BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475803
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53490.1 | Symbols: | RING/U-box superfamily protein | chr1... 396 1e-109
AT1G53480.1 | Symbols: ATMRD1, MRD1 | mto 1 responding down 1 |... 387 6e-107
AT5G03090.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 222 2e-57
> AT1G53490.1 | Symbols: | RING/U-box superfamily protein | chr1:19963267-19966952
FORWARD LENGTH=2252
Length=2252
Score = 396 bits (214), Expect = 1e-109
Identities = 249/266 (94%), Gaps = 2/266 (1%)
Strand=Plus/Minus
Query 18 TTTTTTA-CCGGCGGCGGCTCTTCCTTCTTTGTGGCTTAATCAGAGACTTTTAAGTCGAC 76
||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||
Sbjct 691 TTTTTTAGCCGGCGGCGGCTCCTCCTTCTTTGTGGCTTAATCAAAGAGTTTTAAGTCGAC 632
Query 77 GGCGAGCAGAGGTAGTTTTCTCAGATGGAGGTTCGTTGGTGGATCTACAATGGGGAACTA 136
||||||| ||| ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 631 GGCGAGCGGAGATAGTTCTCTCAGATGGAGGTTCGTTGGTAGATCTACAATGGGGAACTA 572
Query 137 TAACTCTCGACGACGGCAGCAGATCTGGTGGATTTCTTCGTCAGTCTCTTCGCGGAGGTA 196
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TGACTCTCGACGACGGCAGCAGATCTGGTGGATTTCTTCGTCAGTCTCTTCGCGGAGGTA 512
Query 197 CCTCTCCTCCGATGAGCCTCTTTGGTGGCGGCGGCTCAGTGTTAAGAAGGGACAGAGGTA 256
||||||||||||||| |||| ||||| | || |||||||||||||||||| |||||||||
Sbjct 511 CCTCTCCTCCGATGAACCTCCTTGGTAGTGGTGGCTCAGTGTTAAGAAGGTACAGAGGTA 452
Query 257 GGCGAATCGTGGTTTTTCGAGCTTGG 282
|||| ||||||||||| |||||||||
Sbjct 451 GGCGGATCGTGGTTTT-CGAGCTTGG 427
Score = 193 bits (104), Expect = 1e-48
Identities = 114/119 (96%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 290 GGGGAGATAAGAAAACCATTTGGATTGTAGAAGAAGAAGGAAAGCTCTCCAATAATGCCC 349
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 328 GGGGAGAAAAGAAAACCATTTGGATTGTAGAAGAAGAAGGAAAGCTCTCCAATAAAGCCT 269
Query 350 CGGCTTCAAGAAATTTTTGTCTCAGCCCGGTTAATCCGGTTGAGTATCAGTCGGATTAG 408
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 268 CGACTTCAAGAAATTTTTGTCTCAGCCCGGTTGATCCGGTTGAGTATCAGTCGGATTAG 210
> AT1G53480.1 | Symbols: ATMRD1, MRD1 | mto 1 responding down 1
| chr1:19963214-19964712 REVERSE LENGTH=844
Length=844
Score = 387 bits (209), Expect = 6e-107
Identities = 242/258 (94%), Gaps = 1/258 (0%)
Strand=Plus/Plus
Query 25 CCGGCGGCGGCTCTTCCTTCTTTGTGGCTTAATCAGAGACTTTTAAGTCGACGGCGAGCA 84
||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 109 CCGGCGGCGGCTCCTCCTTCTTTGTGGCTTAATCAAAGAGTTTTAAGTCGACGGCGAGCG 168
Query 85 GAGGTAGTTTTCTCAGATGGAGGTTCGTTGGTGGATCTACAATGGGGAACTATAACTCTC 144
||| ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 169 GAGATAGTTCTCTCAGATGGAGGTTCGTTGGTAGATCTACAATGGGGAACTATGACTCTC 228
Query 145 GACGACGGCAGCAGATCTGGTGGATTTCTTCGTCAGTCTCTTCGCGGAGGTACCTCTCCT 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 GACGACGGCAGCAGATCTGGTGGATTTCTTCGTCAGTCTCTTCGCGGAGGTACCTCTCCT 288
Query 205 CCGATGAGCCTCTTTGGTGGCGGCGGCTCAGTGTTAAGAAGGGACAGAGGTAGGCGAATC 264
||||||| |||| ||||| | || |||||||||||||||||| ||||||||||||| |||
Sbjct 289 CCGATGAACCTCCTTGGTAGTGGTGGCTCAGTGTTAAGAAGGTACAGAGGTAGGCGGATC 348
Query 265 GTGGTTTTTCGAGCTTGG 282
|||||||| |||||||||
Sbjct 349 GTGGTTTT-CGAGCTTGG 365
Score = 193 bits (104), Expect = 1e-48
Identities = 114/119 (96%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 290 GGGGAGATAAGAAAACCATTTGGATTGTAGAAGAAGAAGGAAAGCTCTCCAATAATGCCC 349
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 464 GGGGAGAAAAGAAAACCATTTGGATTGTAGAAGAAGAAGGAAAGCTCTCCAATAAAGCCT 523
Query 350 CGGCTTCAAGAAATTTTTGTCTCAGCCCGGTTAATCCGGTTGAGTATCAGTCGGATTAG 408
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 524 CGACTTCAAGAAATTTTTGTCTCAGCCCGGTTGATCCGGTTGAGTATCAGTCGGATTAG 582
> AT5G03090.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: mto 1 responding down 1 (TAIR:AT1G53480.1); Has 7 Blast
hits to 7 proteins in 1 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:725281-725962 FORWARD
LENGTH=294
Length=294
Score = 222 bits (120), Expect = 2e-57
Identities = 165/186 (89%), Gaps = 5/186 (3%)
Strand=Plus/Plus
Query 101 ATGGAGGTTCGTTGGTGGATCTACAATGGGGAACTATAA-CTCTCGACGACGGCAGCAGA 159
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 20 ATGGAGGTTCGTTGGTGGATCTACAATGGGGAAC-ATTGGCTCTCGACGACTGCAGCAGA 78
Query 160 TCTGGTGGATTTC-TTCGTCAGTCTCTTCGCGGAGGTACCTCTCCTCCGATGAGCCTCTT 218
|||| ||| |||| ||| |||| | |||| |||||||||||||||||||||||||||| |
Sbjct 79 TCTGATGG-TTTCCTTCTTCAGCCCCTTCACGGAGGTACCTCTCCTCCGATGAGCCTCCT 137
Query 219 TGGTGGCGGCGGCTCAGTGTTAAGAAGGGACAGAGGTAGGCGAATCGTGGTTTTTCGAGC 278
|||||| || || ||||||||||||||| ||||||| ||| | ||||||||||| |||||
Sbjct 138 TGGTGGTGGTGGTTCAGTGTTAAGAAGGTACAGAGGGAGGTGGATCGTGGTTTT-CGAGC 196
Query 279 TTGGCT 284
||||||
Sbjct 197 TTGGCT 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19302815616
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5