BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475818
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67210.1 | Symbols: | Proline-rich spliceosome-associated (... 2104 0.0
AT5G38600.1 | Symbols: | Proline-rich spliceosome-associated (... 619 2e-176
AT2G14475.1 | Symbols: | pseudogene, similar to putative beta ... 228 1e-58
> AT1G67210.1 | Symbols: | Proline-rich spliceosome-associated
(PSP) family protein / zinc knuckle (CCHC-type) family protein
| chr1:25140815-25144043 FORWARD LENGTH=1673
Length=1673
Score = 2104 bits (1139), Expect = 0.0
Identities = 1342/1436 (93%), Gaps = 29/1436 (2%)
Strand=Plus/Plus
Query 58 TTTTTGTTTCCCGTTGATAAAGGGTTTATCATTGGTGGATGATTAGTGAAACTTTTTAAG 117
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 97 TTTTTGTTTCCCGTTGATAAAGGGTTTATCTTTGGTGGATGATTAGTGAAACTTTTTAAG 156
Query 118 GAGATAATAGTTTACTA-GATTTAGTTAAAAATGGCAGCTTCAAGCGGCTCTGGTTTGGA 176
|||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GAGATAATAGTTCAC-ATGTTTTAGTTAAAAATGGCAGCTTCAAGCGGCTCTGGTTTGGA 215
Query 177 AGCTGAAGAAGGGGAAATAAGTATAGACATGGAGGAAGACATGGATCTAACAGAAGATGA 236
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 AGCTGAGGAGGGGGAAATAAGTATAGACATGGAGGAAGACATGGATCTAACAGAAGATGA 275
Query 237 TTTCAGAAATGTGTCTGGCCAGTTTTCAGGGGAAGCATCGATAGTGGAGGTTCGGGATGC 296
|||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 276 TTTCAGAAATGTGTCTGGCCAGTTTTCAGGACAAGCATCGATCGTGGAGGTTGGGGATGC 335
Query 297 TGTCAATGTCAGTGTTGAAACCGTTAAAGTGGATGTTAGCTCTAAATCTGGTGTTAAAAG 356
||| |||| || || |||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 336 TGTTGATGTGAGAGTCGAAACCGTGAAAGTAGATGTTAGTTCTAAATCTGGTGTTAAAAG 395
Query 357 ACCCAGAACAATCTCTCTGGAACAGCAACCTTCTGTCCATGTTACTTATAAACACTTAAC 416
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 396 AGCCAGAACAATCTCTCTGGAACAGCAACCTTCAGTCCATGTTACTTATAAACACTTAAC 455
Query 417 AAGAAATAGTAAGCAGAAGCTGGAAAGTTTATTACAGCAATGGTCAGAATGGGAAGCAGA 476
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 456 AAGAGATAGTAAGCAGAAGCTGGAAAGTTTATTACAGCAATGGTCAGAATGGGAGGCAGA 515
Query 477 ACAAAATTCCTTCTCTGAGGATCAAGAACAAGTACTAGAATCTGGTGATGAGACATATTT 536
|||||||||||| || |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 516 ACAAAATTCCTTGTCCGAGGATCAAGAACAAGTACTAGAAGCTGGTGATGAGACATACTT 575
Query 537 TCCTGCTTTGCGTGTGGGATTGCAGAAGACATCATCTGTATCATTTTGGTTTGACTACCA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TCCTGCTTTGCGTGTGGGATTGCAGAAGACATCATCTGTATCATTTTGGTTTGACTACCA 635
Query 597 AACTGGTCACAGTTCTTCGAAGAAGTCTGTTCCAGTGGAAAGTAGCACTACTCCTCTTTA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 AACTGGTCACAGTTCTTCGAAGAAGTCTGTTCCAGTGGAAAGTAGCACTACTCCTCTTTA 695
Query 657 TAATCGTGGATTTACAATTGGTTTAGATTCAGGTGGTGGTTCAAATAACTTGGAAGGAGG 716
||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 696 TAACCGTGGATTTACAATTGGTTTAGATTCAGGT--T----CAAATAACGTGGAAGGAGG 749
Query 717 CTTGGAGATTATTGATGATCCTCCACGTTGCTTCAATTGTGGTGCATACAGTCATTCCAT 776
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 750 CTTGGAGATTATTGATGATCCTCCACGTTGCTTCAACTGTGGCGCATACAGTCATTCTAT 809
Query 777 TAGAGAATGTCCAAAGCCTTTTGATCGATCAGCAGTTAGTAATGCTCGGAGGGAACATAA 836
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 810 TAGAGAATGTCCAAGGCCTTTTGATCGATCAGCAGTTAGTAATGCTCGGAGGCAACATAA 869
Query 837 AAGCAAAAGAAACCAGACTTCTGGATCCCGTCTACCGTCCCGATATTATCAGAGCCCTCA 896
||| |||||||| |||||| |||||||||||||||| ||| ||||||||||||||| |||
Sbjct 870 AAGAAAAAGAAATCAGACTCCTGGATCCCGTCTACCATCCAGATATTATCAGAGCCTTCA 929
Query 897 AGGTGGAAAATATGATGGCTTGAAGCCTGGCTCACTTGATGCAGAGACGCGTAAACTTCT 956
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 930 ACGTGGAAAATATGATGGCTTGAAGCCTGGCTCACTTGATGCAGAGACGCGTAAGCTTCT 989
Query 957 TGGTCTAAAGGAACTCGATCCTCCTCCATGGCTTAACAGAATGCGAGAGATTGGATATCC 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 CGGTCTAAAGGAACTCGATCCTCCTCCATGGCTTAACAGAATGCGAGAGATTGGATATCC 1049
Query 1017 ACCAGGATATTTGGGTGTAGAAGACA-ACGATGATC-TC--TCGGGAATCACTATATTTG 1072
|||||||||||| | ||||||||| | |||||||| || ||| |||| ||||||||||
Sbjct 1050 ACCAGGATATTTTGCTGTAGAAGA-AGACGATGATGATCACTCGAGAATAACTATATTTG 1108
Query 1073 GTGAGGAAGAGACTAAAGAAGAGGAAGAAGTTAAGACTGAGGAAGGTGAAATCTTGGAAG 1132
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1109 GTGAGGAAGAGACTAAAGAAGAGGAAGAAGTTAAGACTGAAGAAGGTGAAATCTTGGAA- 1167
Query 1133 AAAAAGCAAGCCCTCAAGAGCCAAGAAGGATAATGACAGTTGGGTTTCCCGGGATTAACG 1192
||| || ||||||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct 1168 AAA--GCTAGCCCTCAAGAGCCAAGAAAGATAATGACAGTTGGATTTCCCGGTATTAACG 1225
Query 1193 CACCCATACCAGAAAACGCAGATTCATGGCTATGGGAACAGAGGAATA--A-CACAGGGC 1249
||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 1226 CACCCATTCCAGAAAACGCAGATTCGTGGCTATGGGAACAGAGGAATAGTAACACAGGAC 1285
Query 1250 ATACTTATTATCATGATCACCTTCGACCACAAAATCATGGATATGAGATGGGCCCTCTAG 1309
||||| |||||||| ||||||||||||||||| | ||| | || ||||||||||||
Sbjct 1286 ATACTAATTATCATAATCACCTTCGACCACAA--T-ATG-A---GA--TGGGCCCTCTAG 1336
Query 1310 GTATTCAACTGTCTTCGAGCTTTCCTCCAAGGTATGGCATTAGATATGATCATGGGTTCG 1369
|||||||||||||||| ||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1337 GTATTCAACTGTCTTCAAGCTTTCCTCCAATGCATGGCATTAGATATGATCATAGGTTCG 1396
Query 1370 GTTTATGACCAATAAGCCCGGGATCCGAAAGAGTTAAGATCCATTC-AGTTTTAGCAGCA 1428
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1397 GTTTATGACCAATAAGCCCGGGATCCGAAAGAGTTAAGATCCATTTTAGTTTTAGCAGCA 1456
Query 1429 GAAGGTGGATTCATTAGTGAGTGTGGGATGTATAATAACCATTAGTTAAAGAGTTA 1484
|||| | ||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1457 GAAGATAGATTCATTAGTGAATGTGGGATGTATGATAACCATTAGTTAAAGAGTTA 1512
Score = 100 bits (54), Expect = 3e-20
Identities = 59/61 (97%), Gaps = 2/61 (3%)
Strand=Plus/Plus
Query 1 TTCTTGGGCGGACCAATAAAAGCCTCTCTTTTGAATCCCCCACA--GATCTATCGCCTCT 58
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 15 TTCTTGGGCGGACCAATAAAAGCCTCTCTTTTGAATCCCCCACACAGATCTATCGCCTCT 74
Query 59 T 59
|
Sbjct 75 T 75
> AT5G38600.1 | Symbols: | Proline-rich spliceosome-associated
(PSP) family protein / zinc knuckle (CCHC-type) family protein
| chr5:15456595-15460767 FORWARD LENGTH=2039
Length=2039
Score = 619 bits (335), Expect = 2e-176
Identities = 737/927 (80%), Gaps = 44/927 (5%)
Strand=Plus/Plus
Query 326 TGGATGTTAGCTCTAAATCTGGTGTTAAAAGACCCAGAACAATCTCTCTG--GAACAGCA 383
|||||||||| |||||| | ||||||||||||||| |||| ||| | || ||||||||
Sbjct 444 TGGATGTTAGTTCTAAAGCGGGTGTTAAAAGACCCCGAAC-ATC-GTATGACGAACAGCA 501
Query 384 ACCTTCTGTCCATGTTACTTATAAACACTTAACAAGAAATAGTAAGCAGAAGCTGGAAAG 443
||| | ||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 502 GCCTACAGTCCATGTTACTTATAAGCACTTAACGAGAGCTAGTAAGCAGAAGCTGGAAAG 561
Query 444 TTTATTACAGCAATGGTCAGAATGGGAAGCAGAACAAAAT-TCCTTCTCTGAGGATCAAG 502
|||||||||| |||||||||||||||| || ||| || | ||||| || |||||||||
Sbjct 562 TTTATTACAGAAATGGTCAGAATGGGAGGCTGAA-AATACGTCCTTGGCTCAGGATCAAG 620
Query 503 AACAAGTACTAGAATCTGGTGATGAGACATATTTTCCTGCTTTGCGTGTGGGATTGCAGA 562
||||| || | ||||||||||| ||||||| ||| || || | ||||| ||||||||||
Sbjct 621 AACAACTATTCGAATCTGGTGAAGAGACATGTTTCCCCGCCATACGTGTTGGATTGCAGA 680
Query 563 AGACATCATCTGTATCATTTTGGTTTGACTACCAAACTGGTCACA-GTTC-TTCGAAGAA 620
|||| || ||||| ||||| ||| | ||| ||||||||||||| | | | || |||||
Sbjct 681 AGACTTCGTCTGTGTCATTCTGGATCGACAACCAAACTGGTCATAAGC-CGTTGGAAGAT 739
Query 621 GTCTGTTCCAGTGGAAAGTAGCACTACTCCTCTTTATAATCGTGGATTTACAATTGGTTT 680
| ||||| ||||||||||||||| |||||||||||| | ||| |||| | || |||||
Sbjct 740 TT-TGTTCTAGTGGAAAGTAGCACCACTCCTCTTTATGACCGTAAATTTGCTATAGGTTT 798
Query 681 AGATTCAGGTGGTGGTTCAA-ATAACTTGGAAGGAGGCTTGGAGATTATTGATGAT---C 736
| |||||| | ||| |||| | ||| ||||||| || |||||||||||||||||| |
Sbjct 799 AAATTCAGCAGATGGCTCAAGA-AACGTGGAAGGGGGATTGGAGATTATTGATGATGATC 857
Query 737 CTCCACGTTGCTTCAATTGTGGTG-CATACAGTCATTC-CATTAGAGAATGTCCAAAGCC 794
|||||||||||||||||||||||| | || |||||||| | | ||||||||||||| |||
Sbjct 858 CTCCACGTTGCTTCAATTGTGGTGGC-TATAGTCATTCTC-TAAGAGAATGTCCAAGGCC 915
Query 795 TTTTGATCGATCAGCAGTTAGTAATGCTCGGAGGGAACATAAAAGCAAAA-GAAACCAGA 853
||||||||||||||| |||| || |||||||| | || ||| | ||| |||| ||||
Sbjct 916 TTTTGATCGATCAGCGGTTAATAGTGCTCGGAAGCTTCAGAAAT-CTAAACGAAATCAGA 974
Query 854 CT--TC-TGGATCCCGTCTACCGTCCCGATATTATCAGAGCCCTCAAGGTGGAAAATATG 910
| | ||| |||||||||| || |||||||||| | ||||| |||||| ||||
Sbjct 975 ATAGTAGTGGGCCCCGTCTACCATCAAGATATTATCAAAAAACTCAAACTGGAAAGTATG 1034
Query 911 ATGGCTTGAAGCCTGGCTCACTTGATGCAGAGACGCGTAAACTTCTTGG-TCTAAAGGAA 969
|||||||||| || ||| |||||||||||||||| ||| | ||||| | ||| ||||
Sbjct 1035 ATGGCTTGAAACCCGGCACACTTGATGCAGAGACTCGTCAGCTTCT-GAATCTGGGGGAA 1093
Query 970 CTCGATCCTCCTCCATGGCTTAACAGAATGCGAGAGATTGGATATCCACCAGGATATTTG 1029
|| || |||||||| ||||| |||||||||||||| ||||| || ||||||||||| ||
Sbjct 1094 CTAGACCCTCCTCCGTGGCTAAACAGAATGCGAGAAATTGGGTACCCACCAGGATACTTA 1153
Query 1030 GGTGTAGAAGACAACGATGATCTCTCGGGAATCACTATATTTGGTGAGGAAGAGACTAAA 1089
| | |||||| ||| || | || ||||| |||||||| || || ||||| | |
Sbjct 1154 GCTCCAGAAGAT---GATCATTTGTCTGGAATAACTATATTCGG--AG-AAGAGG-TGGA 1206
Query 1090 GAAGAGGAAGAAGTTA-AGACTGAGGAAGGTGAAATCTTGGAAGAA--AAAGCAAGCCCT 1146
|| || || || || ||| |||||| || ||||| |||||| || ||| || || |
Sbjct 1207 GACTCGGGAGGAGATAGAGAGTGAGGATGGGGAAATTTTGGAAAAAGCAAACCAT-CC-T 1264
Query 1147 CAAGAGCCA-AGAAGGATAATGACAGTTGGGTTTCCCGGGA-TTAACGCACCCATACCAG 1204
| ||||||| | || || || ||| || | |||||| |||| ||||||| ||| | ||||
Sbjct 1265 CCAGAGCCACA-AATGAAAAAGACCGTCGAGTTTCC-GGGAATTAACGCTCCCTTCCCAG 1322
Query 1205 AAAACGCAGATTCA-TGGCTATGGGAA 1230
||||||||||| | ||||| ||||||
Sbjct 1323 AAAACGCAGATG-AGTGGCTTTGGGAA 1348
> AT2G14475.1 | Symbols: | pseudogene, similar to putative beta
proteasome subunit, blastp match of 64% identity and 2.7e-16
P-value to GP|14594921|emb|CAC43321.1||AJ291736 putative
beta proteasome subunit {Nicotiana tabacum} | chr2:6163928-6164963
REVERSE LENGTH=1036
Length=1036
Score = 228 bits (123), Expect = 1e-58
Identities = 148/160 (93%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 177 AGCTGAAGAAGGGG-AAATAAGTATAGACATGGAGGAAGACATGGATCTAACAGAAGATG 235
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGCTG-AGGAGGGGTAAATAAGTATAGACATGGAGGAAGACATGGATCTAACAGAAGATG 896
Query 236 ATTTCAGAAATGTGTCTGGCCAGTTTTCAGGGGAAGCATCGATAGTGGAGGTTCGGGATG 295
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 897 ATTTCAGAAATGTGTCTGGCCAGTTTTCAGGGCAAGCATCGATAGTGGAGGTTGGGGATG 956
Query 296 CTGTCAATGTCAGTGTTGAAACCGTTAAAGTGGATGTTAG 335
|||| |||| || || |||||||| ||||| ||||||||
Sbjct 957 CTGTGTATGTGAGAGTCGAAACCGTGAAAGTAGATGTTAG 996
Score = 137 bits (74), Expect = 2e-31
Identities = 94/103 (91%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 78 AGGGTTTATCATTGGTGGATGATTAGTGAAACTTTTTAAGGAGATAAT-AGTTTACTA-G 135
|||||||||| ||||||||||||||||||||| |||| |||||| ||| | ||||| | |
Sbjct 473 AGGGTTTATCTTTGGTGGATGATTAGTGAAACGTTTTGAGGAGAGAATAATTTTAC-ACG 531
Query 136 ATTTAGTTAAAAATGGCAGCTTCAAGCGGCTCTGGTTTGGAAG 178
||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TTTTAGTTAAAAATGGCAGCTTCAAGCGGCTCTGGTTTGGAAG 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73192394610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5