BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475858
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67540.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1279 0.0
> AT1G67540.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: petal,
leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED
DURING: L mature pollen stage, M germinated pollen stage,
4 anthesis, petal differentiation and expansion stage;
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:25311242-25312482 REVERSE LENGTH=1153
Length=1153
Score = 1279 bits (692), Expect = 0.0
Identities = 836/904 (92%), Gaps = 15/904 (2%)
Strand=Plus/Plus
Query 188 GGAGCAACCAACGAGAAGGAGGCCACGACGTCGTCCTCTTGAGACTTGTGGTGGTGTGAT 247
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 134 GGAGCAACCGGCGAGAAGGAGGCCGCGACGTCGTCCTCTTGAGACTTGTGGTGGTGTAAT 193
Query 248 ACTCTCCATGGCTCGTGTTGTATACACAAGAAGCCAGACTC---TGAAGAAGAAGAAGAA 304
|||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 194 ACTCTCCATGACTCGTGTTCTTTACACAAGAAGCCAGACTCTGATGAAGAAGAAGAAGAA 253
Query 305 TCTAGCCTCGTGGCTATTGCGGAAACTCTTCGAATTCGTTATCTTCTTTGTTTCGATGAC 364
|||| |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 254 TCTATCCTCTTGGCTATTGAGGAAACTCTTTGAATTCGTTATCTTCTTTGTTTCGATGAC 313
Query 365 AAGTCCGTTTCATCGCCATTTTCTCGCGATTCTCTCTGTAGCTGACGATCACATTCTCGC 424
||||||||||||||| |||||||||||| |||||||||||||||||||||| || |||||
Sbjct 314 AAGTCCGTTTCATCGTCATTTTCTCGCGGTTCTCTCTGTAGCTGACGATCATATACTCGC 373
Query 425 GTTGCAAGACGCGATTGAGACTTACTTCCCTTCTTCCAGCTTTGTGTTCGTCAAGATCTT 484
||| |||||||| || |||||||||||||||||||| ||| |||||| || ||||||||
Sbjct 374 GTTACAAGACGCAATCGAGACTTACTTCCCTTCTTCAAGCAATGTGTTTGTTAAGATCTT 433
Query 485 CGATTTGCTGATCATTGTAGAGACTCTGCCAGAGAAATTTGATGGATTTCTCAAGAAACT 544
|||||| ||||||||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct 434 TGATTTGTTGATCATTGTAGAGACTCTGCCAGAGAAACTTGATGGAGTGCTCAAGAAACT 493
Query 545 TCCGAGTTTGATGAACCGAGTGGCGTGGCTAGATTGGTTGTTGGTTCATGCTATTTCTTG 604
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 494 TCCGAGTTTGATGAGCCGAGTGGCGTGGCTAGATTGGTTGTTGGTTCATGTTATTTCTAG 553
Query 605 GCTTGGTTTGTTGGTGAACGTTTTGGGACGTTGGAGAGATAAGAACAAAGGGACGAAGGA 664
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 554 GCTTGGTTTGTTGGTGAACGTGTTGGGACGTTGGAGAGATAAGAACAAAGGGACGAATGA 613
Query 665 GAAAGAGATCACGGTCGATAGGAGCTTTAGCAGATCAGGATCAGTTTCagaagaagaaga 724
|||||||||||| || ||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 614 GAAAGAGATCACAGTTGATAGGAGCTTTAGCAGATCAGGGTCAGTTTCAGAAG-AG--GA 670
Query 725 ggaagagaagacgaaattcgggacagagaagaaagTGTCGTACAAAGAGGCATTACAGAG 784
||||||||||| ||| || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 671 GGAAGAGAAGAGGAATTTGGGGACGGAGAAGAAAGTGTCGTACAAGGAGGCATTACAGAG 730
Query 785 AGGAAGTAGTGGAGAAGATGGCGGTGGAAGCACTGGTCGCAGCAGCAGCAGCCGCGGAGA 844
||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct 731 AGGAAGTAGTGGAGAAGATGGCGGTGGAAGCACTGGTCGAAGCAGCAGTAGCCGCAGAGA 790
Query 845 TCCTATTTTGGAACTGTTTGAGACCGGATGGATTCAGAATCCCATCAAACGAAGTAGTAG 904
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TCCGATCTTGGAACTCTTTGAGACCGGATGGATTCAGAATCCCATCAAACGAAGTAGTAG 850
Query 905 AAGCGCGGATTCGCTCACCTTCTCGCGTTCTGAATCCTACTCGACCTGATCTCTTTCGTT 964
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 851 AAGCGCGGATTCGCTCACCTTCTCGCGTTCTGAATCCTATTCGACCTGATTTCTTTCG-- 908
Query 965 ATACGAGTTTGAACCCGAGGGGTGACACAATAGATTACATGTTTTGGTCTCTTTCAAGTA 1024
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 909 A---GA-TTTGAACCCGAGGGGTGACACAATAGCTTACATGTTTTGGTCTCTTTCAAGTA 964
Query 1025 CTTCTTGTATTC-TTGACTTTTGTAAATATCATATTCTAAGCAACCTAAGTTGAAGATTT 1083
|||||||||||| || ||||| |||||| |||||||||||| |||||||||| |||||||
Sbjct 965 CTTCTTGTATTCATT-ACTTT-GTAAATGTCATATTCTAAGTAACCTAAGTTTAAGATTT 1022
Query 1084 GTTT 1087
||||
Sbjct 1023 GTTT 1026
Score = 171 bits (92), Expect = 2e-41
Identities = 123/137 (90%), Gaps = 5/137 (4%)
Strand=Plus/Plus
Query 1 GCTCGCTT-TCCTCTGACTAACGTATAAAATCCTCAAACCAAACTAATTTTCTC-AAAGT 58
|||||||| ||| |||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 1 GCTCGCTTACCCT-TGACTAACGTATAAAATCCTGAAACCGAACTAATTTTCTCAAAAGT 59
Query 59 TTCCCAATCATTTTCCGGGAAAATTTACAGACGAGAAAACAAGAA-ATTTAGAAGCAGCT 117
||| | ||||||||||||||||||||||||||||||||| || || |||| ||| | |||
Sbjct 60 TTCTCGATCATTTTCCGGGAAAATTTACAGACGAGAAAATAA-AACATTTGGAATCTGCT 118
Query 118 ACATTCCTCATAAATGG 134
|||||||||||||||||
Sbjct 119 ACATTCCTCATAAATGG 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5