BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475814
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2006 0.0
> AT1G67170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G14750.1);
Has 5478 Blast hits to 4354 proteins in 533 species: Archae
- 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants
- 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink).
| chr1:25127246-25129457 FORWARD LENGTH=1561
Length=1561
Score = 2006 bits (1086), Expect = 0.0
Identities = 1393/1534 (91%), Gaps = 49/1534 (3%)
Strand=Plus/Plus
Query 1 gaaaaaagaaattcacgccggtaaaaagaaaaaagaaaaaaaaaaaaCCTTCGCCGTCGT 60
||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 15 GAAAAAAAAAATTCACGCCGG-CAAAAG--AAAAG--AAAAAAAAAACCTTCGCCGTCGT 69
Query 61 TTGC-TACTCTTCGTCGCTCTATCTCAAAACTCGATCAAAT-ATCTTCGA-TTCTCCTCT 117
|||| || ||||| |||||||||| ||| |||||||||||| ||| | | | | |||
Sbjct 70 TTGCTTAGTCTTCTTCGCTCTATCCCAACACTCGATCAAATAATC--CCAGTGAGCTTCT 127
Query 118 TTCATT-CACAGTTGATAAGGACTTT---GAAGCTTTTGTTTTGATGGAAAGCAAAGGAA 173
| |||| || |||||||||||| ||| ||||| |||| ||| ||||||||||||||||
Sbjct 128 TCCATTCCA-AGTTGATAAGGAATTTGAAGAAGCCTTTG-TTTAATGGAAAGCAAAGGAA 185
Query 174 GAATCCATCCATCTCATCATCATATGAGGCGTCCTCTTCCAGGTCCCGGTGG-TGGTATT 232
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 186 GAATCCATCCATCTCATCATCATATGAGGCGTCCTCTTCCAGGTCCCGGTGGCT-GTATA 244
Query 233 GCACATCCCGAGACTTTTGGTAGTCACGGTGCTATACCGCCTTCTGCTGCTCAAGGTGCA 292
|| ||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct 245 GCGCATCCGGAGACTTTCGGTAATCACGGTGCTATACCACCTTCTGCTGCTCAAGGTGTG 304
Query 293 TATCCTTCTTTCAACATGTTACCTCCACCTGAAGTTATGGAGCAAAAGTTTGTGGCACAA 352
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TATCCTTCCTTCAACATGTTACCTCCACCTGAAGTTATGGAGCAAAAGTTTGTGGCACAA 364
Query 353 CACGGGGAATTGCAGAGACTTGCTATAGAGAATCAGAGACTTGGTGCAACTCATGGTAGT 412
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 365 CACGGGGAATTACAGAGACTTGCTATAGAGAATCAGAGACTTGGTGGAACTCATGGTAGT 424
Query 413 TTAAGACAAGAGCTAGCAGCAGCGCAGCATGAATTGCAGATGTTGCACGCGCAAATTGGG 472
|||||||||||| |||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 425 TTAAGACAAGAGTTAGCAGCAGCACAGCATGAAATACAGATGTTGCACGCGCAAATTGGG 484
Query 473 TCGATGAAGTCTGAGAGAGAGCAACGGATGATGGGTCTTGCTGAGAAAGTTGCGAAAATG 532
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 485 TCGATGAAGTCCGAGAGAGAGCAACGGATGATGGGTCTTGCTGAGAAAGTTGCTAAAATG 544
Query 533 GAGACTGAGCTTCAGAAGTCTGAGGCTGTGAATTTGGAGATGCAACAAGCACGTGCTGAG 592
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 545 GAGACTGAGCTTCAGAAATCTGAGGCTGTTAAGTTGGAGATGCAACAAGCACGTGCTGAG 604
Query 593 GCACGTAG-CTTGGTTGTGGCGAGGGAGGAGCTTATGTCTAAAGTTCATCAGTTGACTCA 651
||||| || ||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 605 GCACGGAGTCTT-GTTGTGGCTAGGGAGGAGCTTATGTCTAAAGTGCATCAGTTGACTCA 663
Query 652 GGAACTTCAGAAATCTCGTTCAGATGTGCAGCAAATACCTGCTCTGATGTCTGAACTTGA 711
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 664 GGAACTTCAAAAATCTCGTTCTGATGTGCAGCAAATACCTGCTCTGATGTCTGAACTTGA 723
Query 712 GAATTTAAGACAGGAGTACCAGCAGTGCAGGGCAACATATGACTATGAGAAGAAATTTTA 771
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 724 GAATCTAAGACAGGAGTACCAGCAGTGCAGGGCAACATATGACTATGAGAAGAAGTTTTA 783
Query 772 TAACGACCATCTCGAGTCACTTCAGGCAATGGAGAAGAACTACATGACTATGGCTAGGGA 831
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TAATGACCATCTCGAGTCACTTCAGGCAATGGAGAAGAACTACATGACTATGGCTAGGGA 843
Query 832 AGTTGAAAAACTTCAAGCACAGTTAATGAACAGTGCAAATTCAGACAGAAGAGCCGGTGT 891
|||||||||||||||||||||||| ||||||| |||||||||||| |||||||| ||||
Sbjct 844 AGTTGAAAAACTTCAAGCACAGTTGATGAACAATGCAAATTCAGATAGAAGAGCAGGTGG 903
Query 892 CCCTTATGGTAGCAACATGAATGCTGAAATTGACGCTTCTGGGCATCAGAGTGGAAATGG 951
||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 904 CCCTTATGGTAACAACATAAATGCTGAAATTGACGCTTCTGGACATCAGAGTGGAAACGG 963
Query 952 TTACTATGAAGATGCTTTTGGTCCCCAGGGATATATTCCTCAATCAGTTGCTGGTAACGC 1011
||| |||||||||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct 964 TTATTATGAAGATGCTTTTGGTCCTCAGGGATATATTCCTCAACCAGTAGCTGGTAACGC 1023
Query 1012 AGCTGGACCAAATTCAGTTGTTGGCGCAGCTCAATACCCTTATCCAGGAGTAACTCAGCC 1071
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1024 AACTGGACCAAATTCAGTTGTTGGCGCAGCTCAATACCCTTATCAAGGAGTAACTCAGCC 1083
Query 1072 AGGATACTTCCCTCCAAGACCCGGTTACAACTTCCCAAGAGGCCCTCCTGGTTCATATGA 1131
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1084 AGGATACTTCCCTCAAAGACCCGGTTACAACTTTCCAAGAGGCCCTCCTGGTTCATATGA 1143
Query 1132 CCCAACAACAAGGTTACCCACAGGACCTTACGGCGCTCCATTCCCACCTGGACCATCCAA 1191
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1144 CCCAACAACAAGGTTACCAACAGGACCTTACGGCGCTCCATTCCCACCTGGACCATCTAA 1203
Query 1192 CAATACTCCTTACG--GGT-CAG-CTGCAACAGCCG-GT-GCACGCGGAAACC-CTAG-T 1243
|||||||||||||| ||| || | | ||| || || ||| | || || | || |
Sbjct 1204 CAATACTCCTTACGCCGGTACACACGGAAAC--CCTAGTCGCA-GATGAGTCCACCAGCT 1260
Query 1244 C-G--TAGATGAGGCTACC-AGCTAAG-AG-TACATATTCCTTCAACTGTGGAAGTGTTA 1297
| || || | || | || | || |||| |||||||||||||||||| ||||
Sbjct 1261 AAGAGTACAT-ATA-TAAATAACTCACCAGCTACAGATTCCTTCAACTGTGGAATTGTTG 1318
Query 1298 CCTGTTTGGTCCCATAATCTT-ATGGGTAAAGAGAAGTTGGTACAGTGGTGAACGTTGAG 1356
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CCTGTTTGGTCCCATAATCTTTATGGGTAAAGAGAAGTTGGTACAGTGGTGAACGTTGAG 1378
Query 1357 TGCTATTGTTTAGCTGATTTTGTTGGGAGATCGACTTAGATTTGTTATGAGAAGGTTTTC 1416
|||||||||||| |||||||||||| ||| | ||| || || || ||||| |||||||
Sbjct 1379 TGCTATTGTTTAACTGATTTTGTTG--AGA--G-CTT-GACTT-TTGTGAGACGGTTTTC 1431
Query 1417 AACAAGTTTTGTGATAC-GAGAGATGTaaaatcgggaaagaaaaaacaaaggg-gaaaaa 1474
||||||||||||||||| ||||||||||| ||||||||||||||||||||| || |||
Sbjct 1432 AACAAGTTTTGTGATACAGAGAGATGTAACATCGGGAAAGAAAAAACAAAGAAAGAGAAA 1491
Query 1475 TTTATTGTTTGCCCTTCACCATTTTGTCTCTATG 1508
||| ||||||||||||||||||||||||||||||
Sbjct 1492 TTTGTTGTTTGCCCTTCACCATTTTGTCTCTATG 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74397207690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5