BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475851 Length=1218 Score E Sequences producing significant alignments: (Bits) Value AT1G44160.1 | Symbols: | HSP40/DnaJ peptide-binding protein | ... 580 8e-165 AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase ... 82.4 1e-14 > AT1G44160.1 | Symbols: | HSP40/DnaJ peptide-binding protein | chr1:16794829-16796450 FORWARD LENGTH=1451 Length=1451 Score = 580 bits (314), Expect = 8e-165 Identities = 357/376 (95%), Gaps = 9/376 (2%) Strand=Plus/Plus Query 773 AAAGAGCATGAGGTGTTCAAAAGAGAAGGAGATGACCTCGAAATGGCGGGCGGTGGAAGT 832 ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 972 AAAGAGCATGAAGTGTTTAAAAGAGAAGGAGATGACCTCGAAAT----GGCGGTGGAAGT 1027 Query 833 CTCTCTACTCGAAGCTTTAACGGGATGCGAGCTCTCTATTGC-TTATCTTGATGGTGATA 891 ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| | Sbjct 1028 CTCTCTACTCGAAGCTTTAACGGGATGCGAGCTCTCTGTTGCTTTA-CTTGATGGTGACA 1086 Query 892 ATATGAGTTTGAGGATAGAAGATGTTATTCACCCTGGATATGTTACAGTGGTTCAAGGCA 951 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1087 ATATGAGGTTGAGGATAGAAGATGTTATTCACCCTGGATATGTTACAGTGGTTCAAGGAA 1146 Query 952 AAGGAATGCCAAATCTAAAGGAGAAAGGGAAGAGAGGAGATTTGAGAGTTCGGTTTCGGA 1011 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1147 AAGGAATGCCAAATCTTAAGGAGAAAGGGAAGAGAGGAGATTTGAGAGTTCGGTTTCGGA 1206 Query 1012 CTAAGTTCCCGCAACATCTTACAGATGAACAAAGGGCAGAGATTCATAGCATTCTTCAAG 1071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1207 CTAAGTTCCCGCAACATCTTACAGATGAACAAAGGGCAGAGATTCATAGCATTCTTCAAG 1266 Query 1072 ACTCTTCTTGATTTGTTTGCTTA-AGACTTTCTTTCCCTTTATAGGGGAGCTTTTACAAC 1130 ||||||||||||||||| ||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 1267 ACTCTTCTTGATTTGTT-GCT-ACAGATTTTCTTTCCCATTATAGGGGAGCTTTAACAAC 1324 Query 1131 ATGGTTTAGATAAAAA 1146 |||||||||||||||| Sbjct 1325 ATGGTTTAGATAAAAA 1340 Score = 527 bits (285), Expect = 1e-148 Identities = 347/377 (92%), Gaps = 4/377 (1%) Strand=Plus/Plus Query 392 CACGGCCACCGG-GGCCACGACGAATCCAACATTCCGGAGTTTATCGTTTATAGGGAGGA 450 ||| |||| ||| | || |||||||||| || || ||||||||||||||||||||||||| Sbjct 542 CACAGCCA-CGGCGACCTCGACGAATCCGACGTTGCGGAGTTTATCGTTTATAGGGAGGA 600 Query 451 GCAAAAGCAGCAGCAATAGGATGACGGAATCCGGTGGATTTATGCCGACACTTATGAGAT 510 |||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||| Sbjct 601 GCAAAAGCAGTAGCAACAGGATGACGGAATCTGGTGGATTTATGCCTACACTTATGAGAT 660 Query 511 CAACAACCACGGTTCCAAGAAGCTTTGCAAACCCGATTTTGTATTCGAGTTCCTCAGCCA 570 | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | Sbjct 661 CGACAACCACGGTTCCAAGAAGCTTTGCAAATCCGATTTTGTATTCGAGTTCCTCTGCTA 720 Query 571 AAGTGGCTAAACCTTCTCCAACAGAGAAGAAACTACGCTGTACGCTCGAGGAGCTATGCA 630 |||||||||||||||||||||| |||||||||||| | || || ||||| |||||||||| Sbjct 721 AAGTGGCTAAACCTTCTCCAACGGAGAAGAAACTAAGATGCACTCTCGAAGAGCTATGCA 780 Query 631 ACGGATGTACCAAGAAGATCAAGATCACA-AGAGATGTTATTACTAGCTCAGGGCAAATG 689 ||||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||| | Sbjct 781 ACGGATGTACCAAGAAGATCAAGATCA-AGAGAGATGTTATTACTAGCTTAGGGGAAAAG 839 Query 690 TGCGAGGAGGAAGAGACGGTGGAAATAAAAGTGAAACCGGGATGGAAAGGAGGGACGAAA 749 |||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| Sbjct 840 TGCGAGGAGGAAGAGATGGTGGAAATAAAAGTTAAACCGGGATGGAAAGGAGGTACGAAA 899 Query 750 GTAACATTCGAAGGCAA 766 ||||||||||||||||| Sbjct 900 GTAACATTCGAAGGCAA 916 Score = 263 bits (142), Expect = 3e-69 Identities = 165/175 (94%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 108 CTTTCTCTTTCTCTATCTCCGCCGTGAATGGCAACACAAGGGATGGCTCAGCCGTCGGCG 167 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 177 CTTTCTCTTTCTCTATCTCCGCCGTGAATGGCAACACAAGGGATGGCTCAGCCTTCGGCG 236 Query 168 AAGAAAAGAAGCTTCCTCCTCCGTGATATCTTCAAACTTTGCCGATCAATCTCAAGGGTT 227 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 237 AAGAAAAGAAGCTTCCTCCTCCGTGATCTCTTCAAACTTTGCCGATCAATCTCAAGGGTT 296 Query 228 TTTCCTCGTGACAAA-CCTAAACATCATCATCATAAGGCTAAACACGAAACCAAA 281 || |||||||||||| || |||||||||||| | | |||||||||||| || ||| Sbjct 297 TTGCCTCGTGACAAAACC-AAACATCATCAT-A-A-GGCTAAACACGACAC-AAA 346 Score = 183 bits (99), Expect = 3e-45 Identities = 107/110 (97%), Gaps = 3/110 (3%) Strand=Plus/Plus Query 1 AACTTCTAATAATTAGATTATT--TAGATGAGAGCGTTTCTTATCTTGATTCTTTGATCT 58 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 AACTTCTAATAATTAGATTATTAGTAGATGAGAGCGTTTCTTATCTTGATTCTTTGATCT 60 Query 59 GTGTTCCTATCTGTTTCCGTCAATGGCAAAAG-TTTGGTCTAAAAAAGGA 107 |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 GTGTTCCTATCTGTTTCCGTCAATGGCAAAAGATTTGGTCTAAAAAAGGA 110 Score = 130 bits (70), Expect = 3e-29 Identities = 74/76 (97%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 308 TAATAATAATAAGGTGGAAGGTGTGAGTCTTTGTAAGGTTCGTAGCTATAGATTTGACAA 367 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 425 TAAAAATAATAAGGTGGAAGGTGTGAGTCTTTGTAAGGTTCGTAGTTATAGATTTGACAA 484 Query 368 CACCAATACCAATTTC 383 |||||||||||||||| Sbjct 485 CACCAATACCAATTTC 500 Score = 117 bits (63), Expect = 3e-25 Identities = 70/73 (96%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 1147 TTTGTAAACAACCAAGTTGAAATGAAGAAACCGGTTTCCATAATCAACCGAAAA-CTTTT 1205 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 1379 TTTGTAAACAACCAAGTTGGAATGAAGAAACCGGTTTCCATAATCAACCGAAAATCTTTT 1438 Query 1206 ATTTATCGACTTC 1218 ||||||| ||||| Sbjct 1439 ATTTATCAACTTC 1451 > AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase 3H1 | chr1:16796400-16800321 REVERSE LENGTH=1683 Length=1683 Score = 82.4 bits (44), Expect = 1e-14 Identities = 49/51 (96%), Gaps = 1/51 (2%) Strand=Plus/Minus Query 1169 TGAAGAAACCGGTTTCCATAATCAACCGAAAA-CTTTTATTTATCGACTTC 1218 |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1683 TGAAGAAACCGGTTTCCATAATCAACCGAAAATCTTTTATTTATCAACTTC 1633 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59839049640 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5