCGGATTAACATGGATGAGGTTATCGGT 2717
||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct 2937 CGAGGTGTTATTGAAGAAGTTCCAAAGTGGGCTCGGGTTAATATGGATGAGGTTATCGGT 2996
Query 2718 ATCGAAATGGAGAAATGGCTTGATCCTGAAACTTTTCTATTTGGAATAGGATCAGAGATT 2777
||||||||||| | ||||| | | | ||| | || ||| | || |||||||||
Sbjct 2997 ATCGAAATGGA----T--CTTGAAAC-GCA--TTTG-T-TT-GGAGTTGGTTCAGAGATT 3044
Query 2778 GCATATGAGATCCTTCGGTGTTTGGTTGGCGAGTTAACAACCGATCT 2824
|| |||||||| ||||||||||| | || |||||| ||||||||||
Sbjct 3045 GCTTATGAGATTCTTCGGTGTTTAATCGGAGAGTTAGCAACCGATCT 3091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142173116462
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5