BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475830
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67328.1 | Symbols: | other RNA | chr1:25213843-25215050 RE... 1869 0.0
AT1G67330.1 | Symbols: | Protein of unknown function (DUF579) ... 1853 0.0
> AT1G67328.1 | Symbols: | other RNA | chr1:25213843-25215050
REVERSE LENGTH=1208
Length=1208
Score = 1869 bits (1012), Expect = 0.0
Identities = 1148/1213 (95%), Gaps = 11/1213 (1%)
Strand=Plus/Minus
Query 1 TTTACTATTACCCTTTTaaaaaaaTTTCTCATTAAAATGTAAATAAACTACATTTGATCA 60
||||||||||||||||| |||| ||| ||||||||||| |||||||||| |||||||||
Sbjct 1208 TTTACTATTACCCTTTT-AAAACTTTTTTCATTAAAATGGAAATAAACTATATTTGATCA 1150
Query 61 GTTGAGATATAT-TCTTAAGAGAAATGAGTAAATTAGATTAAAAGAACAACGAGGATTGA 119
|||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1149 GTTGAGATCTATAT-TTAAGAGAAGTGAGTAAATTAGATTAAAAGAACAACGAGGATCGA 1091
Query 120 TCAATCATACGTGCCATTAATGATTGAGACGGACGTGCTTCACATTCGTTGACTCTACCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TCAATCATACGTGCCATTAATGATTGAGACGGACGTGCTTCACATTCGTTGACTCTACCA 1031
Query 180 TTAGCATTATTTCTCCACTTTCTCATCCGATCTCTTCACCTTGTATAACCATATACTCAT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TTAGCATTATTTCTCCACTTTCTCATCCGATCTCTTCACCTTGTATAACCATATACTCAT 971
Query 240 CAGCCTCTCTCGCCAAACCCAACAAAAA-CAAATCAAACATGATTCAAGACAAGTCGAAA 298
|||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |||
Sbjct 970 CAGCCTCTCTCGCCAAACCC--CAAAAAGCAAACCAAACATGATTCAAGACAAGTCTAAA 913
Query 299 GGTGCAAAGCAAGCCCTTCTAGAGCGGCCATGGTTCCTCG-TGGTGGCTCTAGCTGGTCT 357
|||||||||||| | ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 912 GGTGCAAAGCAAACGCTTCTAGAGCGGCCATGGTTCCTCGCTG-TGGCTCTAGCTGGTCT 854
Query 358 TTTAGGTGGCGCCATGCTCATCACAAGCTTCATCCGAGCTACGGACAACACTTTGTCACT 417
| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 853 TATAGGTGGCGCAATGCTCATCACAAGCTTCATCCGAGCTACGGACAACACCTTGTCACT 794
Query 418 ATGCTCGACAGCTAAGAACACGGCTGCGTCCATAGCCGAATATTCAGCCACCCCAATTCA 477
||||| || ||||||||||| |||||||| |||||| |||| ||||||||||||| ||
Sbjct 793 CTGCTCCACGGCTAAGAACACAGCTGCGTCTATAGCCAAATACACAGCCACCCCAATCCA 734
Query 478 ACTACAATCCATCGTTCACTATGCCACCTCACACACCGTCCCTCAACAATCTTTCGAGGA 537
||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 733 ACTCCAATCCATCGTCCACTACGCCACTTCACACACCGTCCCTCAACAATCTTTCGAGGA 674
Query 538 GATCTCGATCTCTTTAAACGTCCTCAAGGAACGTCTCCCTTGTAACTTCCTAGTCTTTGG 597
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 673 GATCTCGATCTCTTTAAACGTCCTCAAGGAGCGTCTCCCTTGTAACTTTCTAGTCTTTGG 614
Query 598 CCTAGGCCGTGATTCCCTCATGTGGGCCTCCCTCAATCCAGGTGGCACTACTGTGTTCCT 657
||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 613 CCTCGGCCGCGACTCCCTCATGTGGGCCTCCCTCAATCCAGGTGGCACAACTGTGTTCTT 554
Query 658 GGAGGAGGATCCTGAGTGGATAGAGGCCGTCCTCAAGGATGCTCCATCCCTCAGGGCCCA 717
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 553 GGAAGAGGATCCTGAGTGGATAGAGGCCGTCCTCAAGGACGCCCCATCCCTCAGGGCCCA 494
Query 718 CCATGTTCAGTACCGGACCCACCTTTCGGAGGCCGGCCGCCTTCTCTCGACTTACAAGAA 777
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 493 CCATGTTCAGTACCGGACCCACCTTTCTGAGGCCGGCCGCCTTCTCTCGACTTACAAGAA 434
Query 778 CGAACCCATGTGTTTACCAGCTAAAGCTTTCCCGATCCGCTACAACGAAAAGTGTCCCTT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CGAACCCATGTGTTTACCAGCTAAAGCTTTCCCGATCCGCTACAACGAAAAGTGTCCCTT 374
Query 838 GGCGTTGACTTCGCTTCCTGATGAGTTCTATGATACCGAGTGGGATCTGATCATGGTGGA 897
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GGCGTTGACTTCTCTCCCTGATGAGTTCTATGATACCGAGTGGGATCTGATCATGGTGGA 314
Query 898 CGCACCAAAGGGGTACTTCCCGGTGGCGCCCGGAAGGATGGCGGCGATATTTTCCTCGGC 957
||||||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 313 CGCACCAAAAGGGTACTTCCCAGAGGCGCCAGGAAGGATGGCGGCGATATTTTCCTCGGC 254
Query 958 CGTCATGGCACGTAACCGGAAAGGTGATGGCACGACACACGTCTTCCTACATGACGTTAA 1017
| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 253 CATCATGGCACGTAACCGGAAAGGTGATGGCACGACTCACGTCTTCCTTCATGACGTTAA 194
Query 1018 CCGCTATGTGGAGAA-GACTTTTGCCAATGAGTTCCTTTGTGAGAAGTATAAGGTCAACT 1076
|||| | |||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CCGCAAAGTGGAGAACG-CTTTTGCCAATGAGTTCCTTTGTGAGAAGTATAAGGTCAACT 135
Query 1077 CCGCAGGTAGGCTCTGGCACTTCGAGATACCTAACGCTGCTAACATGACCGACCAGCCTG 1136
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 134 CCGTAGGTAGGCTCTGGCACTTCGAGATACCTAACGCCGCTAACATGACCGACCAGCCTG 75
Query 1137 GTGACCGGTTTTGCTAGAGTGCGCCAA-TATTCGTTCTTCGTTACTTCTTTTAATTGGAA 1195
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 74 GTGACCGGTTTTGCTAGAGTGCGCCAAATATTCGTTCTTCGATACTTCTTTTAATTGGAG 15
Query 1196 CACCGCATAGTTC 1208
|||||||||||||
Sbjct 14 CACCGCATAGTTC 2
> AT1G67330.1 | Symbols: | Protein of unknown function (DUF579)
| chr1:25213852-25215174 FORWARD LENGTH=1323
Length=1323
Score = 1853 bits (1003), Expect = 0.0
Identities = 1139/1204 (95%), Gaps = 11/1204 (1%)
Strand=Plus/Plus
Query 10 ACCCTTTTaaaaaaaTTTCTCATTAAAATGTAAATAAACTACATTTGATCAGTTGAGATA 69
|||||||| |||| ||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 1 ACCCTTTT-AAAACTTTTTTCATTAAAATGGAAATAAACTATATTTGATCAGTTGAGATC 59
Query 70 TAT-TCTTAAGAGAAATGAGTAAATTAGATTAAAAGAACAACGAGGATTGATCAATCATA 128
||| | ||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 TATAT-TTAAGAGAAGTGAGTAAATTAGATTAAAAGAACAACGAGGATCGATCAATCATA 118
Query 129 CGTGCCATTAATGATTGAGACGGACGTGCTTCACATTCGTTGACTCTACCATTAGCATTA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGTGCCATTAATGATTGAGACGGACGTGCTTCACATTCGTTGACTCTACCATTAGCATTA 178
Query 189 TTTCTCCACTTTCTCATCCGATCTCTTCACCTTGTATAACCATATACTCATCAGCCTCTC 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTTCTCCACTTTCTCATCCGATCTCTTCACCTTGTATAACCATATACTCATCAGCCTCTC 238
Query 249 TCGCCAAACCCAACAAAAA-CAAATCAAACATGATTCAAGACAAGTCGAAAGGTGCAAAG 307
||||||||||| |||||| |||| |||||||||||||||||||||| ||||||||||||
Sbjct 239 TCGCCAAACCC--CAAAAAGCAAACCAAACATGATTCAAGACAAGTCTAAAGGTGCAAAG 296
Query 308 CAAGCCCTTCTAGAGCGGCCATGGTTCCTCG-TGGTGGCTCTAGCTGGTCTTTTAGGTGG 366
||| | ||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 297 CAAACGCTTCTAGAGCGGCCATGGTTCCTCGCTG-TGGCTCTAGCTGGTCTTATAGGTGG 355
Query 367 CGCCATGCTCATCACAAGCTTCATCCGAGCTACGGACAACACTTTGTCACTATGCTCGAC 426
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 356 CGCAATGCTCATCACAAGCTTCATCCGAGCTACGGACAACACCTTGTCACTCTGCTCCAC 415
Query 427 AGCTAAGAACACGGCTGCGTCCATAGCCGAATATTCAGCCACCCCAATTCAACTACAATC 486
||||||||||| |||||||| |||||| |||| ||||||||||||| ||||| |||||
Sbjct 416 GGCTAAGAACACAGCTGCGTCTATAGCCAAATACACAGCCACCCCAATCCAACTCCAATC 475
Query 487 CATCGTTCACTATGCCACCTCACACACCGTCCCTCAACAATCTTTCGAGGAGATCTCGAT 546
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CATCGTCCACTACGCCACTTCACACACCGTCCCTCAACAATCTTTCGAGGAGATCTCGAT 535
Query 547 CTCTTTAAACGTCCTCAAGGAACGTCTCCCTTGTAACTTCCTAGTCTTTGGCCTAGGCCG 606
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 536 CTCTTTAAACGTCCTCAAGGAGCGTCTCCCTTGTAACTTTCTAGTCTTTGGCCTCGGCCG 595
Query 607 TGATTCCCTCATGTGGGCCTCCCTCAATCCAGGTGGCACTACTGTGTTCCTGGAGGAGGA 666
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct 596 CGACTCCCTCATGTGGGCCTCCCTCAATCCAGGTGGCACAACTGTGTTCTTGGAAGAGGA 655
Query 667 TCCTGAGTGGATAGAGGCCGTCCTCAAGGATGCTCCATCCCTCAGGGCCCACCATGTTCA 726
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 656 TCCTGAGTGGATAGAGGCCGTCCTCAAGGACGCCCCATCCCTCAGGGCCCACCATGTTCA 715
Query 727 GTACCGGACCCACCTTTCGGAGGCCGGCCGCCTTCTCTCGACTTACAAGAACGAACCCAT 786
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GTACCGGACCCACCTTTCTGAGGCCGGCCGCCTTCTCTCGACTTACAAGAACGAACCCAT 775
Query 787 GTGTTTACCAGCTAAAGCTTTCCCGATCCGCTACAACGAAAAGTGTCCCTTGGCGTTGAC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTGTTTACCAGCTAAAGCTTTCCCGATCCGCTACAACGAAAAGTGTCCCTTGGCGTTGAC 835
Query 847 TTCGCTTCCTGATGAGTTCTATGATACCGAGTGGGATCTGATCATGGTGGACGCACCAAA 906
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTCTCTCCCTGATGAGTTCTATGATACCGAGTGGGATCTGATCATGGTGGACGCACCAAA 895
Query 907 GGGGTACTTCCCGGTGGCGCCCGGAAGGATGGCGGCGATATTTTCCTCGGCCGTCATGGC 966
||||||||||| | |||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 896 AGGGTACTTCCCAGAGGCGCCAGGAAGGATGGCGGCGATATTTTCCTCGGCCATCATGGC 955
Query 967 ACGTAACCGGAAAGGTGATGGCACGACACACGTCTTCCTACATGACGTTAACCGCTATGT 1026
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||
Sbjct 956 ACGTAACCGGAAAGGTGATGGCACGACTCACGTCTTCCTTCATGACGTTAACCGCAAAGT 1015
Query 1027 GGAGAA-GACTTTTGCCAATGAGTTCCTTTGTGAGAAGTATAAGGTCAACTCCGCAGGTA 1085
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1016 GGAGAACG-CTTTTGCCAATGAGTTCCTTTGTGAGAAGTATAAGGTCAACTCCGTAGGTA 1074
Query 1086 GGCTCTGGCACTTCGAGATACCTAACGCTGCTAACATGACCGACCAGCCTGGTGACCGGT 1145
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1075 GGCTCTGGCACTTCGAGATACCTAACGCCGCTAACATGACCGACCAGCCTGGTGACCGGT 1134
Query 1146 TTTGCTAGAGTGCGCCAA-TATTCGTTCTTCGTTACTTCTTTTAATTGGAACACCGCATA 1204
|||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1135 TTTGCTAGAGTGCGCCAAATATTCGTTCTTCGATACTTCTTTTAATTGGAGCACCGCATA 1194
Query 1205 GTTC 1208
||||
Sbjct 1195 GTTC 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59337044190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5