BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475855
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
AT4G06570.1 | Symbols: | transposable element gene | chr4:3518... 1744 0.0
AT2G12420.1 | Symbols: | transposable element gene | chr2:5027... 1642 0.0
AT4G05505.1 | Symbols: | transposable element gene | chr4:2785... 1613 0.0
AT4G06627.1 | Symbols: | transposable element gene | chr4:3604... 1487 0.0
AT1G38140.1 | Symbols: | transposable element gene | chr1:1430... 433 3e-120
AT2G05647.1 | Symbols: | transposable element gene | chr2:2104... 296 4e-79
> AT4G06570.1 | Symbols: | transposable element gene | chr4:3518688-3520916
FORWARD LENGTH=2229
Length=2229
Score = 1744 bits (944), Expect = 0.0
Identities = 1237/1374 (90%), Gaps = 37/1374 (3%)
Strand=Plus/Plus
Query 367 AGTAGATTAGGTTTAGGGTTAATATTGAGTAGTGTGTGTGTATATGCTAAGTAGATTAGG 426
||| |||||||| || |||||||||||||| |||||||||||||||| |||||||
Sbjct 846 AGTTGATTAGGTGAAGCGTTAATATTGAGTA----ATGTGTATATGCTAAGTTGATTAGG 901
Query 427 TGTGTATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATATGTGTGTG 486
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 902 TTTGTATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATATGTGTGAG 961
Query 487 TTTGTAGATGCTAATTGGTTTATGTAATTGTAGGTTTGGTCACGACGATGGTAAGCTGAC 546
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 962 TTTATAGATGCTAATTGGTTTATGTAATTGTAGGTTTGGTCACGAAAATGGTAAGATGAC 1021
Query 547 CTAGAAGATCACAAAGGTATTCACAAACAAGTTTAATGGGCCATATTACAGTTGGAGCTG 606
| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 1022 CCAGAAGATCACAAAGGTATTTAAAAACAAGTTTGATGGGCCATATTACAGTTGGAGCTA 1081
Query 607 TGTACCTACTGAAAAAAGACACAAATACTTCCTCGAATTCGCGGTAAATTAAC---T-TC 662
||||||||| | |||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 1082 TGTACCTACAG-AAAAAGACACAAATACTTCCTCGAATTCGCCGTAAATTAACTTTTATC 1140
Query 663 T-CT--T-A-----TC-------TGTATCTATTTGGTTTGGTTTGGTTGTTTGATCACTA 706
| || | | || |||||| ||||||||||||||||||||||||||||||
Sbjct 1141 TCCTAGTAATCTCTTCTATTGTTTGTATCCATTTGGTTTGGTTTGGTTGTTTGATCACTA 1200
Query 707 ACATCAAACTCTCCTCTTGTTTTGTAGAAAACACACACATGGCATCCATCACTGACCAGT 766
|||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 1201 ACATCAAATTCTCCTCTTGTTTTATAGAAAACACACACTTGGCATCCATCACTGACTGGT 1260
Query 767 GTAATTGAAGAGAAATTCTACAAAATATGTGGGCTGCGTATGAAGGACATGGTTTCTAAG 826
||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1261 GTAATTGTAGAAAAATTCTACAAAATATGTCAGCTGCGTATGAAGGACATGGTTTCTAAG 1320
Query 827 GCTTGCTCAAAACGAGCCAATGAGAGACCGCCATGGATTGAGAAGACATTGTGGAAGGAA 886
|||||| |||||| | |||||||| || ||||||||||||||||||||||||||||||
Sbjct 1321 GCTTGCGCAAAACAAACCAATGAGCTTCCACCATGGATTGAGAAGACATTGTGGAAGGAA 1380
Query 887 ATGTGTGAGTATTAGGACACAGAAGAAGCCATTGCCAAGATTTCAACCACATCAGC-AGC 945
||||||| ||||| |||||||||||||| ||||||||||| || ||||||||| || ||
Sbjct 1381 ATGTGTGTGTATTGGGACACAGAAGAAGTCATTGCCAAGAGTTAAACCACATCCGCAAG- 1439
Query 946 TCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCATTTATCGGGGTCAAAGTCTTT 1005
||||||||||||||||||||||||||| ||||| || ||| |||||||| ||||||||||
Sbjct 1440 TCGAATGTCTGACCGTAATGGTCTTGGCCCTCAAAAACATGTATCGGGGACAAAGTCTTT 1499
Query 1006 CTTACAAATCGAGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTTATTTATTTAAGA 1065
||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1500 CTTACAAATCGAGTAAGAGATTGTAAGTTACATCAAGCACTCTTGTTTATTTA-TTAAGA 1558
Query 1066 TTTTGAATT-TTTTGTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATT 1124
| |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1559 ATCTGAATTGTTTTGTGAACAACATTTCAGGAAATTGAGCTGAGAAGACAACCTACTATT 1618
Query 1125 GGTGAGATATTCCTTAGGACTCATACCAAAAAAGATGGGACTTTTGTTGATAGGAAGGCG 1184
| ||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |
Sbjct 1619 GTTGAGATATTCCTTAGGACTCATACCAAAAAAGATGGGAC-GTTGTTGACACGAAGATG 1677
Query 1185 CAGGAAATTCATGAGGCATATTTG-AAGAACAAGGAAGCTAAGTTGGCTGCCCTTGAGAA 1243
|| ||||||||||||||||||||| | | |||||||||||||||||| | ||||||||||
Sbjct 1678 CAAGAAATTCATGAGGCATATTTGTATG-ACAAGGAAGCTAAGTTGGTTCCCCTTGAGAA 1736
Query 1244 TGATGAAGGGTCTGACGGTACATCCCGTCGATCAGAACTATCTCAAGAGGAGGATGATGA 1303
||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 1737 TGATGAAGGGTCTGATGGTACTTCCCGTCGATTAGAACTATCTCAAGAGGATGATGATGA 1796
Query 1304 GATCTTCCTTCATGTAATGTGGCTAATCCTCtttttttAAATTCACTTACTTCATCTTAT 1363
||| |||||||| ||||||||| |||| || ||||||| ||||||||| ||||||||| |
Sbjct 1797 GATTTTCCTTCAGGTAATGTGGTTAATACTTTTTTTTTTAATTCACTTCCTTCATCTTTT 1856
Query 1364 AAGAACTAATCCTCTTGTCtttt-tttGCAGT-AACTGTCACAAACGAGAGAGGGGTATA 1421
||||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||
Sbjct 1857 AAGAACTAATCCTCTTGTCTTTTGTTTGCATTCAACTGTCACAAACGAGAGAGAGGTATA 1916
Query 1422 CTTCGGAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCGGAAGTACCCAGGAAGCAG 1481
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 1917 CTTCGGAATGGGAAGCTTAGGGAGGTACATCAATGAGAAGCGGAAGTACCCATGAAACAC 1976
Query 1482 TTCTGCTTTCACTTCCTT-GCAGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAAC 1540
|| ||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 1977 TTATGCTTTCACTTCCTTTGCAATCACAGTTTGAGGAAGTCAACCGCAAGATAGAAGAAC 2036
Query 1541 AAGCAACTCTCCAAGCACATCGTGAGGCAGAG-ATATTGCCGGTGAAAGCTGAGCAAGCA 1599
|||| ||||||||| ||||||| |||||||| | ||||| ||| |||| ||||||||||
Sbjct 2037 AAGCGACTCTCCAATTACATCGTAAGGCAGAGGA-ATTGCGGGTAAAAGTTGAGCAAGCA 2095
Query 1600 GAGATCAAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTGAAG 1659
|| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 2096 GATATCAAGCGTGTTGCTAATAAGCAACAAACAGAGATCAAACACTTGAGGATGGTGAAG 2155
Query 1660 AAGTACTTGACCGAAACTGACCCCAAGTTTCTCGTCTTCCTCGAGTCTGCTGGT 1713
||||||||||| |||||| |||||| |||||||| ||||||||||||||||||
Sbjct 2156 AAGTACTTGACAGAAACTAACCCCATGTTTCTCGAATTCCTCGAGTCTGCTGGT 2209
Score = 104 bits (56), Expect = 3e-21
Identities = 68/73 (93%), Gaps = 3/73 (4%)
Strand=Plus/Plus
Query 335 TAAGTTGATTAGGTTTGCTAAT-TGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTG 393
||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 889 TAAGTTGATTAGGTTTG-T-ATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTG 946
Query 394 AGTAGTGTGTGTG 406
|||| | ||||||
Sbjct 947 AGTAATATGTGTG 959
> AT2G12420.1 | Symbols: | transposable element gene | chr2:5027376-5029321
REVERSE LENGTH=1946
Length=1946
Score = 1642 bits (889), Expect = 0.0
Identities = 1278/1450 (88%), Gaps = 90/1450 (6%)
Strand=Plus/Plus
Query 336 AAGTTGATTAGGTTTGCTAAT-TGGTAAGCTGAGTAGATTAGG-TTTAGGGTTAATATTG 393
|||||||||| || || | || ||||||||||||||||||||| ||||||||||||||||
Sbjct 443 AAGTTGATTATGTGTG-T-ATATGGTAAGCTGAGTAGATTAGGTTTTAGGGTTAATATTG 500
Query 394 AGT-A-GTGTGTGTGTAT--ATGCTAAGTAGATTAGGTGTGTATATGGTAAGCTGAGTAG 449
||| | |||||||| ||| ||||||||| |||| |||||||||||||||||||| ||||
Sbjct 501 AGTAATGTGTGTGTATATAGATGCTAAGTTGATTGGGTGTGTATATGGTAAGCTGTGTAG 560
Query 450 ATTAGGTTTAGGGTTAATATTGAGTAATATGTG--TGTGT-T---TG-T-A---GA-T-- 495
|||| |||||||| ||||||||||||||||||| ||| | | || | | || |
Sbjct 561 ATTACGTTTAGGGGTAATATTGAGTAATATGTGTATGTATATAGATGCTAAGTTGATTAG 620
Query 496 G----CTAATTGGTTTATGTAATTGTAGGTTTGGTCACGACGATGG----TAAGCTGACC 547
| ||||||||||||||||||||||| |||||||||||| |||| |||| |||||
Sbjct 621 GTCTTCTAATTGGTTTATGTAATTGTAGATTTGGTCACGACAATGGTAATTAAGTTGACC 680
Query 548 TAGAAGATCACAAAGGTATTCACAAACAAGTTTAATGGGCCA-TATTACAGTTGGAGCTG 606
| |||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 681 TGGAAGATTGCAAAGGTATTCACAAACAAGTTTGATGGGCCATTTTTACAGTTGGAGCTG 740
Query 607 TGTACCTACTGAAAAAAGACACAAATACTTCCTCGAATTCGCGGT-AA-----A------ 654
|||| |||||| ||||||||| |||||||||||||||||| | || || |
Sbjct 741 TGTATCTACTG-AAAAAGACATAAATACTTCCTCGAATTCAC-GTAAACTTCTATCTCCT 798
Query 655 -TTAA-C--TT-CTCTTATCTGTATCTATTTGGTTTGGTTTGGTTGTTTGATCACTAACA 709
|||| | || || || ||| |||| |||||||||||||| ||||||||||||||||||
Sbjct 799 GTTAATCTTTTACTATTGTCTATATCCATTTGGTTTGGTTTCGTTGTTTGATCACTAACA 858
Query 710 TCAAACTCTCCTC-TTGTTTTGTAGAAAACACACACATGGCATCCATCACTGACCAGTGT 768
||||||||||||| || |||||||||||||||||||||| ||||||||||| ||| || |
Sbjct 859 TCAAACTCTCCTCTTTTTTTTGTAGAAAACACACACATGACATCCATCACTAACCGGTAT 918
Query 769 AATTGAAGAGAAATTCTACAAAATATGTGGGCTGCGTATGAAGGACATGGTTTCTAAGGC 828
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 919 AATTGAAGAGAAATTCTACAAAATATGTTAGCTGCGTATGAAGGACATGGTTTCTAAGGC 978
Query 829 TTGCTCAAAACGAGCCAATGAG-AGACCGCCATGGATTG-AGAAGACATTGTGGAAGGAA 886
|||||||||| |||||||| || | |||||||||||||| || |||||||||||||||||
Sbjct 979 TTGCTCAAAATGAGCCAATTAGCA-ACCGCCATGGATTGAAG-AGACATTGTGGAAGGAA 1036
Query 887 ATGTGTGAGTATTAG-GACACAGAAGAAGCCATTGCCAAGA-TTTCAACCACATCAGCAG 944
||||||||||||| | ||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 1037 ATGTGTGAGTATT-GAGACACAGAAGAAGCCATTGCCAAGAGTTCCAATCACATCAGCAG 1095
Query 945 CTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCATTTATCGGGGTCAAAGTCTT 1004
||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||
Sbjct 1096 CTCGAATGTCTGACCGTAATGGTCTTGGTTCTCACAAGCATGTATCAGGGCCAAAGTCTT 1155
Query 1005 TCTTACAAATCGAGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTTATTTA--T--T 1060
||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1156 TCTTATAAATCGAGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTTATTTACATAAT 1215
Query 1061 -T--------AAGATTTTGAATT-TT-TT--GTGAACAACATTTCAGGAAATTGAGCTGG 1107
| |||| ||||||| || || |||||||||||||||||||||| ||||
Sbjct 1216 GTTTTTTCTTAAGAAGTTGAATTGTTGTTTTGTGAACAACATTTCAGGAAATTTAGCTCA 1275
Query 1108 GAAGACCACCTACTATTGGTGAGATATTCCTTAGGACTCATACCAAAAAAGATGGGACTT 1167
|||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1276 GAAGACCACCTAGTGTTGGTGAGATATTTCTTAGGACTCATACCAAAAAAGATGGGACTT 1335
Query 1168 TTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAAGT 1227
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1336 TTGTTGATAGGAAGGCGTAGGTAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAAGT 1395
Query 1228 TGGCTGCCCTTGAGAATGATGAAGGGTCTGACGGTACATCCCGTCGATCAGAACTATCTC 1287
|||||||| |||||||||||||||||||||| ||||| |||| | ||||| |||||||||
Sbjct 1396 TGGCTGCCGTTGAGAATGATGAAGGGTCTGATGGTACTTCCCATGGATCATAACTATCTC 1455
Query 1288 AAGAGGAGGATGATGAGATCTTCCTTCATGTAATGTGGCTAATCCTCttttt-ttAA-AT 1345
||||| |||||||||||||||||||||| ||||||||| ||||||| ||||| || ||
Sbjct 1456 AAGAGAAGGATGATGAGATCTTCCTTCAGGTAATGTGGTTAATCCTTTTTTTCTTTGTAT 1515
Query 1346 --TCACTTACTTCATCTTATAAGAACTAATCCTCTTGTCtttttttGCAGTAACTGTCAC 1403
|||||||||||||||| ||||||||||||||||||||| || | || ||||
Sbjct 1516 CATCACTTACTTCATCTTTTAAGAACTAATCCTCTTGTCT-------CA--A-CTATCAC 1565
Query 1404 AAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCG 1463
||||||| |||| ||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1566 AAACGAGTGAGGCGTATACTTCGGAATGGGAAGCTTAGGGAGGT-CATTAATGGGAAGCG 1624
Query 1464 GAAGTACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAA 1523
|||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||
Sbjct 1625 GAAGTACCCAAGAAGCAGTTATGCTTTCACTTCCTTGCAATCACATCTTGAGGAAGCCAA 1684
Query 1524 CCGCAAGATAGAAGAACAAGCAACTCTCCAAGCACATCGTGAGGCAGAGATATTGCCGGT 1583
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1685 TCGCAAGATAGAAGAACAAGCAACTCTCCAAGCACATCGTGAGGCAGAGGCATTGCGGGT 1744
Query 1584 GAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAACA 1643
||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1745 GAAAGCTGAGCAACCAAAGATCAAGCGTGTTGCTAATGAGCAACAAGAAGAGATCAAACA 1804
Query 1644 CTTGAGGATGGTGAAGAAGTACTTGACCGAAACTGACCCCAAGTTTCTCGTCTTCCTCGA 1703
|||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct 1805 CTTGAGGATGGTGAAGAAGTACTTGACCAAAACTGACCCTAGGTTTCTCGTCTTCCTCGA 1864
Query 1704 GTCTGCTGGT 1713
||||||||||
Sbjct 1865 GTCTGCTGGT 1874
Score = 128 bits (69), Expect = 2e-28
Identities = 95/107 (89%), Gaps = 4/107 (4%)
Strand=Plus/Plus
Query 399 TGTGTGTGTATATGCTAAGTAGATTAGGTGTGTATATGGTAAGCTGAGTAGATTAGGTTT 458
||||| | || |||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 427 TGTGTATATAGATGCGAAGTTGATTATGTGTGTATATGGTAAGCTGAGTAGATTAGGTTT 486
Query 459 -AGGGTTAATATTGAGTAATATGTGTGTGTTTGTAGATGCTAA-TTG 503
||||||||||||||||||| |||||||| | |||||||||| |||
Sbjct 487 TAGGGTTAATATTGAGTAAT--GTGTGTGTATATAGATGCTAAGTTG 531
> AT4G05505.1 | Symbols: | transposable element gene | chr4:2785708-2787991
FORWARD LENGTH=2284
Length=2284
Score = 1613 bits (873), Expect = 0.0
Identities = 1233/1398 (88%), Gaps = 60/1398 (4%)
Strand=Plus/Plus
Query 367 AGTAGATTAGGTTTAGGGTTAATATTGAGTAGTGTGTGTGTATATGCT--AAGTAGATTA 424
||| |||||| | || |||||||||||||| ||||||||| ||| || |||| |||||
Sbjct 818 AGTTGATTAGAATAAGAGTTAATATTGAGTAATGTGTGTGTGTATCCTCAAAGTTGATTA 877
Query 425 GGTGTGT-ATAT-GGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATT--G--A-----G 473
||||||| |||| ||| | ||| ||||||||| || ||||||||| | | |
Sbjct 878 GGTGTGTAATATATTTAA--TAAGTTGATTAGGTTAAGCGTTAATATTGAGTAATGTGTG 935
Query 474 TA-ATATG-T--G-TG--T--GTTTGTAGATGCTAATTGGTTTATGTAATTGTAGGTTTG 524
|| ||||| | | || | ||||||| ||||||||||||||||||||||| |||||||
Sbjct 936 TATATATGCTAAGTTGATTAGGTTTGTATATGCTAATTGGTTTATGTAATTGAAGGTTTG 995
Query 525 GTCACGACGATGGTAAGCTGACCTAGAAGATCACAAAGGTATTCACAAACAAGTTTAATG 584
|||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 996 GTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTCTTCACAAACAAGTTTAATG 1055
Query 585 GGCCATATTACAGTTGGAGCTGTGTACCTACTGAAAAAAGACACAAATACTTCCTCGAAT 644
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1056 GGCCATTTTACAGTTGGAGCTGTGTACCTACTGAAAGAAGACACATATACTTCCTCGAAT 1115
Query 645 TCGCGGTAAATTAA---CT-TCTCTTATCT-GTATC-T--ATTTGGTTTGGTTTGGTTGT 696
|||| |||||||| || |||||||| | | || | ||||||||||||||||||||
Sbjct 1116 TCGCAATAAATTAACTTCTATCTCTTAT-TAATCTCTTACATTTGGTTTGGTTTGGTTGT 1174
Query 697 TTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACACACATGGCATCCATC 756
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1175 TTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTACACACACATGGCATCCATC 1234
Query 757 ACTGACCAGTGTAATTGAAGAGAAATTCTACAAAATATGTGGG-CTGCGTATGAAGGACA 815
|||||| ||||| ||||||| ||||||| ||||||||| | ||||||||||||||
Sbjct 1235 ACTGACTGGTGTAGTTGAAGAAAAATTCTTTAAAATATGTCAAAC-GCGTATGAAGGACA 1293
Query 816 TGGTTTCTAAGGCTTGCTCAAAACGAGCCAATGAGAGACCGCCATGGATTGAGAAGACAT 875
||||||||||||||||| ||||||| || |||||| ||||||||||||||||||||||||
Sbjct 1294 TGGTTTCTAAGGCTTGCGCAAAACGTGCAAATGAGCGACCGCCATGGATTGAGAAGACAT 1353
Query 876 TGTGGAAGGAAATGTGTGAGTATTAGGACACAGAAGAAGCCATTGCCAAGATTTCAACCA 935
|||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 1354 TGTGGAAGGAAATGTGTGCGTATTGGGACACAAAAGAAGCCATTGCCAAGAGTTCAACCA 1413
Query 936 CATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCATTTATCGGGGT 995
||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||
Sbjct 1414 CATCAGCAGCTTGAATGTCTGACCGTAATGGTCCTGGTCCTCACAAACATGTATCGGGGC 1473
Query 996 CAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTACATCAAGC--ACTCT-T-GT 1051
|||||||||||||||| || ||||||||||| ||||||||||| | | | | | |
Sbjct 1474 CAAAGTCTTTCTTACAGATTGAGCAAGAGATAGTAAGTTACATTT-GTTTATT-TATAGA 1531
Query 1052 TT-ATTTAT-TTAAGATTTTGAATT-TTTTGTGAACAACATTTCAGGAAATTGAGCTGGG 1108
| |||| | |||||| | |||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1532 ATGATTTTTATTAAGAGTCTGAATTGTTTTGTGAACAACATTTCAGGAAATTGAGTTGGG 1591
Query 1109 AAGACCACCTACTATTGGTGAGATATTCCTTAGGACTCATACCAAAAAAGATGGGACTTT 1168
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1592 AAGACCACCTACTATTGGTGAGATATTCGTTAAGACTCATACCAAAAAAGATGGGACTTT 1651
Query 1169 TGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAAGTT 1228
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1652 TGTTGATAGGAAGGCGCATGAAATTCATGAGGCATATTTGAGGAACAAGGAAGCTAAGTT 1711
Query 1229 GGCTGCCCTTGAGAATGATGAAGGGTCTGACGGTACATCCCGTCGATCAGAACTATCTCA 1288
|||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1712 GGCTGCCCGTGAGAATGATGAAGGGTCAGATGGTACTTCCCGTCGATCAGAACTATCTCA 1771
Query 1289 AGAGGAGGATGATGAGATCTTCCTTCATGTAATGTGGCTAAT-CCTCtt-t-ttttA--- 1342
||||||||||||||| |||||||||| |||||| | || | |||||| | ||||
Sbjct 1772 GGAGGAGGATGATGAGGTCTTCCTTCAGGTAATG-GTCTTGTTCCTCTTGTCTTTTTTTT 1830
Query 1343 A-ATT--CACTTACTTCATCTTATA-AGAACTAATCCTCTTGTCtttt-tttGCAGT-AA 1396
| ||| ||||| ||||||||| | | || ||||||||||||||||| |||||||| ||
Sbjct 1831 ATATTATCACTTGCTTCATCTTTTCTACAA-TAATCCTCTTGTCTTTTGTTTGCAGTCAA 1889
Query 1397 CTGTCACAAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTAGGGAGGTACATCAATG 1456
||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1890 CTGTCACAAACAAGAGATGGGTATACTTTGGAATGGGAAGCTTAGGGAGGTACATCAATG 1949
Query 1457 GGAAGCGGAAGTACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCTTGAGG 1516
| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 1950 GAAAGCGGAAGTACCCAGGCTGCAGTTCTGCTTTCACTACCTTGCAGTCACAGCTTTAGG 2009
Query 1517 AAGCCAACCGCAAGATAGAAGAACAAGCAACTCTCCAAGCACATCGTGAGGCAGAGATAT 1576
|||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 2010 AAGCCAACTGCAAGATAGAAGAACAAGCGACTCTCCAGGCACATCGTGAGGCAGAGGCAT 2069
Query 1577 TGCCGGTGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAATGAGCAACAAGCAGAGA 1636
|| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 2070 TGAGGGTGAAAGCTGAGCAAGCAGATATCAAGCGTGTTGCTAATGAGCAACAAGAAGAGA 2129
Query 1637 TCAAACACTTGAGGATGGTGAAGAAGTACTTGACCGAAACTGACCCCAAGTTTCTCGTC- 1695
||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |
Sbjct 2130 TCAAACACTTGAGGATGGTTAAGAAGTACTTGACAGAAAGAGACCCCAAGTTTCTCG-CA 2188
Query 1696 TTCCTCGAGTCTGCTGGT 1713
||||||||||||||||||
Sbjct 2189 TTCCTCGAGTCTGCTGGT 2206
Score = 313 bits (169), Expect = 4e-84
Identities = 232/263 (88%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 73 AATCGAAGACCTAGGGGTCTTCCCAGCCAGTACGAGTTCACGCCGGTGAATCGTCAAGCC 132
|||||||| || || |||| ||||||||| ||||||||||||| ||||| ||||| ||||
Sbjct 112 AATCGAAGGCCCAGTGGTCATCCCAGCCACTACGAGTTCACGCTGGTGATTCGTCCAGCC 171
Query 133 CCTCTTCAAGATTCTGAACAAGAGCCGATTGCACAGCC-TCTAACGGGTCCAACCATAAG 191
|| |||||||||| |||||| | |||| ||||||||| || |||||||||| || | ||
Sbjct 172 CCGCTTCAAGATTTTGAACATCATCCGACTGCACAGCCTTC-AACGGGTCCATCCGTCAG 230
Query 192 GGACTATCCTCATCCGATGCAACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGATCTCC 251
||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 231 GGACTATCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGGTCTCCTCGCGGATCTTG 290
Query 252 TTCTCCTCGCGGATCTGGAGCGACTCCATTTCGAGCATACGGATCGACTCAACCTAGATC 311
||||||||| ||||||||| |||||| ||| |||||| ||| |||||||||||||||||
Sbjct 291 TTCTCCTCGTGGATCTGGATCGACTCTGTTTTGAGCATCCGGCTCGACTCAACCTAGATC 350
Query 312 TGGAGGATCTGTTCATCGTCTAG 334
|||||||||||||||||||||||
Sbjct 351 TGGAGGATCTGTTCATCGTCTAG 373
> AT4G06627.1 | Symbols: | transposable element gene | chr4:3604916-3606209
FORWARD LENGTH=1294
Length=1294
Score = 1487 bits (805), Expect = 0.0
Identities = 1103/1240 (89%), Gaps = 48/1240 (4%)
Strand=Plus/Plus
Query 506 TTATGTAATTGTAGGTTTGGTCACGACGATGGTAAGCTGACCTAGAAGATCACAAAGGTA 565
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1 TTATGTAATTGTAGGTTTGGTCACGACAATGGTAAGCTGACCCAGAAGATCACAAAGGTA 60
Query 566 TTCACAAACAAGTTTAATGGGCCATATTACAGTTGGAGCTGTGTACCTACTGAAAAAAGA 625
|||| |||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||
Sbjct 61 TTCATAAACAAGTTTGATGGGCCATTTTACAGTTGGAGATGTGTACCTACTGAAAGAAGA 120
Query 626 CACAAATACTTCCTCGAATTCGCGGTAAATTAA---CT-TCTCTTATCT-GTATC-T--A 677
|||| ||||||||||||||||| |||||| ||| || |||||||| | | || | |
Sbjct 121 CACATATACTTCCTCGAATTCGAGGTAAAGTAAGTTCTATCTCTTAT-TAATCTCTTACA 179
Query 678 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAA 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTA 239
Query 738 CACACACATGGCATCCATCACTGACCAGTGTAATTGAAGAGAAA-TTCTACAAAATATGT 796
|||||||||||||||||||| ||||| ||||| ||||| | | | |||| |||||||||
Sbjct 240 CACACACATGGCATCCATCAGTGACCGGTGTAGTTGAATA-ATAGTTCTTTAAAATATGT 298
Query 797 GGG-CTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCAATGAGAGACC 855
| ||||||||||||||||||||||||||||||| ||| ||| ||||||||| ||||
Sbjct 299 CAAAC-GCGTATGAAGGACATGGTTTCTAAGGCTTGCGCAAGACGTGCCAATGAGCGACC 357
Query 856 GCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGAGTATT-AGGACACAGAAGAAG 914
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 358 GCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGCGTATTGAG-ACACAGAAGAAG 416
Query 915 CCATTGCCAAGAT-TTCAACCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGT 973
||||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 CCATTACCA-GAAGTTCAACCACATCAGTAGCTCGAATGTCTGACCGTAATGGTCTTGGT 475
Query 974 CCTCACAAGCATTTATCGGGGTCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGT 1033
|||||||| ||| |||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 476 CCTCACAAACATGTATCGGGGCCAAAGTCTTTCTTACAGATTGAGCAAGAGATGGTAAGT 535
Query 1034 TACATCAAGC--ACTCT--TGTTT-ATTTAT-TTAAGATTTTGAATT-TTTTGTGAACAA 1086
||||| | | | | || | |||| | |||||| | |||||| ||||||||||||
Sbjct 536 TACATTT-GTTTATT-TAATGAATGATTTTTATTAAGAGTCTGAATTGTTTTGTGAACAA 593
Query 1087 CATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCCTTAGGACTC 1146
|||||||| |||||||||| |||||||||||||||||||||||| ||||| ||| |||||
Sbjct 594 CATTTCAGAAAATTGAGCTAGGAAGACCACCTACTATTGGTGAGGTATTCGTTAAGACTC 653
Query 1147 ATACCAAAAAAGATGGGACTTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATATT 1206
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 654 ATACCAAAAAAGATGGGACTTTTGTTGATAAGAAGGCGCAGGAAATTCATGAGGCATATT 713
Query 1207 TGAAGAACAAGGAAGCTAAGTTGGCTGCCCTTGAGAATGATGAAGGGTCTGACGGTACAT 1266
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 714 TGAAGAACAAGGAAGCTAAGTTGGCTGCCCGTGAGAATGATGAAGGGTCAGACGGTACTT 773
Query 1267 CCCGTCGATCAGAACTATCTC-AAGAGGAGGATGATGAGATCTTCCTTCATGTAATG-T- 1323
||||||||||||||||||||| || ||||||| |||||| |||||||||| || ||| |
Sbjct 774 CCCGTCGATCAGAACTATCTCTAA-AGGAGGAGGATGAGGTCTTCCTTCAGGTCATGGTC 832
Query 1324 --GG-CTAATCCTCttt-tt-t-tAA-ATTCACTTACTTCATCTTATAAG-AACTAATCC 1375
|| || | | ||| || | || || ||||| ||||||||| | | || |||| |
Sbjct 833 TTGGTCTTCTTTTATTTCTTCTCTATTAT-CACTTGCTTCATCTTTTCTGCAA-TAATTC 890
Query 1376 TCTTGTCtttt-tttGCAGT-AACTGTCACAAACGAGAGAGGGGTATACTTCGGAATGGG 1433
|| ||||||| |||||||| |||| ||||||||||||||||| ||||||| ||||||||
Sbjct 891 TC--GTCTTTTGTTTGCAGTCAACTATCACAAACGAGAGAGGGATATACTTTGGAATGGG 948
Query 1434 AAGCTTAGGGAGGTACATCAATGGGAAGCGGAAGTACCCAGGAAGCAGTTCTGCTTTCAC 1493
||||||||||||||||||||||||||||| |||||||||||| |||| || |||||||||
Sbjct 949 AAGCTTAGGGAGGTACATCAATGGGAAGCAGAAGTACCCAGGCAGCAATTTTGCTTTCAC 1008
Query 1494 TTCCTTGCAGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCAACTCTCCA 1553
| ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1009 TACCTTGCAATCACAACTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGACTCTCCA 1068
Query 1554 AGCACATCGTGAGGCAGAGATATTGC-CGGTGAAAGCTGAGCAAGCAGAGATCAAGCGTG 1612
|||||||||||||| |||| ||||| || ||||||||||||||||||| ||||||||||
Sbjct 1069 AGCACATCGTGAGGTAGAGGCATTGCGCG-TGAAAGCTGAGCAAGCAGATATCAAGCGTG 1127
Query 1613 TTGCTAATGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACCG 1672
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1128 TTGCTATTGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTTAAGAAGTACTTGACAG 1187
Query 1673 AAACTGACCCCAAGTTTCTCGTC-TTCCTCGAGTCTGCTG 1711
||||||||||||||||||||| | ||||||||| ||||||
Sbjct 1188 AAACTGACCCCAAGTTTCTCG-CATTCCTCGAGACTGCTG 1226
> AT1G38140.1 | Symbols: | transposable element gene | chr1:14300842-14302929
FORWARD LENGTH=2088
Length=2088
Score = 433 bits (234), Expect = 3e-120
Identities = 591/751 (79%), Gaps = 74/751 (10%)
Strand=Plus/Plus
Query 552 AGATCACAAAGGTATTCACAAACAAGTTTAATGGGCCATATTACAGTTGGAGCTGTGTAC 611
|||||||||| || || |||||||||||| ||| |||||||||||||||||| ||||| |
Sbjct 910 AGATCACAAAAGTTTTTACAAACAAGTTTGATGAGCCATATTACAGTTGGAGATGTGTGC 969
Query 612 CTACTGAAAAAAGACACAA-ATACTTCCTCGAATTCGCGGT-AAA--T-TAACTTCTCT- 665
|||||| || |||| | || ||||||| ||||||||| ||| ||| | || || ||||
Sbjct 970 CTACTGCAAGAAGAGA-AAGATACTTCTTCGAATTCG-GGTGAAACTTCTATCTCCTCTC 1027
Query 666 TATCTGTATCTATTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTG 725
|| | | |||| | |||| ||||||| ||| |||||||||||||||||||| |||||
Sbjct 1028 AAT-T-T-TCTA-CT--TTTGTTTTGGTTATTTCATCACTAACATCAAACTCTCTTCTTG 1081
Query 726 TTTTGTAGAAAACACACAC-A-TGGCATCCATCACTGACCAGTGTAATTGAAGAGAAATT 783
||||| | |||||||| || | ||| |||| ||||| || ||||| ||||||| ||||
Sbjct 1082 TTTTGCAAAAAACACATACAATTGGGATCCCTCACTTACTAGTGTGATTGAAGCCAAATA 1141
Query 784 CTACAAAATATGTGGGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGC 843
||| || || ||| ||||||||||| |||||||||| ||| | || | |||
Sbjct 1142 CTATAAGATTTGTCAACTGCGTATGAAAGACATGGTTTGTAA-G--TG-----AGGGAGG 1193
Query 844 CAATGAGAG--ACCGCCATGGATTGAGAAGACATTGT-GGAAGGAAATGTGTGAGTATTA 900
| ||||| ||| | ||||||||||| ||||||| |||| ||||||||| | ||||
Sbjct 1194 TTACGAGAGCAACCTCTTTGGATTGAGAACACATTGTGGGAA-GAAATGTGTAACTATTG 1252
Query 901 GGACACAGAAGAAGCCATTGCCAAGATTTCAACCACATCAGC-AGCTCGAATGTCTGACC 959
||||||||||||||||| || ||||||| ||| |||||| | | |||||||||||||||
Sbjct 1253 GGACACAGAAGAAGCCAAAGCAAAGATTTTAACTACATCATCTA-CTCGAATGTCTGACC 1311
Query 960 GTAATGGTCTTGGTCCTCACAAGCATTTATCGGGG-TCAAAGTCT-TTCTTACAAATCGA 1017
|||||||||||||||||||||||||| ||||||| | || || | |||||||||||| |
Sbjct 1312 GTAATGGTCTTGGTCCTCACAAGCATGTATCGGGCATGAA-GT-TGTTCTTACAAATCAA 1369
Query 1018 GCAAGAGATGGTAAGTT-A--CA-TC--AAGCACTC-TT--GTTTA-TT-TAT--T-T-- 1061
|||||| ||||||||| | || | || || | || ||||| || ||| | |
Sbjct 1370 ACAAGAGGTGGTAAGTTCAAACACTGTGAA-CATTTGTTTTGTTTACTTATATAATATCC 1428
Query 1062 A----A-GATTTTGAATT-TTTTGTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCA 1115
| | || |||| || |||||| ||||||||||||||| |||| | |
Sbjct 1429 ATCCTAAGAAGTTGATTTGTTTTGTTTACAACATTTCAGGAAGTTGA-C--------C-- 1477
Query 1116 CCTACTATTGGTGA-GATATTCCTTAGGACTCATACCAAAAAAGATGGGACTTTTGTTGA 1174
|||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1478 --TACTATTGGTGAAGTT-TTCCTTAGAACTCATACCAAAAAAGATGGGACTTTTGTCGA 1534
Query 1175 TAGGAAGGCGCAGGAAATTCATGAGGCATATTTGAAGAACAAGG-AAGCTAAGTTGGCTG 1233
|||||||| | ||||| |||||||| |||| ||||||||||| || ||||||||| ||
Sbjct 1535 TAGGAAGGTGGAGGAAGTTCATGAGTCATAAAAGAAGAACAAGGCAA-CTAAGTTGGTTG 1593
Query 1234 CCCTTGAGAATGATGAAGGGTCTGACGGTAC 1264
||||||| ||||||||||||| ||| |||||
Sbjct 1594 CCCTTGAAAATGATGAAGGGTATGAAGGTAC 1624
> AT2G05647.1 | Symbols: | transposable element gene | chr2:2104362-2104646
REVERSE LENGTH=285
Length=285
Score = 296 bits (160), Expect = 4e-79
Identities = 215/241 (89%), Gaps = 6/241 (2%)
Strand=Plus/Plus
Query 1464 GAAGTACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAA 1523
||||||||||| |||||||||| ||||||| ||||||| | ||||||||||||||||||
Sbjct 3 GAAGTACCCAGTAAGCAGTTCTTCTTTCACAACCTTGCAATTACAGCTTGAGGAAGCCAA 62
Query 1524 CCGCAAGATAGAAGAACAAGCAACTCTCCAAGCACATCGTGAGGCAGA-GATATTGCCGG 1582
|| ||||||||| |||||||| ||||| |||||||||||||||||||| | | |||| ||
Sbjct 63 CCTCAAGATAGATGAACAAGCTACTCTACAAGCACATCGTGAGGCAGAGGCT-TTGCGGG 121
Query 1583 -TGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAA 1641
|| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 122 TTG-CAGCTGAGCAAGCAGAGATCAAGCGGGTTGCAAATGAGCAACAAGCAGAGATCAAG 180
Query 1642 CACTTGAGGATGGTGAAGAAGTACTTGACCGA-AACTGACCCCAAGTTTCTCGTCTTCCT 1700
|||||||||||||||||||||||||||||| | ||| ||||| || ||||||| ||||||
Sbjct 181 CACTTGAGGATGGTGAAGAAGTACTTGACC-ACAACAGACCCAAATTTTCTCGCCTTCCT 239
Query 1701 C 1701
|
Sbjct 240 C 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84688319415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5