BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475824
Length=1979
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67290.1 | Symbols: | glyoxal oxidase-related protein | chr... 2815 0.0
> AT1G67290.1 | Symbols: | glyoxal oxidase-related protein | chr1:25191021-25193237
REVERSE LENGTH=2072
Length=2072
Score = 2815 bits (1524), Expect = 0.0
Identities = 1719/1812 (95%), Gaps = 17/1812 (1%)
Strand=Plus/Plus
Query 176 TGATGATCATACTTCATTGGAAGGCATGACAATTAAACGTGAAGCCATGGAAGTGAAACC 235
||| |||||||||||||||||||||||| |||||||||||||| | ||||| |||||
Sbjct 230 TGAGGATCATACTTCATTGGAAGGCATG---GTTAAACGTGAAGCCCTCGAAGTAAAACC 286
Query 236 ACCAAAAGCTGGCAAACGCAAAGGTAAAGGTAAAGGTCGTGGCACCGTCGCCGCAGGACC 295
|||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 287 ACCAAAAGCTGGCAAAGGCAAAGGCAAAGGTAAAGGTCGTGGCACCGTTGCCGCAGGACC 346
Query 296 TGAGATGAATTGGCCTGGACAATGGGAGTTATTCATGAAGAATTCTGGTGTATCAGCCAT 355
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 347 TGAGATGAATTGGCCTGGACAATGGGAGTTATTCATGAAGAATTCTGGTGTTTCAGCCAT 406
Query 356 GCACGCAATTTTGATGCCTTTGATTAATAAAGTTCAGTTTTACGACGCAACCATTTGGAG 415
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 407 GCACGCAATTTTGATGCCTTTGATCAATAAAGTTCAGTTTTACGACGCAACCATTTGGAG 466
Query 416 AATTTCACAAATCAAGTTGCCTCCTGGCGTAGCTTGCCATGTTTATGA--CCAAAAGGCG 473
||||||||||||||| |||||||| |||||| |||||||||||| ||| ||||||
Sbjct 467 AATTTCACAAATCAAATTGCCTCCAGGCGTACCTTGCCATGTTTTTGACGCCAAAA--AA 524
Query 474 AACAAAATTGATTGTTGGGCTCACTCTGTCCTCGTTGATATCAACACCGGAAACATCAAG 533
|| ||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 525 AATAAAGTTGATTGTTGGGCTCACTCTGTCCTCGTCGATATTAACACCGGAGACATCAAG 584
Query 534 CCTCTTGCGCTTACAACAGACACATGGTGTTCGTCGGGAGGTTTAACCGTAAACGGTACT 593
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 585 CCTCTTGCGCTTACAACAGACACATGGTGTTCTTCTGGAGGTTTAACCGTAAACGGTACT 644
Query 594 TTGGTAAGTACTGGAGGATTCCAAGGAGGAGCAAACACGGCAAGGTACCTATCCACCTGC 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 645 TTGGTAAGTACTGGAGGATTCCAAGGAGGAGCAAACACGGCAAGGTACCTATCCACATGC 704
Query 654 GAAAACTGTGTATGGATTGAATATCCAAAGGCACTCGCTGCAAGGAGATGGTACTCAACA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GAAAACTGTGTATGGATTGAATATCCAAAGGCACTCGCTGCAAGGAGATGGTACTCAACA 764
Query 714 CAAGCCACTCTTCCCGATGGCACTTTCATCGTTGTTGGAGGCCGCGACGCTCTCAACTAC 773
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 765 CAAGCCACTCTTCCTGATGGAACTTTCATCGTTGTTGGAGGCCGTGACGCTCTCAACTAC 824
Query 774 GAGTATATCCTTCCAGAAGGACAAAACAACAAGAAACTCTATGACTCACAACTTCTTAGA 833
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GAGTATATCCTTCCGGAAGGACAAAACAACAAGAAACTCTATGACTCACAACTTCTTAGA 884
Query 834 CAAACAGATGATCCAGAAGAAAACAATCTTTACCCTTTTGTTTGGCTTAATACCGATGGT 893
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 885 CAAACAGATGATCCAGAAGAAAACAATCTTTACCCTTTTGTTTGGCTTAACACTGATGGT 944
Query 894 AACCTCTTCATTTTCGCCAACAACCGATCCATTCTTCTTAGCCCGAAAACAAATAAAGTG 953
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 945 AACCTCTTCATTTTCGCCAACAACCGATCCATTCTTCTTAGCCCGAAAACAAACAAAGTG 1004
Query 954 CTCAAAGAGTTCCCTCAACTTCCCGGTGGTGCCCGTAACTACCCTGGTTCCGCCTCTTCG 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1005 CTCAAAGAGTTCCCTCAACTTCCCGGTGGTGCCCGTAACTACCCTGGTTCCGCCTCCTCG 1064
Query 1014 GCTCTTCTCCCCATCCGCCTCTACGTTCAAAACCCCGCTGTCATCCCCGCTGATGTCCTC 1073
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1065 GCTCTTCTCCCCATCCGCCTCTACGTCCAAAACCCCGCTATCATCCCCGCTGATGTCCT- 1123
Query 1074 A-TTTGTGGTGGTGCAAAACAAGACGCTTACTTCCGCGCTGAGAAGTTGAAA-ATTTACG 1131
| |||| ||||||||||||||||||||||||||||| || |||| ||| ||| |||||||
Sbjct 1124 AGTTTGCGGTGGTGCAAAACAAGACGCTTACTTCCGTGCAGAGAGGTT-AAAGATTTACG 1182
Query 1132 ATTGGGCCTTGAAGGATTGTGCAAGGATAAGCCTCAATAGTGCTAAGCCTGTATGGAAAA 1191
||||||||||||| |||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1183 ATTGGGCCTTGAAAGATTGTGCAAGGTTAAACATCAATAGTGCTAAGCCTGTATGGAAAA 1242
Query 1192 CAGAGACCATGCCAATGTCACGTGTGATGAGTGATACTGTGATCCTCCCAAATGGAGAAA 1251
||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1243 CAGAGACCATGCCAACGTCACGTGTGATGAGTGATACTGTGATCCTTCCTAATGGAGAAA 1302
Query 1252 TTCTTATTATTAATGGTGCAAAACGTGGCTCCTCCGGTTGGCACTTAGCCAAAGACCCAA 1311
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1303 TTCTTATCATTAATGGTGCAAAACGTGGCTCCTCTGGTTGGCACTTAGCCAAAGAACCAA 1362
Query 1312 ATTTTGCTCCACTCTTGTACACACCTAACAAACCTTTAGGCAAACGTTTCAAAGAACTCG 1371
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1363 ATTTTGCTCCACTCTTGTACAAACCTAACAAACCTTTAGGCCAACGTTTCAAAGAACTCG 1422
Query 1372 CTCCTTCCACTATCCCTCGCGTGTACCATTCCATCGCAATCGCTCTTCCTGATGGTAAAG 1431
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 CTCCTTCCACTATCCCTCGTGTGTACCATTCCATCGCAATCGCTCTTCCTGATGGTAAAG 1482
Query 1432 TTCTTGTCGGTGGAAGCAACACCAACGACGGTTACCAATACAACGTTGAGTACCCAACCG 1491
|||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||
Sbjct 1483 TTCTCGTCGGTGGAAGCAACACCAACAACGGATACCAATTCAACGTTGAGTACCCAACCG 1542
Query 1492 AGCTCCGTATCGAGAAATTCTCACCACCTTATCTTGATCCAGCTCTTGCCAATATGAGAC 1551
| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1543 AACTCCGCATCGAGAAATTCTCACCACCTTACCTTGATCCAGCTCTAGCCAATATGAGAC 1602
Query 1552 CAAGAATCGTAAACACCGCGACACCAAAACAGATTAAGTATGGACAAATGTTTGACGTAA 1611
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 CAAGAATCGTAAACACCGCAACACCAAAACAGATTAAGTATGGACAAATGTTTGACGTAA 1662
Query 1612 AGATCGAGCTTAAACAACAAAACGTAGCAAAGGAGAATGTAATGGTGACAATGTTGGCAC 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 AGATCGAGCTTAAACAACAAAACGTAGCAAAGGAGAATGTAATGGTGACAATGTTGGCAC 1722
Query 1672 CATCATTTACTACACATAGTGTGTCGATGAACATGAGGTTGCTTATGTTGGGTATTAACA 1731
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1723 CATCATTTACTACACATAGTGTATCAATGAACATGAGGTTGCTTATGTTGGGTATTAACA 1782
Query 1732 ATGTCAAGAATGTTGGTGGCGATAATCATCAAATTCAAGCAGTTGCTCCTCCTAGTGGAA 1791
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1783 ATGTGAAGAATGTTGGTGGCGATAATCATCAAATCCAAGCCGTTGCTCCTCCTAGTGGAA 1842
Query 1792 AAGTTGCTCCTCCTGGTTATTATCTTCTCTTTGCCGTCTACAATGGTGTCCCTAGCGTTG 1851
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 AACTTGCTCCTCCTGGTTATTATCTTCTCTTTGCCGTCTACAATGGTGTCCCTAGCGTTG 1902
Query 1852 GAGAATGGATTCAGATCGTGTAATTTTGATATGCATATATATAT-AGTGATATTTTTGGA 1910
|||||||||||||||| || |||||||||||||||||||| ||| | | ||||||| ||
Sbjct 1903 GAGAATGGATTCAGATTGTCTAATTTTGATATGCATATAT-TATCAATT-TATTTTTTGA 1960
Query 1911 AACGAAACCTATA-A-CATGTTTGTAAGGCCAAttttttt-CTTTATACTTGTATGAATA 1967
||||||||||||| | ||||||||||||| ||||||||| |||||||||| ||| |||
Sbjct 1961 AACGAAACCTATATAACATGTTTGTAAGGTTAATTTTTTTTCTTTATACTTACATGTATA 2020
Query 1968 TATTCTTTGATT 1979
||||||||||||
Sbjct 2021 TATTCTTTGATT 2032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98041664385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5