BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475815
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67180.1 | Symbols: | zinc finger (C3HC4-type RING finger) ... 1881 0.0
> AT1G67180.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein | chr1:25129731-25132169
FORWARD LENGTH=1450
Length=1450
Score = 1881 bits (1018), Expect = 0.0
Identities = 1280/1400 (91%), Gaps = 43/1400 (3%)
Strand=Plus/Plus
Query 1 ATGGAAAATGTGGTTGCAACTGTGAGTGGTTATCATGGGTCTGACAGGTTCAAGCTCATC 60
|||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 89 ATGGAAAATGTGGTTGCAACTGTGAGTGGTTATCATGGATCCGATAGGTTTAAGCTCATC 148
Query 61 AAGCTTATCTCTCATTCTGGAGCAAGTTATGTTGGGGCAATGTCAAAATCTATTACACAT 120
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 149 AAGCTTATTTCTCATTCTGGAGCAAGTTATGTTGGGGCAATGTCAAGATCTATTACACAT 208
Query 121 TTGGTGTGTTGGAAATTCGAGGGTAAAAAGTATGATCTTGCGAAGAAGTTTGGTACAGTA 180
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 209 TTGGTGTGTTGGAAATTTGAGGGCAAAAAGTACGATCTTGCAAAGAAGTTTGGTACAGTA 268
Query 181 GTAGTGAATCATCAATGGGTTGAAGAATGTGTGAGGGAAGGGAGGCGAGTTTCTGAGACG 240
||||||||||||| |||||| ||||||||||| | ||||||||| ||||||| ||||||
Sbjct 269 GTAGTGAATCATCGATGGGTGGAAGAATGTGTAAAGGAAGGGAGAAGAGTTTCCGAGACG 328
Query 241 CCTTATATGTTTGAGAGTGGGGAAGAGGTTGGACCGTTGATGATTGAACTTCCTGCGGTT 300
|||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| |||
Sbjct 329 CCTTATATGTTTGATAGTGGAGAAGAGGTTGGACCTTTGATGATTGAACTACCTGCAGTT 388
Query 301 TCTGGGGAAGCTAAAGTCACTAAGAAAGTGAATAAGGCTGCTGAAACTTTTGAGAAATAC 360
|||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 389 TCTGAGGAAGCTAAAGTCACTAAGAAAGTGAATAAGGCTTCTGAAACTTTTGATAAATAC 448
Query 361 TTTAGTAAAGGTGAAGAAAACCGGAGTGGCTCCACTTCTGAGCTTGCCACTTGGATGGAC 420
|||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 449 TTTAGTAATGGTGGAGAAAACCGGAGTGGCTCCACTTCTGAGCTTGCCAC-T---TGGA- 503
Query 421 TCTGTCTTGTTGAAAGAGAAAAATGTAGAAGCAAACAGACACTCAGTGCGATTAAGAACA 480
|| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 ----------TG---GAGAAAAATGTAGAAGCAAACAGACACTCAGTGCGATTAAGAACA 550
Query 481 AAGAGGCCGAGTAATATTTTTGAAGACAAGGAAAACACTGGCGTGGCAAAATCCTCGCGG 540
||||||||||||| |||| ||||| |||||||||||| ||| |||||| |||| || |||
Sbjct 551 AAGAGGCCGAGTAGTATTCTTGAAAACAAGGAAAACAGTGGTGTGGCAGAATCTTCACGG 610
Query 541 AAGGGAAAGAGGCAGTTAGTAAAGCAACGCTCTTGCAGAAACCTTATTGACCTAGAATCT 600
|| ||||| | || | |||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 611 AAAGGAAAAAAGCGGGTAGTAAAGCAACGCTCTTACAGAAACCTTATCGACCTTGAATCT 670
Query 601 GATGAGGAATCTGATAATAACCGTCATGAAAACTCTGATGAGAACCGAAATGAGACTCAG 660
|||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 671 GATGAGGAATCTGATAATAACCATCATGACAACTCTGATGAGAACCAAAATGAGACTCAG 730
Query 661 GATCCTAGAGAGCCTGCTGATGAAAATGAGAGGGGTTGTGTTTTCGAACAAGGAGAAACA 720
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 731 GATCATAGAGAGCCTGCTGATGAAAATGTGAGGGGTTTTGTTTTCGAACAAGGAGAAACA 790
Query 721 TCAGCTCTTCGACATCCTGCAGACTCT-GCAACACAAAACTGGGATGTAGATGAAATAGA 779
||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||||
Sbjct 791 TCAGCTCTTCGACATCCTGGAGACT-TGGCAACACCAAACTGGGATGTAGATGAAATAGA 849
Query 780 GGAGTCTGAGAATTGGAGTCATTCAGCTGTTTTTAAACGTCCAAGATCAATTAGTCCAGA 839
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 850 GGAGTCTGAGAATTGGAGTCATTCAGCTGTTTTTAAACGCCCTAGATCATTTAGTCCAGA 909
Query 840 GATAAAACCGCAAGATGATGGGTCAAACTACAACAAACCCGAATCAACAAGAGACGAGAC 899
||||||||| ||||||||| | | | || ||||||||||| |||||
Sbjct 910 GATAAAACCACAAGATGAT--G----A-T-----------GAGTCAACAAGAGAAGAGAC 951
Query 900 AGAAGCAACTCAGAAGGCTACTGCACAGGTTTCTTGTATCATATGCTGGACCGAGTTCAG 959
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 952 AGAAGCAACTGAGAAGGCTCCTGCACAAGTTTCTTGTATCATATGCTGGACCGAGTTCAG 1011
Query 960 TTCCAGTAGAGGCATTCTCCCTTGCGGCCACAGGTTTTGTTATTCGTGCATCCAAAAATG 1019
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1012 TTCCAGTAGAGGCATTCTCCCTTGCGGCCACAGGTTTTGTTATTCATGCATCCAAAAATG 1071
Query 1020 GGCAGACCGTTTGGTTTCAGAAAGAAAGAAGACAACATGTCCATTGTGCAAGTCTAATTT 1079
|||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 1072 GGCAGACCGTTTGGTTTCAGAAAGAAAGAAAACAACATGTCCACTGTGCAAGTCCAATTT 1131
Query 1080 CATCACCATCACAAAGATAGAAGACGCTGATTCTTCCGATCAAAAGATATATTCACAAAC 1139
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1132 CATCACAATCACAAAGATAGAAGACGCTGATTCTTCCGATCAAAAGATATACTCACAAAC 1191
Query 1140 CGTCCCTGACTTATCTTCAACAAATAACACCCTTGTAGTACTCCCTGAAGAAGAA---CA 1196
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1192 AGTCCCTGACTTATCTTCAACAAATAACATTCTTGTAGTACTCCCTGAAGAAGAAGAACA 1251
Query 1197 AAGACAAACTTTTAATCCACTAACTCGAGCTTCAGGTTGCAGCAGATGCTACTTGACTGA 1256
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1252 AAGACAAACTCTCAATCCACTGACTCGAGCTTCAGGTTGCAGCAGATGCTACTTGACTGA 1311
Query 1257 GCCAGAGGAGCTTCTCATAAGATGTCACCTCTGCAATTTCCGGCGAATCCACTCGTATTG 1316
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1312 GCCAGAGGAGCTTCTGATAAGATGTCACCTCTGCAATTTCCGGCGAATCCACTCCTATTG 1371
Query 1317 TTTAGACCCTTATCTACTTCCTTGGACCTGCAACCATTGCAATGATCTTCAGATGATGTA 1376
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1372 TTTAGACCCTTATCTGCTTCCTTGGACCTGTAACCATTGCAATGATCTTCAGATGATGTA 1431
Query 1377 CCAGCGTCGTCA-CTACTAA 1395
||| ||||| || |||||||
Sbjct 1432 CCACCGTCG-CAACTACTAA 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5