BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475833
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67350.1 | Symbols: | unknown protein; Has 2 Blast hits to ... 861 0.0
> AT1G67350.1 | Symbols: | unknown protein; Has 2 Blast hits to
2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:25235271-25236878 FORWARD LENGTH=862
Length=862
Score = 861 bits (466), Expect = 0.0
Identities = 578/629 (92%), Gaps = 20/629 (3%)
Strand=Plus/Plus
Query 1 CACTCGCTCTGCGCTGCGTTC-AAT-CAGAACTCTCTGACCATCCCAAAGCAAAAGCTTC 58
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 182 CACTCGCTCTGCGCTGCGTTCGAATCCAGAACTCTCTGACCATCCCAAAGCAAAAGCTTC 241
Query 59 AGCGATCTTCATCGTCTGGTTTCGAACCTTAAGGT-ATATATGGGTTTCATAATGGAATT 117
| |||||||| |||| |||| ||||| |||| || | ||||||||||||||||||||||
Sbjct 242 ACCGATCTTCCTCGTTTGGTCTCGAATATTAA-GTGAAATATGGGTTTCATAATGGAATT 300
Query 118 TGCGGAGAACTTGGTGCTAAGGTTAATGGAGAATCCAGAGGAGA-GAGACAGGAAAGCGA 176
|||||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||
Sbjct 301 CGCGGAGAATTTGGTGTTAAGGTTAATGGAGAATCCAGAGGA-ACGAGACAGGAAAGCGA 359
Query 177 GGGAACACATATATGAGATGCATGAGAGGTGCAAGAAGATTAAGGAGATGTGGGCATTAC 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 GGGAACACATATATGAGATGCATGAGAGGTGCAAGAAGATTAAGGAGATGTGGGCATTGC 419
Query 237 CTATTCGTCCTTATGGATTTTGGACTTTTGAGCGGCACAATGCTCAGCTTCGTTGGGATC 296
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 420 CTATTCGTCCTTATGGATTCTGGACATTTGAGCGTCACAATGCTCAGCTTCGTTGGGATC 479
Query 297 CTCAGATCAGTCAGGTCGCTGGTCGAAGGGATCCTTATGATGATCTTCTTGAGGACAACT 356
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 CTCAGATCAGTCAGGTTGCTGGTCGAAGGGATCCTTATGATGATCTTCTCGAGGACAACT 539
Query 357 ACACTCCTCCTTCTTCCTC------ATCTTCAAACTAATCAACCAATGAAGGAAGATGT- 409
||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||
Sbjct 540 ACACTCCTCCTTCTTCCTCTTCCTCATCTTCAGACTAATCAAACAATGAAAGAAGATGTG 599
Query 410 TCTATGCTGTCTGGATGGATGCATGTCTGTTTTCAAGCAATTTTTCTCGGAATT-GTACT 468
| |||||||||||||||||||||||| ||||||||||| |||||||||||| || || |
Sbjct 600 T-TATGCTGTCTGGATGGATGCATGTTTGTTTTCAAGCTATTTTTCTCGGAGTTTGT-C- 656
Query 469 CTCTTCTGTTTCTATTTGTTCTTAAGGTGTCTGGGAGCTTGGTATCAAGACTCAAATAAT 528
| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 657 CGCTTCTGTTTCTATTTGTTCTTAAGGTGTCTGGGAGCTTGGTA-CAAAACTCAAATAAT 715
Query 529 AACTCCACACttttttttATGAACGAGAAAGAAATAATGCTCATTGGTTATTAGTAAAGT 588
|||| || |||| ||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 716 AACTTCAAACTTGTTT--ACGAACGAGAAAGAAATAATGCTCATTGGTTCTTAGTAAAGT 773
Query 589 TGTTTTGATTCCCCATCTCCTCCATCTTT 617
||||||||||| ||||||||||||| |||
Sbjct 774 TGTTTTGATTCTCCATCTCCTCCATTTTT 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29738615024
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5