BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475841
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67430.1 | Symbols: | Ribosomal protein L22p/L17e family pr... 1072 0.0
> AT1G67430.1 | Symbols: | Ribosomal protein L22p/L17e family
protein | chr1:25262159-25263789 FORWARD LENGTH=740
Length=740
Score = 1072 bits (580), Expect = 0.0
Identities = 663/700 (95%), Gaps = 17/700 (2%)
Strand=Plus/Plus
Query 1 TCTTCCCAAATTTCACAACTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATGGTGAAGT 60
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTCACAAATCTCACATCTCTTCTGCAGCCGATTCTTCTATTAGCCGCCATGGTGAAGT 60
Query 61 ACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGGCTAGAGGATCCGATCTTAGGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTCGCAAGAACCCGACAATCAGACCAAGTCTTGCAAGGCTAGAGGATCCGATCTTAGGG 120
Query 121 TTCACTTCAAGAACACTAGGGAAACAGCGCACGCCATCAGGAAGCTACCATTGATCAAGG 180
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TTCACTTCAAGAATACTAGGGAAACAGCGCACGCAATCAGGAAGCTACCATTGATCAAGG 180
Query 181 CGAAGAGGTACCTTGAGGATGTGATAGCTCACAAGCAAGCAATTCCCTTCACACGTTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGAAGAGGTACCTTGAGGATGTGATAGCTCACAAGCAAGCAATTCCCTTCACACGTTTCT 240
Query 241 GCAGAGGTGTTGGGAGAACTGCTCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCAGAGGTGTTGGGAGAACTGCTCAAGCTAAGAACAGGCACTCTAATGGTCAAGGACGTT 300
Query 301 GGCCTGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTG 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGCCAGCCAAGTCTGCTCAGTTTGTTCTTGATTTGCTCAAGAACGCTGAGAGCAATGCTG 360
Query 361 AGGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAACCAGGCCG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAACCAGGCCG 420
Query 421 CAAAGCAAAGGAGAAGGACTTACCGTGCTCACGGAAGAATCAACCCTTACATGTCCAACC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAAAGCAAAGGAGAAGGACTTACCGTGCTCACGGAAGAATCAACCCTTACATGTCCAACC 480
Query 481 CATGTCACATTGAGTTGATTTTGTCAGAGAAGGAAGAACCTGTCAAGAAAGAGCCGGAGA 540
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 481 CATGCCACATTGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGCCGGAGA 540
Query 541 CTCAGTTGGCTGCCAAGTCCAAGAAATCTGCAGCTTAAGCTTTCTTTGTTT-T----AT- 594
|||||||||||||||||||||||||||| |||||||||||||||||| ||| | ||
Sbjct 541 CTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTCTTTCTTTATTTTCATG 600
Query 595 TC--TTGAAT-C---A--GA--TTTTGTTCGCTTTTT-CTTTAGTTCAAATCGTTTTGTA 643
|| ||| | | | || |||||||| |||||| |||||| || ||||||||||||
Sbjct 601 TCCCTTGTGTTCTTGAACGAGATTTTGTTCTCTTTTTTCTTTAGCTCGAATCGTTTTGTA 660
Query 644 AGACCATGGATAGATTTTTCTTGGAGATTTTCGTTCAATG 683
|||| |||||||||||| ||||||| |||||||||| |||
Sbjct 661 AGACAATGGATAGATTTATCTTGGAAATTTTCGTTCTATG 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33054068726
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5