BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475851
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44160.1 | Symbols: | HSP40/DnaJ peptide-binding protein | ... 580 8e-165
AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase ... 82.4 1e-14
> AT1G44160.1 | Symbols: | HSP40/DnaJ peptide-binding protein
| chr1:16794829-16796450 FORWARD LENGTH=1451
Length=1451
Score = 580 bits (314), Expect = 8e-165
Identities = 357/376 (95%), Gaps = 9/376 (2%)
Strand=Plus/Plus
Query 773 AAAGAGCATGAGGTGTTCAAAAGAGAAGGAGATGACCTCGAAATGGCGGGCGGTGGAAGT 832
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 972 AAAGAGCATGAAGTGTTTAAAAGAGAAGGAGATGACCTCGAAAT----GGCGGTGGAAGT 1027
Query 833 CTCTCTACTCGAAGCTTTAACGGGATGCGAGCTCTCTATTGC-TTATCTTGATGGTGATA 891
||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |
Sbjct 1028 CTCTCTACTCGAAGCTTTAACGGGATGCGAGCTCTCTGTTGCTTTA-CTTGATGGTGACA 1086
Query 892 ATATGAGTTTGAGGATAGAAGATGTTATTCACCCTGGATATGTTACAGTGGTTCAAGGCA 951
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1087 ATATGAGGTTGAGGATAGAAGATGTTATTCACCCTGGATATGTTACAGTGGTTCAAGGAA 1146
Query 952 AAGGAATGCCAAATCTAAAGGAGAAAGGGAAGAGAGGAGATTTGAGAGTTCGGTTTCGGA 1011
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 AAGGAATGCCAAATCTTAAGGAGAAAGGGAAGAGAGGAGATTTGAGAGTTCGGTTTCGGA 1206
Query 1012 CTAAGTTCCCGCAACATCTTACAGATGAACAAAGGGCAGAGATTCATAGCATTCTTCAAG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 CTAAGTTCCCGCAACATCTTACAGATGAACAAAGGGCAGAGATTCATAGCATTCTTCAAG 1266
Query 1072 ACTCTTCTTGATTTGTTTGCTTA-AGACTTTCTTTCCCTTTATAGGGGAGCTTTTACAAC 1130
||||||||||||||||| ||| | ||| |||||||||| ||||||||||||||| |||||
Sbjct 1267 ACTCTTCTTGATTTGTT-GCT-ACAGATTTTCTTTCCCATTATAGGGGAGCTTTAACAAC 1324
Query 1131 ATGGTTTAGATAAAAA 1146
||||||||||||||||
Sbjct 1325 ATGGTTTAGATAAAAA 1340
Score = 527 bits (285), Expect = 1e-148
Identities = 347/377 (92%), Gaps = 4/377 (1%)
Strand=Plus/Plus
Query 392 CACGGCCACCGG-GGCCACGACGAATCCAACATTCCGGAGTTTATCGTTTATAGGGAGGA 450
||| |||| ||| | || |||||||||| || || |||||||||||||||||||||||||
Sbjct 542 CACAGCCA-CGGCGACCTCGACGAATCCGACGTTGCGGAGTTTATCGTTTATAGGGAGGA 600
Query 451 GCAAAAGCAGCAGCAATAGGATGACGGAATCCGGTGGATTTATGCCGACACTTATGAGAT 510
|||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 601 GCAAAAGCAGTAGCAACAGGATGACGGAATCTGGTGGATTTATGCCTACACTTATGAGAT 660
Query 511 CAACAACCACGGTTCCAAGAAGCTTTGCAAACCCGATTTTGTATTCGAGTTCCTCAGCCA 570
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 661 CGACAACCACGGTTCCAAGAAGCTTTGCAAATCCGATTTTGTATTCGAGTTCCTCTGCTA 720
Query 571 AAGTGGCTAAACCTTCTCCAACAGAGAAGAAACTACGCTGTACGCTCGAGGAGCTATGCA 630
|||||||||||||||||||||| |||||||||||| | || || ||||| ||||||||||
Sbjct 721 AAGTGGCTAAACCTTCTCCAACGGAGAAGAAACTAAGATGCACTCTCGAAGAGCTATGCA 780
Query 631 ACGGATGTACCAAGAAGATCAAGATCACA-AGAGATGTTATTACTAGCTCAGGGCAAATG 689
||||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||| |
Sbjct 781 ACGGATGTACCAAGAAGATCAAGATCA-AGAGAGATGTTATTACTAGCTTAGGGGAAAAG 839
Query 690 TGCGAGGAGGAAGAGACGGTGGAAATAAAAGTGAAACCGGGATGGAAAGGAGGGACGAAA 749
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 840 TGCGAGGAGGAAGAGATGGTGGAAATAAAAGTTAAACCGGGATGGAAAGGAGGTACGAAA 899
Query 750 GTAACATTCGAAGGCAA 766
|||||||||||||||||
Sbjct 900 GTAACATTCGAAGGCAA 916
Score = 263 bits (142), Expect = 3e-69
Identities = 165/175 (94%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 108 CTTTCTCTTTCTCTATCTCCGCCGTGAATGGCAACACAAGGGATGGCTCAGCCGTCGGCG 167
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 CTTTCTCTTTCTCTATCTCCGCCGTGAATGGCAACACAAGGGATGGCTCAGCCTTCGGCG 236
Query 168 AAGAAAAGAAGCTTCCTCCTCCGTGATATCTTCAAACTTTGCCGATCAATCTCAAGGGTT 227
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 237 AAGAAAAGAAGCTTCCTCCTCCGTGATCTCTTCAAACTTTGCCGATCAATCTCAAGGGTT 296
Query 228 TTTCCTCGTGACAAA-CCTAAACATCATCATCATAAGGCTAAACACGAAACCAAA 281
|| |||||||||||| || |||||||||||| | | |||||||||||| || |||
Sbjct 297 TTGCCTCGTGACAAAACC-AAACATCATCAT-A-A-GGCTAAACACGACAC-AAA 346
Score = 183 bits (99), Expect = 3e-45
Identities = 107/110 (97%), Gaps = 3/110 (3%)
Strand=Plus/Plus
Query 1 AACTTCTAATAATTAGATTATT--TAGATGAGAGCGTTTCTTATCTTGATTCTTTGATCT 58
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AACTTCTAATAATTAGATTATTAGTAGATGAGAGCGTTTCTTATCTTGATTCTTTGATCT 60
Query 59 GTGTTCCTATCTGTTTCCGTCAATGGCAAAAG-TTTGGTCTAAAAAAGGA 107
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GTGTTCCTATCTGTTTCCGTCAATGGCAAAAGATTTGGTCTAAAAAAGGA 110
Score = 130 bits (70), Expect = 3e-29
Identities = 74/76 (97%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 308 TAATAATAATAAGGTGGAAGGTGTGAGTCTTTGTAAGGTTCGTAGCTATAGATTTGACAA 367
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 425 TAAAAATAATAAGGTGGAAGGTGTGAGTCTTTGTAAGGTTCGTAGTTATAGATTTGACAA 484
Query 368 CACCAATACCAATTTC 383
||||||||||||||||
Sbjct 485 CACCAATACCAATTTC 500
Score = 117 bits (63), Expect = 3e-25
Identities = 70/73 (96%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 1147 TTTGTAAACAACCAAGTTGAAATGAAGAAACCGGTTTCCATAATCAACCGAAAA-CTTTT 1205
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1379 TTTGTAAACAACCAAGTTGGAATGAAGAAACCGGTTTCCATAATCAACCGAAAATCTTTT 1438
Query 1206 ATTTATCGACTTC 1218
||||||| |||||
Sbjct 1439 ATTTATCAACTTC 1451
> AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase
3H1 | chr1:16796400-16800321 REVERSE LENGTH=1683
Length=1683
Score = 82.4 bits (44), Expect = 1e-14
Identities = 49/51 (96%), Gaps = 1/51 (2%)
Strand=Plus/Minus
Query 1169 TGAAGAAACCGGTTTCCATAATCAACCGAAAA-CTTTTATTTATCGACTTC 1218
|||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1683 TGAAGAAACCGGTTTCCATAATCAACCGAAAATCTTTTATTTATCAACTTC 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5