BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475801
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1219 0.0
> AT1G67060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 283 Blast hits
to 281 proteins in 136 species: Archae - 0; Bacteria - 145;
Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other
Eukaryotes - 32 (source: NCBI BLink). | chr1:25036616-25039389
FORWARD LENGTH=1084
Length=1084
Score = 1219 bits (660), Expect = 0.0
Identities = 793/853 (93%), Gaps = 26/853 (3%)
Strand=Plus/Plus
Query 42 AGAGAGAAAGAAAGATTCAATCTTTATTAGCCGGAGATGATGAATTCACCGAACTGGGAA 101
||| ||||||||||||||||||||||||||||||||||| | |||| || |||||||||
Sbjct 78 AGAAAGAAAGAAAGATTCAATCTTTATTAGCCGGAGATG--G-ATTCGCCAAACTGGGAA 134
Query 102 CTCCGGGGTTGTTGTAACCGGAATCAAAATACTTTCCTTATCACCATCGGAATCTTCACC 161
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 135 CTCCGTGGTTGTTGTAACCGGAATCAAAATACTTTCCTCATCACCATCGGAGTCTTCACC 194
Query 162 GTCGTTATCCTTCTGCTATGGAGGACATTTCTATTGACTCCATTTAAACTCATTACGGTG 221
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GTAGTTATCCTTCTGCTATGGAGGACATTTCTATTGACTCCATTTAAACTCATTACGGTG 254
Query 222 TTTTTACATGAAGCCAGTCATGCCGTTGCTTGCAAGCTTACATGTGGAGATGTAGAGGGG 281
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TTTTTGCACGAAGCTAGTCATGCCGTTGCTTGCAAGCTTACATGTGGAGATGTAGAGGGG 314
Query 282 ATGGAGGTGAATGCAAATGAAGGGGGTTCGACAACAACACGTGGTGGCATTTATTGGCTG 341
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 315 ATGGAGGTGAATGCAAATGAAGGGGGTTCGACCACAACACGTGGTGGCATTTATTGGTTG 374
Query 342 ATCTTACCTGCTGGCTATCTTGGCTCATCATTTTGGGGAATGGCATTGATTCTTGCATCT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 ATCTTACCTGCTGGCTATCTTGGCTCATCATTTTGGGGAATGGCATTGATTCTTGCATCT 434
Query 402 ACCAATCTGCTGACAGCAAGAATAGCTGCTGCTGGTCTGGGTCTTGCTTTATTCATCGT- 460
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 435 ACCAATCTGCTTACAGCAAGAATAGCTGCTGCTGGTCTTGGTCTTGCTTTATTCATCGTT 494
Query 461 CTTATTCATTGCCAAAAATTGGACGCTTCGAGGTCTTTGTATAGGTTTCATAGTTTTCCT 520
|| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 495 CTC-TTCATTGCCAAAAACTGGACGCTTCGAGGGCTTTGTATAGGTTTCATAGTTTTCCT 553
Query 521 CGCTATCATCTGGGTTCTACAAGAGTTAACTACAGTCAAAATTCTCCGTTATGTCATTCT 580
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 CGCTGTCATATGGGTTCTACAAGAGTTAACTACAGTCAAAATTCTCCGTTATGTCATTCT 613
Query 581 GTTCATTGGTGTGATGAATAGCTTATTCTCAGTTTACGATATCTATGATGATTTGATATC 640
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GTTTATTGGTGTGATGAATAGCTTATTCTCAGTTTACGATATCTATGATGATTTGATATC 673
Query 641 TCGGAGGGTCCATTCAAGCGACGCTGAGAAGTTTGCAGAGATCTGTCCTTGCTGTACCGG 700
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 674 TCGGAGGGTCCATTCGAGCGATGCTGAGAAGTTCGCAGAGATCTGTCCTTGCTGTACCGG 733
Query 701 TTGTGGCTGGGGTGTCATTTGGGGAATGATTTCATTTGCGTTTCTTTGCGCGTCGCTCTA 760
|||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||
Sbjct 734 TTGTGGCTGGGGTGTCATCTGGGGAATGATATCATTTGCGTTTCTTTGTGCATCGCTCTA 793
Query 761 TCTCGGCCTAGTGATCCTATCATAAAAGGGTATTCTTGTATGAATTTGTTGGTGTCTCTC 820
|||||| |||||||||||||||||| ||||||||||| | | || |||
Sbjct 794 TCTCGGGCTAGTGATCCTATCATAAGAGGGTATTCTT-T--G--TTA--------CTC-- 838
Query 821 AGGTTCAAATTCTTCCCAGTGAAATGCA-G-A--GACAA-TAGTTTGATAAAA-GCTTGA 874
||||||| |||||||||||||||||||| | | ||||| |||||||| |||| | ||||
Sbjct 839 AGGTTCAGATTCTTCCCAGTGAAATGCATGCAAAGACAAATAGTTTGACAAAAAGATTGA 898
Query 875 TTCTTTAAATCCC 887
||||||| |||||
Sbjct 899 TTCTTTAGATCCC 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43301834714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5