BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475799 Length=2861 Score E Sequences producing significant alignments: (Bits) Value AT1G67040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2623 0.0 > AT1G67040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3); Has 89 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25019105-25022542 REVERSE LENGTH=3101 Length=3101 Score = 2623 bits (1420), Expect = 0.0 Identities = 1990/2250 (88%), Gaps = 100/2250 (4%) Strand=Plus/Plus Query 323 TCTTGATGTACATTCATCTCTGAGAGATTCCACAAACTCACAAAAGCTGAGTGACt-ttt 381 ||||| ||||||||||||||| ||||||||| |||| |||||||||||||| ||| Sbjct 426 TCTTGTTGTACATTCATCTCTCAGAGATTCCCCAAATTCACAAAAGCTGAG-AACTCAAA 484 Query 382 tcttttttctttt-tttttGCTTCTT-TCTTGATTATGTGATAAAGTTATGGAATTTGAG 439 |||| ||| | || || | ||||||||||||||||||| ||||||||||| Sbjct 485 AAGAGAGAGTTTTGTTTCT-CTGGTTGT-TTGATTATGTGATAAAGTTTTGGAATTTGAG 542 Query 440 ACAATGTGTCTCTAAAGGAGACTTTTTTACTGTGTTTGAGATATCTCTG-AGCTTGT-GG 497 ||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| || Sbjct 543 GCAATGTGTCTCTAAAGGAGACTTTTTTACAGTGTTTGAGATTTCTCTGAAACTTGTGGG 602 Query 498 GTTTGTTAGGGTTTCGTTATGACGGGAGAGTTACAGGAGACGACGGCGCCGTGTGCGGCT 557 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 603 GTTTGTTAGGGTTTCGTGATGACAGGAGAGTTACAGGAGACGACGGCGCCGTGTGCGGCT 662 Query 558 ATAACTGAGAAACGACCAAATCGACTTGGTGGTTGTGTCGGTGTTTTCTTCCAGCTCTTT 617 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 663 ATAACAGAGAAACGACCAAATCGACTCGGTGGTTGTGTCGGTGTTTTCTTCCAGCTCTTT 722 Query 618 GATTGGAATCGACGTTTTGCTAAAAAGAAACTCTTTTCTCGCAAATCACTTCTTCCTGGA 677 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 GATTGGAACCGACGCTTTGCTAAAAAGAAACTCTTTTCTCGCAAATCACTTCTTCCTGGG 782 Query 678 AAACAAGTTTCGAAGAGGTTTGGAGGGAATGAGAAGATGTTAAAGTCAAAGCTTAATCTG 737 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 783 AAACAAGTTTCGAAGAGGTTTGGAGGAAATGAGAAGATGTTAAAGTCTAAGCTTAATCTG 842 Query 738 ATTGATGATGAGAACAGAGGAAGTTTTCCAAAT-AGAGGTGAAG-T-TGGAGAGCTTAAG 794 |||||||||||||||||||||||||| |||||| || ||||| | ||||| | |||| Sbjct 843 ATTGATGATGAGAACAGAGGAAGTTTCCCAAATCGGA-ATGAAGTTATGGAG-G-TTAAA 899 Query 795 AAGCATGAAATGAGATCTCCTAGTTTAGTAGCACGTTTAATGGGACTTGAATCAATGCCA 854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AAGCATGAAATGAGATCTCCTAGTTTAGTAGCACGTTTAATGGGACTTGAATCAATGCCA 959 Query 855 TCTAGTCATAGAGACAAAGGGAAGAACAAGAAGAAGAAACAGTTGTTTTCGCAGATTCAA 914 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 960 TCTAATCATAGAGACAAAGGGAAGAACAAGAAGAAGAAACCGTTGTTTTCGCAGATTCAA 1019 Query 915 GGTACCGATAAATGTGACTTGTTTGATG-GG--GAAGAAGAAGAAGATAGTGGTTTTGAT 971 | |||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| Sbjct 1020 GATACCGATAAATGTGACTTGTTTGATGTGGAAGAAGAAGAAGAAGATAGTGGTGTTGAT 1079 Query 972 AAGTTAAGGCCACAGAAGATGCAGAGAACAACGGGAGTTTGTGATAGGCGTGTTGCGGTG 1031 |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1080 AAGTTAAGACCACAGAAGATGCAGAGAACGACAGGAGTTTGTGATAGGCGTGTTGCGGTT 1139 Query 1032 AAGAAGTTTGGTTCTGATGCGTTGCAGATTAAGAATGTTTTGACTAGAGTAAGGAAACAT 1091 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 AAGAAGTTTGGTTCTGAAGCGTTGCAGATTAAGAATGTTTTGACTAGAGTAAGGAAACAT 1199 Query 1092 CATCAGTATAATAGTCATCATCAGCATCAGAAACTGGCTTCTCCTGTTAGAAGTCCGAGG 1151 |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| Sbjct 1200 CATCAGTATAAT---CATCA---GCATCAGAAACTAGCTTCTCCTGTTAGAAGTCCGAGG 1253 Query 1152 TTGAATAGAAGAAGTTCTAGGTTGATTGATGCTGCTGCTAGGATTCTTGAACCGGGGAAG 1211 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1254 ATGAATAGAAGAAGTTCTAGGTTGATTGATGCTGCTGCTAGGATTCTTGAGCCGGGGAAG 1313 Query 1212 AGAAATGCGAAATGCGCTATTGCTTATCCAGGTTCTTCGGGGTTTAGAAGGTTTGAAAAT 1271 |||||||||||| |||||||||||||||| |||||| ||||| |||||||||| |||||| Sbjct 1314 AGAAATGCGAAAGGCGCTATTGCTTATCCTGGTTCTACGGGGATTAGAAGGTTCGAAAAT 1373 Query 1272 GCTGGGAAAGAGCCGGTTGAAGTTGTTTCACCTGAGTTTCAATGTGGTTATAATAATAGT 1331 |||| |||||| ||||||| || | |||| |||||||||||||||||||| |||||| Sbjct 1374 GCTGCGAAAGAACCGGTTG---TT-T--CACCCGAGTTTCAATGTGGTTATAACAATAGT 1427 Query 1332 GTTGCTTCTTGTAAAGCTTGTGGTAGCTTGGTTGATGTGAATGGTTCGAGTCCGGTAGTT 1391 ||||||||||||||| |||||||||| |||||||||||||||||||||| || ||||||| Sbjct 1428 GTTGCTTCTTGTAAATCTTGTGGTAGTTTGGTTGATGTGAATGGTTCGATTCAGGTAGTT 1487 Query 1392 GAAGAAACTGGTAAGAGCGTGGCGTGTGTTTCTGCATCAACGCCTTTTCAACGGAGTAAA 1451 |||| ||||| || | | ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1488 CAAGACACTGGAAACAACATGGCGTGTGTTTCTGAATCAACGCCTTTTCAACGGAGTAAA 1547 Query 1452 AGAAATGTGTTTTGGAGAAATGAAGA--CAGTACAGA-TCAAGT----GGTGAGGAAAGC 1504 |||||||||||||||||||||||||| || | | | || || ||| | || || Sbjct 1548 AGAAATGTGTTTTGGAGAAATGAAGATTCA-T-CTGTGTCT-GTTTCTGGTAAAGACAG- 1603 Query 1505 T-CT-A-CACC-G-TGCTCGATATGACT-T-CAATGGGAAGCA-TGGAAAGGATGAAATG 1556 | || | || | || || | | || | || | | || | || |||||||||| Sbjct 1604 TACTGATCAAATGGTGAA-GAAA-G-CTCTACACCGTGCT-CAATTTAA-GGATGAAATG 1658 Query 1557 TCGCTACCGGGTTTTAGAAACAGA---GATTATCATAATAAGGTGTTGCATAGGGAGGAC 1613 ||||| ||||||| |||||||||| || |||||||| |||||||||||||| ||||| Sbjct 1659 TCGCTGCCGGGTTATAGAAACAGATCCGAATATCATAAGAAGGTGTTGCATAGAGAGGAA 1718 Query 1614 AGGTTTCCTCCAGAAGCTCGATCTTTTGCCTTACCAAGTAAAAGAGGTTGTTCTTCACCT 1673 ||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||| Sbjct 1719 AGGTTTCCTCCGGAAGCTCGATCTTTCGCCTTACCGAGTAAAAGAAGTTGTTCTTCACCT 1778 Query 1674 GCAAATGCTATCAACTGTAAAGAGAAGGACTTTATAGCTATGAATAGAGGTTCAACTAGT 1733 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1779 GCTAATGCTATCAACAGTAAAGAGAAGGACTTTATAGCTATGAATAGAGGTTCAACTAGT 1838 Query 1734 AGGAGTCATCACTCGAAGTCCCCGGTTAAATTTGAAAACTCTGATTTGAATCTGCAGAGA 1793 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1839 AGGAGTCATCACTCGAAGTCCCCGGTTAAATTTGAAAACTCTGATTTGAATCTGCAGAGA 1898 Query 1794 AAATCTCAGACTAGAGTTGAGGAGTCTAGTAGTAGATC-GGTATTAAGCACACCAGGACG 1852 |||||||| |||||||||||||||||| ||| |||||| || |||||| ||||| ||||| Sbjct 1899 AAATCTCATACTAGAGTTGAGGAGTCTTGTAATAGATCAGG-ATTAAGTACACCTGGACG 1957 Query 1853 GAAGAGGAGGCTAGCTTGTGATAGTGGTCACGGACGAGGAATTAGCTT-TACCAGTCCAG 1911 ||||||||||||||||||||| |||||||| |||||||||| ||| || || ||||||| Sbjct 1958 GAAGAGGAGGCTAGCTTGTGAAAGTGGTCATGGACGAGGAAGTAG-TTCTATGAGTCCAG 2016 Query 1912 GGTCAAAAAGATTAGATGGTGAATGCTCTTGCGCTTTTAGTAATGGCCCCAGCGGTAGCA 1971 ||||| |||||| ||| |||||| |||||| |||| ||| | || | Sbjct 2017 TGTCAAGAAGATTGGATAGTGAATACTCTTGTGCTT---GTA--G----------TA--A 2059 Query 1972 ATGAAACTGCATTTCCATCACTGAAACTTGGTTCACT-TCACAGAAATAATAGCCAATGC 2030 ||||||||||||| ||||||||||||||||||| || | | ||| || ||||||||||| Sbjct 2060 -TGAAACTGCATTTTCATCACTGAAACTTGGTTC-CTCTAATAGACATTATAGCCAATGC 2117 Query 2031 TGTAGAGGAACTAAAGAGAGAAAAGGAGTTCAACGTGTTCCAAGACCTTCCTTTACGAAA 2090 ||||||| ||| |||||||||| |||||||||||| ||||| ||||| |||||||||||| Sbjct 2118 TGTAGAGAAACCAAAGAGAGAAGAGGAGTTCAACGCGTTCCCAGACCATCCTTTACGAAA 2177 Query 2091 AGGCCACCGCTTGATGTAGGTACTCTCGGGTTGATTCAGCAAAAGTTGAAAGAATTGGCT 2150 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2178 AGGCCACTGCTTGATGTAGGCACTCTCGGGTTGATTCAGCAAAAGTTGAAAGAATTGGCT 2237 Query 2151 TCTCAGGAAGAAGATGAGGCCAAAGGAGAAAGTGTTTTTCCCAATAAATCAGCCTCTTTG 2210 ||||| ||||||||||||||||| |||||||||| ||||||||||||| |||| |||||| Sbjct 2238 TCTCAAGAAGAAGATGAGGCCAATGGAGAAAGTGGTTTTCCCAATAAACCAGCTTCTTTG 2297 Query 2211 ATTCTCCATGAATTGCTATCTTCTTTAGCTTTGGAGCAGC-G--TTATAATCGAGATATC 2267 ||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||| Sbjct 2298 ATTCTCCATGAATTGCTATCTTCTTTAGCTTTGCAGCAGCAGCCTTATGTTCGAGATATC 2357 Query 2268 GATATGCCTTACGCAGAAACAGCTTATCGGAGGAAAGGCAAAA-ATGAGTTGTGGAGCCC 2326 ||||||||||| | | | | | | |||||||||| | ||||| ||||| | Sbjct 2358 GATATGCCTTAT-C-G-----G---A--G-A--AAAGGCAAAACA-GAGTTTTGGAGTTC 2401 Query 2327 CGTTGGAAATGCAAACAGTGAGTACACTAGCCCGGGTTCTGTACTCGATGCATCTTTCTC 2386 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2402 CATTGGAAATGCAAACAGTGAGTACACTAGCCCGGGATCTGTACTCGATGCATCTTTCTC 2461 Query 2387 CAATGAGAGttttttttCAAATAGCTTTGACAATGTCTCAGGACAAATGAGGCTGCCTCT 2446 ||||||||| | ||||| || ||||| |||||| ||||||||||||||||||| ||||| Sbjct 2462 CAATGAGAGCTGCTTTTCGAACAGCTTCGACAATATCTCAGGACAAATGAGGCTACCTCT 2521 Query 2447 AGAGCCTATAGAACCCGACTGGAACATCCTCGAAGATTCCGCGACTTCATTCAAGCATTC 2506 ||||||||||||||| || ||| |||| || ||||||| ||||||||||||||| |||| Sbjct 2522 AGAGCCTATAGAACCAGATTGGGACATTCTTGAAGATTATGCGACTTCATTCAAGAATTC 2581 Query 2507 AACAAGTGGTGGTAATTATCAGGCGATCGC 2536 |||||||| ||||||||||||||||||||| Sbjct 2582 AACAAGTGATGGTAATTATCAGGCGATCGC 2611 Score = 318 bits (172), Expect = 2e-85 Identities = 307/364 (84%), Gaps = 41/364 (11%) Strand=Plus/Plus Query 1 GTCTACTTGTATCAGCTACTTAACCTTTTGTGCGCATGCTTCTCTCTTTCTTCTG-TAAC 59 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| Sbjct 28 GTCTACTTGTATCAGCTACTTAACCTTTTGTGCGCATGC-T-TCTCTTTCTTCTGTTAAC 85 Query 60 AATCTCTCTCGAGCTCCTTTCACCGTCAGTGACAAC--AGAG------AG----AA---- 103 |||||||||||||| ||||||||||||||||||||| |||| || || Sbjct 86 AATCTCTCTCGAGCCCCTTTCACCGTCAGTGACAACAGAGAGAATCACAGTAATAATTTT 145 Query 104 T-CAC--AGTA-A--T-AATT-TTCAC--ATCATCTCTCTTTCAATCACTTCTCGTCACT 153 | ||| | | | | || ||| | ||||||||||||||||||||||||||||||| Sbjct 146 TACACAAAAAAGATTTCTCTTCTTCTCTTATCATCTCTCTTTCAATCACTTCTCGTCACT 205 Query 154 ATCGTTTTGCTTTTGTCTCCTTTCACTTTTT-AAACTCTCAATTGCGAATATTTACCCGT 212 ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| Sbjct 206 ATCGTTTTGCTTTTGTCTCCTTTCACTTTTTTAAACTCCCAATTGCGAATATT-ACCCGT 264 Query 213 TGAGTTCTCAGTTCTTGACACATAAACTTTTTCCATTCTTCCAAAAAAGCTCTGTTTCTT 272 |||||||||| ||| |||||| | ||||||||||||||||| ||||||||||||||||| Sbjct 265 TGAGTTCTCATTTCGTGACACTTCAACTTTTTCCATTCTTCTTAAAAAGCTCTGTTTCTT 324 Query 273 TCTT-CTT-CT------ACTGTAGT--ACCATTGTCGTTTTCTTGATTTTCCAACTGTCT 322 |||| ||| || ||||| || ||||||||||||||||||||| |||| |||||| Sbjct 325 TCTTTCTTTCTTCTTCCACTGTTGTGTACCATTGTCGTTTTCTTGATTCTCCACCTGTCT 384 Query 323 TCTT 326 |||| Sbjct 385 TCTT 388 Score = 274 bits (148), Expect = 3e-72 Identities = 243/287 (85%), Gaps = 14/287 (5%) Strand=Plus/Plus Query 2539 TCAACCTCCCTGGACTAACCGGCGGGTTCCTCGTAGATGCTATGATCGAACACTTGGAAG 2598 |||| |||||||||||||| || |||||||| |||||||| ||||||||||||||||||| Sbjct 2818 TCAATCTCCCTGGACTAACTGGAGGGTTCCTAGTAGATGCCATGATCGAACACTTGGAAG 2877 Query 2599 -AACGAAACATTTCCTGCGGATTGTTAAAGTCTTTCAGTGCTAAACCTGACGAGTTGATT 2657 ||| ||||||||||||||||||||||||| | || | |||||||| |||||| ||||| Sbjct 2878 AAAC-AAACATTTCCTGCGGATTGTTAAAGCCATTGACTGCTAAACAAGACGAGCTGATT 2936 Query 2658 CGAGGTGTTCTTGAAGAAGTTCCAAAGTGGACTCGGATTAACATGGATGAGGTTATCGGT 2717 ||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||| Sbjct 2937 CGAGGTGTTATTGAAGAAGTTCCAAAGTGGGCTCGGGTTAATATGGATGAGGTTATCGGT 2996 Query 2718 ATCGAAATGGAGAAATGGCTTGATCCTGAAACTTTTCTATTTGGAATAGGATCAGAGATT 2777 ||||||||||| | ||||| | | | ||| | || ||| | || ||||||||| Sbjct 2997 ATCGAAATGGA----T--CTTGAAAC-GCA--TTTG-T-TT-GGAGTTGGTTCAGAGATT 3044 Query 2778 GCATATGAGATCCTTCGGTGTTTGGTTGGCGAGTTAACAACCGATCT 2824 || |||||||| ||||||||||| | || |||||| |||||||||| Sbjct 3045 GCTTATGAGATTCTTCGGTGTTTAATCGGAGAGTTAGCAACCGATCT 3091 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 142173116462 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5