BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475854
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase ... 2213 0.0
> AT1G44170.1 | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase
3H1 | chr1:16796400-16800321 REVERSE LENGTH=1683
Length=1683
Score = 2213 bits (1198), Expect = 0.0
Identities = 1391/1485 (94%), Gaps = 10/1485 (1%)
Strand=Plus/Plus
Query 119 AAGAGAAATTGAAGAATGGCGGCGAAGAAGATGTTTGGAGCGGCGGATGCGAGTATTTTG 178
|||||| ||||| ||||||| ||||||||| | |||||| ||||||| ||||||| ||||
Sbjct 50 AAGAGATATTGAGGAATGGCTGCGAAGAAGGTTTTTGGATCGGCGGAAGCGAGTAATTTG 109
Query 179 GTGACGGATCTTCGTCGGAGTTTTGATGATGGTGTGACTCGTGGTTATGAATGGAGAGTG 238
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 110 GTGACGGAGCTTCGTCGGAGTTTTGATGATGGTGTGACACGTGGTTATGAATGGAGAGTG 169
Query 239 ACTCAGCTTAAGAAACTTTTGATTATTTGTGATAATCATGAGCCTGAGATCGTCGCGGCT 298
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 170 ACTCAGCTTAAGAAACTGATGATTATTTGTGATAATCATGAGCCTGAGATCGTCGCGGCT 229
Query 299 CTTCGCGACGATCTTGGGAAACCTGAGCTTGAATCTTCTGTTTATGAGGTATCTCTATTG 358
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct 230 CTTCGCGATGATCTTGGTAAGCCTGAGCTTGAATCTTCTGTTTATGAGGTATCTCTACTG 289
Query 359 AGAAACTCTATCAAGTTAGCTCTTAAGCAGCTAAAGAACTGGATGGCGCCGGAGAAGGCC 418
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
Sbjct 290 AGAAACTCTATCAAGTTGGCTCTTAAGCAGCTAAAGAACTGGATGGCTCCGGAGAAGG-C 348
Query 419 AAA-ACTTCTCTAACAACGTTTCCTGCATCGGCTGAGATTGTGTCTGAGCCTCTTGGTGT 477
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 349 AAAGACTTCTCTAACAACGTTTCCTGCATCCGCGGAGATTGTGTCTGAGCCTCTTGGTGT 408
Query 478 TGTGTTAGTTATCTCGGCTTGGAACTATCCCTTCT-TGTTGTCTATTGATCCAGTTATTG 536
|||| |||| |||||||||||||||||| |||| | |||||||||||||||| |||||||
Sbjct 409 TGTGCTAGTGATCTCGGCTTGGAACTAT-CCTTTTCTGTTGTCTATTGATCCTGTTATTG 467
Query 537 GTGCGATTTCTGCTGGGAATGCTGTTGTCTTGAAGCCATCCGAATTGGCTCCAGCTTCGT 596
|||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 468 GTGCAATTTCTGCTGGGAATGCTGTTGTTTTAAAGCCATCAGAATTGGCTCCAGCTTCGT 527
Query 597 CTGCTCTGCTCGCGAAGTTAATGGAACAGTATCTTGACT-CTTCTGCGGTGCGAGTTGTT 655
| ||||||||| | |||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 528 CAGCTCTGCTCACTAAGTTACTGGAACAGTATCTTGA-TCCTTCTGCGGTGCGAGTTGTC 586
Query 656 GAAGGAGCTGTTACTGAAACAACTGCTCTGCTGGAGCAGAAGTGGGACAAGATATTCTAC 715
|||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 587 GAAGGAGCTGTTACCGAAACAAGTGCTCTGCTAGAGCAGAAGTGGGACAAGATATTCTAC 646
Query 716 ACAGGTAGTTCAAAAATTGGGCGTGTCATAATGGCGGCAGCTGCGAAGCATCTTACACCG 775
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 647 ACAGGTAGTTCAAAAATCGGACGTGTCATAATGGCGGCAGCTGCGAAGCATCTCACACCG 706
Query 776 GTTGTTCTGGAGCTTGGAGGAAAATCGCCTGTCGTTGTAGACTCGGATACCGATTTGAAA 835
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 707 GTTGTTCTAGAGCTTGGAGGAAAATCTCCTGTCGTTGTAGACTCGGATACCGATTTGAAA 766
Query 836 GTTACTGTGAGGCGGATAATCGCAGGCAAATGGGGTTGCAACAACGGACAGGCGTGCATT 895
||||| || ||||||||||||| ||||||||||||||| |||||||||||||||||| ||
Sbjct 767 GTTACCGTCAGGCGGATAATCGTAGGCAAATGGGGTTGTAACAACGGACAGGCGTGCGTT 826
Query 896 TCGCCAGACTATATCTTGACGACAAAAGAATATGCTCCAAAAGTGATTGATGCCATGAAG 955
||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 827 TCGCCGGACTATATCTTGACGACAAAAGAATATGCTCCTAAATTGATTGATGCCATGAAG 886
Query 956 AAAGAATTGGAGACATTTTATGGGAAGAACCCAATGGAGTCTAAAGATATGTCACGTATT 1015
|||||||||| |||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 887 CTTGAATTGGAGAAATTTTATGGGAAGAACCCTATAGAGTCGAAAGATATGTCACGTATC 946
Query 1016 GTAAACTCGACTCACTTTGATCGCTTGTCTAAGATGTTAGATGAGAAGGAAGTTTCTGAC 1075
|||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 947 GTAAACTCGAATCACTTTGATCGCTTGTCTAAGTTGTTAGACGAGAAGGAAGTTTCTGAC 1006
Query 1076 AAAATCGTCTACGGTGGTGAAAAGGACAGAGAAAATC-TGAAAATTGCTCCAACAATCTT 1134
||||| ||||| ||||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct 1007 AAAATTGTCTATGGTGGTGAAAAGGACAGAGAAAA-CTTGAAAATTGCTCCGACAATCTT 1065
Query 1135 GCTTGACGTACCATTAGATTCTCTGATCATGAGTGAAGAAATATTTGGCCCTCTCCTTCC 1194
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GCTCGATGTACCATTAGATTCTCTGATCATGAGTGAAGAAATATTTGGCCCTCTCCTTCC 1125
Query 1195 AATCCTCACGCTTAACAACTTGGAAGAGAGTTTTGACGTGATTCGTTCTCGACCTAAGCC 1254
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1126 AATCCTCACGCTTAACAACTTGGAAGAGAGCTTTGACGTGATTCGTTCTCGACCTAAGCC 1185
Query 1255 ACTTGCTGCATA-TATGTTTACACATAACAAGAAGCTGAAAGAGAAATTTGTAGCGACAG 1313
|||||| ||||| | |||||||||||||||||||| ||||||||| ||| | ||||||||
Sbjct 1186 ACTTGCGGCATACT-TGTTTACACATAACAAGAAGTTGAAAGAGAGATTCGCAGCGACAG 1244
Query 1314 TTTCCGCTGGAGGCATAGTGGTGAACGACATAGCTGTTCATCTTGCACTTCACACATTAC 1373
| ||||||||||||||||| || || |||||||||||||||||||||||||||||||| |
Sbjct 1245 TCTCCGCTGGAGGCATAGTAGTCAATGACATAGCTGTTCATCTTGCACTTCACACATTGC 1304
Query 1374 CATTTGGAGGAGTTGGTGAAAGTGGAATGGGTGCTTACCATGGTAAATTTTCATTTGATG 1433
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1305 CATTCGGAGGAGTTGGTGAAAGTGGAATGGGTGCTTACCATGGTAAATTCTCATTTGATG 1364
Query 1434 CTTTTAGTCACAAGAAGGCTGTTCTCTACAGAAGCCTTTTCGGTGATTCAGCAGTCAGGT 1493
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1365 CTTTTAGTCACAAGAAGGCGGTTCTCTACAGAAGCCTTTTCGGTGATTCAGCCGTCAGGT 1424
Query 1494 ATCCGCCTTACTCGAGAGGAAAGCTTAGATTGTTAAAAGCCCTTGTCGACAGCAATATAT 1553
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 ATCCGCCATACTCGAGAGGAAAGCTTAGATTGTTAAAAGCCCTTGTCGACAGCAATATAT 1484
Query 1554 TCGATATATTCAAAGTTCTTCTCGGTTTATCTTAAACGGTAAAAA 1598
||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct 1485 TCGATTTATTCAAAGTCCTTCTCGGTTTAGCTTAAACGGTAAAAA 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81475484535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5