BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475800
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67050.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1639 0.0
> AT1G67050.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G38320.1);
Has 617 Blast hits to 318 proteins in 80 species: Archae -
0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128;
Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). |
chr1:25028627-25029788 REVERSE LENGTH=1162
Length=1162
Score = 1639 bits (887), Expect = 0.0
Identities = 1055/1128 (94%), Gaps = 44/1128 (4%)
Strand=Plus/Plus
Query 1 tctctctttctctcttcttcgaaattctccttctcctctttttctcCAGAAACTaaaaaa 60
|||||||||||||||||||||||||||| | ||||||||||||| |||||||| |
Sbjct 6 TCTCTCTTTCTCTCTTCTTCGAAATTCT--TCCTCCTCTTTTTCTGCAGAAACT--ATCC 61
Query 61 aaaaaTCTCTTCGTTTTCATAAATTCTCATTTACTATATATaaaaaaaaaCCTTTCAAAT 120
||||||||||||||||||| || |||||| | ||| || ||||||||| |||| ||||
Sbjct 62 AAAAATCTCTTCGTTTTCACAATTTCTCA--T--TAT-TA-AAAAAAAAA-CTTT-AAAT 113
Query 121 TCGTCTTCTTCAAG--AAAATGGCGGTGGATCTTTTATCGGAAAATTCTAATATGAGTCC 178
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TCTTCTTCTTCAAGAAAAAATGGCGGTGGATCTTTTATCGGAAAATTCTAATATGAGTCC 173
Query 179 AAGAATCTCATTTTCGCGTGACTTTTGTCAATCAGACGCAATACCAATCGAGAAACGTCC 238
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 AAGAATCTCATTTTCACGTGACTTTTGTCAATCAGACGCAATACCAATCGAGAAACGTCC 233
Query 239 CTTAAGATCATCAAATTCTAAACCATCAAGCCTCAATTCAAGCATTGATTTCGATTTCTG 298
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 234 CTTAAGATCATCAAACTCGAAACCATCAAGCCTCAATTCAAGCATAGATTTCGATTTCTG 293
Query 299 CATTCCCGGCGGCGTAAATTCCGGCGAAAGCTTCGACCAAGGTTCTTGGTCCGCCGATGA 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 294 CATTCCCGGCGGCGTAAATTCCGGCGAAAGCTTCGATCAAGGTTCTTGGTCCGCCGATGA 353
Query 359 ACTCTTCTCTAACGGCAAAATCTTACCAACGGAAATCAAGAAAAAACCAGAACCGGGaaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 354 ACTCTTCTCTAACGGCAAAATCTTACCAACGGAAATCAAGAAAAAACCAGAACCGGGTAA 413
Query 419 aaaaGAACCCGAATCGAAAGATACAAAACCGGTTAAGA-CTAAACCGGATTCAAGAAAAC 477
||||||| || | | | | ||||||||||||| | |||||||||||||||||||||
Sbjct 414 AAAAGAA-CC--A--G--A-A-CCAAAACCGGTTAA-ATCTAAACCGGATTCAAGAAAAC 463
Query 478 AGAGGAAAC-A--AAACGAAGAACAACAAGAAGACGACGTGATAATCACGACGGAGGAGA 534
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 AGAGGAAACAACCAAACGAAGAACAACAAGAAGACGACGTGATAATCACGACGGAGGAGA 523
Query 535 AAACCAATACGAAGTCGTTTTGGGGGTTTAAGAGAAGCAGTAGTTTAAACTGTGGAAGTA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AAACCAATACGAAGTCGTTTTGGGGGTTTAAGAGAAGCAGTAGTTTAAACTGTGGAAGTA 583
Query 595 CTTATGGTCGGAGTTTATGTCCGTTACCGTTACTAAACCGGAGTAATTCAACCGGTTCAA 654
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 584 CTTATGGACGGAGTTTATGTCCGTTACCATTACTAAACCGGAGTAATTCAACCGGTTCAA 643
Query 655 CGTCGAGTAAACAAAAACAGAGCAGCTCAAGGAAACACAACGAACATGTGAAGTTACAAC 714
||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 644 CGTCGAGTAAACAGAAACAGAGCAGCTCAAGGAAACATAACGAGCATGTTAAGTTACAAC 703
Query 715 AATCTTCATCGTTGTCTTCTTCTTCCTCTGCTTCGTCTTCTTTGAGTAATAATGGTTTTT 774
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 704 AATCTTCATCGTTGTCTTCTTCTTCTTCTGCTTCGTCTTCTTTGAGTAATAATGGTTTTT 763
Query 775 CGAAACCGCCATTGAAGAAAAGCTATGGAGGGTATAGTTATGGTAGTCATGGAGGTGGTG 834
||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 764 CGAAACCACCATTGAAGAAAAGCTATGGAGGTTATAGTTATGGTAGCCATGGTGGTGGTG 823
Query 835 GGATTAGAGTGAGTCCGGTTATAAACGTTGTTCCTTCAGGGAATTTGTTTGGTTTTGGTT 894
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 824 GGATTAGAGTGAGTCCGGTTATAAACGTTGTTCCTTCTGGGAATTTGTTTGGTTTTGGTT 883
Query 895 CCATGTTTTCTGGTAATGGAAGAGACAAGAACAAGAAGAGATAAAA----TGTAAGAATA 950
| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 884 CAATGTTTTCTGGTAATGGAAGAGACAAGAACAAGAAAAGATAAAAAAAATGTAAGAATA 943
Query 951 GATATGTTTTCTGGTTTTACTGTTTTAttcttct--t-----cttcttcttgttctctGA 1003
||||||||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 944 GATATGTTT-CTGGTTTTACTGTTTTATTCTTCTGATTTGTTCTTCTTCTTGTTCTCTGA 1002
Query 1004 AACTCTGAAGATTTTCTGACAGTGTGTTTTGTGGATCCCATGCCAGtattattatttttt 1063
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1003 A-CTCTGAAGATTTTCTGACAGTGTGTTTTGTGGATCCCATGCCAGTATTATT-TTTT-- 1058
Query 1064 agactattgtggtgtaattgtgttttgtttgatttgttagtttgtgtt 1111
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 AGACTATTGTGGTGTAATTGTGTTTTGTTTGATTTGTTAGTTTGTGTT 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56124209310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5