BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475816
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67190.1 | Symbols: | F-box/RNI-like superfamily protein | ... 2189 0.0
> AT1G67190.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:25132574-25134431 FORWARD LENGTH=1513
Length=1513
Score = 2189 bits (1185), Expect = 0.0
Identities = 1389/1486 (93%), Gaps = 19/1486 (1%)
Strand=Plus/Plus
Query 1 GTCGTCGTCTCTCTCATTTTCTTCTTCTCCTCTAATAACCAGATCGCCTCCTCCAA--AT 58
||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||
Sbjct 1 GTCGTCGTCTCTCTCATTTTCTTCTCCT-CTAAAATAACCAGATCGCCTCCTCCAATCAT 59
Query 59 CTTCTTCTTCCTCCTCCCAGATCCACCGTCTTCATAC-CTTTTCTTCATCCCGGAGAACC 117
|||||||||||||||| ||||||||||||| ||| || |||| |||||||||||||| |
Sbjct 60 CTTCTTCTTCCTCCTCGCAGATCCACCGTCGTCA-ACTATTTTATTCATCCCGGAGAA-C 117
Query 118 T-AAATCGGTATACAGATCGAATTATGGACTATCTTCCTGTGGAAGTTATTGGAAACATA 176
| |||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TAAAATCGGT-T-----TCGAATTATGGACTATCTTCCTGTGGAAGTTATTGGAAACATA 171
Query 177 CTCTCACGTCTCGGAGGAGCTCGGGATGTTGTGATAGCTTCTGCAACATGTAGGAAATGG 236
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 172 CTCTCACGTCTCGGAGGAGCTCGTGATGTTGTGATAGCTTCAGCAACATGTAGAAAATGG 231
Query 237 CGAGAAGCTTGTCGAAAACATCTACAGACACTTTCTTTCAATTCCGCTGATTGGCCGTTT 296
|||||||||||| | |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 232 CGAGAAGCTTGTAGGAAACATCTTCAAACACTTTCTTTCAATTCCGCTGATTGGCCGTTT 291
Query 297 TATCGAGATCTCACAACGAATCGTTTAGAGATCCTTATAACTCAAACCATTTTCCAAATC 356
|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 292 TATCGAGACCTTACAACGAATCGTTTAGAGATTCTTATAACTCAAACCATTTTCCAAACC 351
Query 357 ACGGGACTGCAAGGTCTTTCTATTATGATGGATGATGCGAATAAGTTTTCGGCTGCCACG 416
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATGGGGCTGCAAGGTCTTTCTATTATGATGGATGATGCGAATAAGTTTTCGGCTGCCACA 411
Query 417 GTTATTGCTTGGCTTATGTATACGAGGGATACTTTGCGCCGGTTGTCTTATAATGTTC-G 475
||||| |||||||||||||||||||| || |||||||| | ||||||||||||| || |
Sbjct 412 GTTATCGCTTGGCTTATGTATACGAGAGACACTTTGCGGAGATTGTCTTATAATG-TCAG 470
Query 476 TACTACTCCTAATGTTAACATTCTTGAAATCTGTGGGAGGCAGAAGCTTGAAGCTTTGGT 535
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GACGACTCCTAATGTTAACATTCTTGAAATCTGTGGGAGGCAGAAGCTTGAAGCTTTGGT 530
Query 536 TTTGGCTCATAATTCTATTACTGGAGTTGAACCAAGTTTTCAGAGATTTCCTTGTTTGAA 595
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 531 TTTGGCTCATAATTCTATTACTGGTGTTGAACCAAGTTTTCAGAGGTTTCCTTGTTTGAA 590
Query 596 ATCGCTTTCGTTGAGTTATGTTAGCATTTCAGCTTTGGATTTGAATCTTTTGCTTAGTGC 655
|| || || ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 591 GTCTCTGTCACTGAGTTATGTTAGTATTTCAGCTTTGGATTTGAATCTTTTGCTTAGTGC 650
Query 656 ATGCCCGATGATCGAGAGTTTGGAACTTGTGAGTTTGGAGATTGCAATGTCGGATGCGCA 715
|| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 651 TTGTCCGATGATCGAGAGTTTGGAACTTGTGAGTCTCGAGATTGCAATGTCGGATGCGCA 710
Query 716 AGTGACGATTGAACTGAGCAGCCCGACGCTGAAGAGTGTTTATTTCGATGGGATTAGTTT 775
|||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AGTGACAATTGAGTTGAGTAGCCCGACGCTGAAGAGTGTTTATTTCGATGGGATTAGTTT 770
Query 776 GGATAAGTTCATATTGGAGGCTGATAGTATCGAGTTCTTGCACATGAAAGACTGTGTTCT 835
||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 771 GGATAAGTTTATCTTGGAGGCTGATAGTATTGAGTTCTTGCATATGAAAGACTGTGTTCT 830
Query 836 CGAGCTCTTTGAGCTTATAGGAAACGGAACTTTGAAGCATTTTAAGCTCGACGATGTCAG 895
|||||| |||||||| ||||||||||| |||||||||||||||||||| || ||||| ||
Sbjct 831 CGAGCTTTTTGAGCTAATAGGAAACGGGACTTTGAAGCATTTTAAGCTTGATGATGTTAG 890
Query 896 TGTTATACATCTTGATATCATGGAGACATCTGAAAGCCTTGAAGTAGTTGATGTCAATCA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TGTTATACATCTTGATATCATGGAGACATCTGAAAGCCTTGAAGTAGTTGATGTCAATCA 950
Query 956 CTTCACAATGGTTTGGCCAAAGTTCTACCAGATGATCTCAAGATCTCAGAAACTAAAGAA 1015
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 951 CTTCACAATGGTTTGGCCAAAGTTCTATCAGATGATCTCAAGGTCACAGAAACTAAAGAA 1010
Query 1016 ACTCCGTCTGTGGGATGTGGTCTTTGATGATGACGATGAAATCATCGATGTTGAGTCCAT 1075
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1011 ACTTCGTCTTTGGGATGTGGTTTTTGATGATGACGATGAAATCATCGATGTTGAGTCCAT 1070
Query 1076 TGCTGCTGGTTTCTCTCACCTGACCCATCTTTCATTAAGCTACGATCTTAAAGATGGAGC 1135
||| |||||||||||||||||||| |||||||| |||||||| || ||||||||||||||
Sbjct 1071 TGCCGCTGGTTTCTCTCACCTGACTCATCTTTCGTTAAGCTATGACCTTAAAGATGGAGC 1130
Query 1136 TGCTCATTACAGTTTGCAAGGGACCACTCAGTTGGAGAACGTGACTGTATTGGAGCTCGG 1195
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1131 TGCTCATTACAGTTTGCAAGGGACTACTCAGTTGGAGAACGTGACTGTATTGGAGCTCGG 1190
Query 1196 ATGGACCGTGATCAACGATGTTTTCTCAATCTGGGTCGAGGAGTTGCTGAGAAGATGTCC 1255
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 ATGGACTGTGATCAACGATGTTTTCTCAATCTGGGTCGAGGAGTTGCTGAGAAGATGTCC 1250
Query 1256 GAATCTGAAGAAGTTGATCATTTATGGGGTTGTCTCAGAAACCAAAACACAAGGAGATTG 1315
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GAATCTGAAGAAGCTGATCATTTATGGGGTTGTCTCAGAAACCAAAACACAAGGAGATTG 1310
Query 1316 TCAAATTCTGGCGACATTCACATGGTCCATTGTTCAACTCATGAGGAAATACATTCATGT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1311 TCAAATTCTGGCGACATTCACATGGTCCATTGTTCAACTCATGAGGAAATATATACATGT 1370
Query 1376 TGAGGTACAATTCGAATACGAGTAAACGATTCGTCTTCTCGATGTTGTTGAAAACAAGTT 1435
|||||||||||| || || ||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1371 TGAGGTACAATTTGAGTATGAGTAAACGATTCTTCTTCTCCATGTTGTTGAAAACAAGTT 1430
Query 1436 TAAAGATTGTGTAAAGATTTGAATTTTGGATTAGTTATTCAAAATT 1481
| |||||||||||||||| ||||||||| | |||||||||||||
Sbjct 1431 TGAAGATTGTGTAAAGATATGAATTTTG--T--GTTATTCAAAATT 1472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74397207690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5