BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475817

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G67195.1 | Symbols: MIR414 | MIR414 (MICRORNA 414) | chr1:25...   503    6e-142


> AT1G67195.1 | Symbols: MIR414 | MIR414 (MICRORNA 414) | chr1:25137111-25137937 
REVERSE LENGTH=596
Length=596

 Score =  503 bits (272),  Expect = 6e-142
 Identities = 320/341 (94%), Gaps = 12/341 (4%)
 Strand=Plus/Plus

Query  1    CTCCATTTTCATCTTCTCTCATATCTACAAGCCACACTTTTGAGTTCTTCTACATATATT  60
            |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct  1    CTCCATTTTCATCTTCTCTCATATCTACAAACCACACTTTTAAGTTCTTCTACATATATT  60

Query  61   AGATGGTGGTGAGGATGAGATTAGGGAAGATTGTGGAAGGCTTGAAGTCGAAGATAAAGA  120
            |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct  61   AGATGGTGGTGAGGATGAGACTAGGAAAGATTGTGGAAGGCTTGAAGTCGAAGATAAAGA  120

Query  121  TTGGTCTAAGGATGCGGAAGAGatcatcattatcatcatcatcat---c-t-t-catc-t  173
             ||||||||||||||||||||||||||||||||||||||||||||   | | | |||| |
Sbjct  121  CTGGTCTAAGGATGCGGAAGAGATCATCATTATCATCATCATCATATTCATCTTCATCAT  180

Query  174  --tc---atcatcatcatcatcGTCGTATGAGAAGATAGAGAAGAGTGAGAGTATGAGAT  228
              ||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  181  CATCGTCATCATCATCATCATCATCGTATGAGAAGATAGAGAAGAGTGAGAGTATGAGAT  240

Query  229  TTGAGTTGAGAAGCAGAAAGGCACACAAAATTATCCAAGAAACCCTTCAAATTGCTGACT  288
            ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct  241  TTGAGTTGAGAAGCAAAAAGGCTCACAAAATTATCCAAGAAACCCTTCAAATTGCTGACT  300

Query  289  CTCCCACTTCAAGAACTTATGCTTTTTGATTTCATCTTTTT  329
            ||||||||||||||||||||||||| |||||||||||||||
Sbjct  301  CTCCCACTTCAAGAACTTATGCTTTCTGATTTCATCTTTTT  341



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20760580337


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5