BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475859
Length=2847
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67560.1 | Symbols: LOX6 | PLAT/LH2 domain-containing lipoxy... 4357 0.0
> AT1G67560.1 | Symbols: LOX6 | PLAT/LH2 domain-containing lipoxygenase
family protein | chr1:25319899-25324264 FORWARD LENGTH=2928
Length=2928
Score = 4357 bits (2359), Expect = 0.0
Identities = 2661/2808 (95%), Gaps = 16/2808 (1%)
Strand=Plus/Plus
Query 1 AAAAATGTTCGTAGCGTCTCCGGTGAAGACCAACTTCAACGGCGTCAGCCTAGGTAGATC 60
||||||||||||||| |||||||| ||||| |||||||||||||||||||||| || |||
Sbjct 24 AAAAATGTTCGTAGCATCTCCGGTAAAGACGAACTTCAACGGCGTCAGCCTAGTTAAATC 83
Query 61 TCCGGCG-TTTCCTGCTCTTCCACGGCGGAGAAC-TCACCGAGTTCCTATTTCAAGACAG 118
||||||| ||||| |||||| || | || | ||| |||||||||||||| || ||||||
Sbjct 84 TCCGGCGTTTTCC-GCTCTTTCATGTCGTA-AACAACACCGAGTTCCTATATCCAGACAG 141
Query 119 GTTCGAGCAGTGATCAGCCGAGAAGAAAAAGCAGTTGATCAAGAAGA-GAGCGGAAAAAG 177
|||||||| ||||||||||| ||||||||||| || ||||||||||| | || ||||||
Sbjct 142 GTTCGAGCTGTGATCAGCCGTGAAGAAAAAGCGGTGGATCAAGAAGACG-GCAAAAAAAG 200
Query 178 TGCAAACAAACCAGTTATAAACTCTTCTCCATTTCCATGGCAAAGATCTAAGTATACGGG 237
| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 201 TACAAACAAACCACTAATAAACTCTTCTCAATTTCCATGGCAAAGATCTAAGTATACGGG 260
Query 238 ATCAAAGACTGTTACTGCTTTTGTGAAGATCAGGAAGAAGATCAAAGAAAAGTTAACAGA 297
||| |||||||||||||| ||||||| |||||||||||||||||||| ||| |||||||
Sbjct 261 ATCGAAGACTGTTACTGCGGTTGTGAAAATCAGGAAGAAGATCAAAGAGAAGCTAACAGA 320
Query 298 GAGATTTGAACATCAATTAGAGCTACTCATGAAAGCTATTGGTCAAGGGATGTTGATTCA 357
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 321 GAGATTTGAGCATCAATTAGAGCTTTTCATGAAAGCTATTGGTCAAGGGATGTTGATTCA 380
Query 358 GCTTGTCAGTGAAGAAATCGATCCTGACAA-TGGTAAAGGTC-GGAGGAGTTTAGAAACT 415
||||||||||||||||||||||||||| || ||||||||| | | | |||||||||| ||
Sbjct 381 GCTTGTCAGTGAAGAAATCGATCCTGA-AACTGGTAAAGG-CAGAAAGAGTTTAGAATCT 438
Query 416 CCGGT-ATTGGGACTCCCTAAGGCTGTGAAAGATCCGAGATACCTCGAATTCACAGCCGA 474
|| || | |||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 439 CCTGTGA-TGGGACTCCCAAAGGCTGTGAAAGATCCGAGATACCTCGTATTCACAGCCGA 497
Query 475 TTTCACTGTCCCGTTTAACTTTGGTAAACCTGGTGCCATTCTTGTCACCAATCTTCTTTC 534
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TTTCACTGTCCCGATTAACTTTGGTAAACCTGGTGCCATTCTTGTCACCAATCTTCTTTC 557
Query 535 CACTGAGATTTGCTTGTCGGAGATTATCATTAAAGATTCCAGTGACACAATTCTCTTCCC 594
|||||||||||||||||| || |||||||| ||||||||| |||||| |||||||||||
Sbjct 558 CACTGAGATTTGCTTGTCAGAAATTATCATCGAAGATTCCACTGACACCATTCTCTTCCC 617
Query 595 TGGACACACTTGGATTCAGTCTAGGAATGATAATCCTCAAGCCAGGATTATCTTTAGAAG 654
|| | ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 618 TGCAAACACTTGGATTCACTCTAAGAATGATAATCCTCAAGCCAGGATTATCTTTAGAAG 677
Query 655 TCAACCATGCCTACCTTCCGAGACTCCAGATGGGATCAAAGAACTACGGGAAAAGGACTT 714
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 678 TCAACCATGCCTACCTTCCGAGACTCCGGATGGGATTAAAGAACTACGGGAAAAGGACTT 737
Query 715 GGTCAGTGTCCGTGGTGACGGTAAAGGCGAGAGAAAGCCTCATGAGAGGATTTATGATTA 774
||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||
Sbjct 738 GGTCAGTGTCCGTGGTGACGGAAAAGGCGAGAGAAAACCTCATGAGAGAATTTATGACTA 797
Query 775 CGATGTTTACAATGATTTGGGAGATCCACGTAAAAAAGAACGAGTTAGGCCTGTTCTCGG 834
|||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 798 CGATGTTTACAACGATTTGGGAGATCCACGTAAAACAGAACGAGTTAGGCCAGTTCTAGG 857
Query 835 TGTTCCAGAGACGCCTTATCCAAGACGCTGCAGGACCGGCCGGCCTCTTGTTTCAAAAGA 894
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 858 TGTTCCAGAGACGCCTTACCCAAGACGCTGCAGGACCGGCCGGCCTCTCGTTTCAAAAGA 917
Query 895 TCCACCATGTGAGAGCAGAGGAAAGGAGAAGGAAGAATTTTATGTTCCAAGAGATGAAGT 954
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TCCACCGTGTGAGAGCAGAGGAAAGGAGAAGGAAGAATTTTATGTTCCAAGAGATGAAGT 977
Query 955 TTTCGAGGAAATTAAGAGAGATACCTTCAGAGCTGGGAGATTTAAGGCTCTCTTTCACAA 1014
|||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 978 TTTCGAGGAAATCAAGAGAGATACCTTCAGAGCAGGGAGATTTAAGGCTCTCTTCCACAA 1037
Query 1015 TCTTGTGCCATCTATTGCAGCAGCATTGTCAAACTTAGACATTCCCTTCACATGCTTCTC 1074
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TCTTGTACCATCTATTGCAGCAGCATTGTCAAACTTAGACATTCCCTTCACATGCTTCTC 1097
Query 1075 GGATATCGACAATTTATAT-AAATCTAACATTGTCTTGGGACATACCGAGCCAAAGGACA 1133
||||||||| ||||||||| ||| | |||||||||||||||||||| |||||||| ||||
Sbjct 1098 GGATATCGATAATTTATATAAAAGC-AACATTGTCTTGGGACATACTGAGCCAAAAGACA 1156
Query 1134 CTGGCCTAGGCGGCTTTATTGGCGGTTTCATGAATGGGATCCTCAATGTTACTGAAACAC 1193
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1157 CTGGCCTTGGCGGCTTTATCGGCGGTTTCATGAATGGGATCCTCAACGTTACTGAAACAC 1216
Query 1194 TGCTAAAATATGACACTCCAGCCGTTATAAAATGGGACAGGTTTGCCTGGCTTCGAGATA 1253
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1217 TGCTAAAATATGACACTCCAGCCGTTATAAAATGGGACAGATTTGCGTGGCTGCGAGATA 1276
Query 1254 ATGAATTCGGACGTCAAGCTCTTGCTGGTGTCAACCCTGTGAACATTGAGCTGCTAAAGG 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1277 ATGAATTCGGACGTCAAGCTCTTGCTGGTGTCAACCCTGTGAACATTGAGCTACTAAAGG 1336
Query 1314 AGCTACCGATTCGAAGCAAGCTTGACCCGGCTCTATATGGACCTCAAGAATCTGCTCTCA 1373
|||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1337 AGCTGCCAATTCGAAGCAATCTTGACCCGGCTCTATATGGACCTCAAGAATCTGTTCTCA 1396
Query 1374 CAGAAGAAGTCATAGCTCGAGAAGTTGAACACTATGGAACTACTATAGAAAAGGCGCTTG 1433
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1397 CAGAAGAAATCATAGCTCGAGAAGTTGAACATTATGGAACTACTATAGAAAAGGCGCTTG 1456
Query 1434 AGGAGAAGAGATTGTTTCTTGTGGATTACCATGACATGCTCTTGCCATTTGTAGAGAAGA 1493
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1457 AGGAGAAGAGATTGTTTCTTGTGGATTACCATGACATACTCTTGCCATTTGTAGAGAAGA 1516
Query 1494 TAAACTCTATCAAAGAAGATCCAAGAAAGACATATGCTTCAAGAACAATCTT-TTATTAT 1552
||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 1517 TAAACTCTATCAAAGAAGATCCAAGGAAGACATATGCTTCAAGAACAATCTTCTT-CTAT 1575
Query 1553 TCAAAGAACGGAGCCCTGCGGCCCTTGGCCATAGAGCTCTCGCTGCCTCCCACACCCGAA 1612
|||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 1576 TCAAAGAATGGAGCCCTGCGGCCATTGGCCATAGAGCTCTCGCTGCCTCCTACAGCCGAA 1635
Query 1613 TCCGAGAACAAGTTTGTTTATATTCACGGACATGACGCTACTACTCACTGGATTTGGAAA 1672
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1636 TCCGAGAACAAGTTTGTTTATACTCATGGACATGACGCTACTACTCACTGGATTTGGAAA 1695
Query 1673 CTAGCCAAAGCTCATGTCTGCTCAAATGATGCTGGTGTTCACCAACTTGTGAACCACTGG 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 CTAGCCAAAGCTCATGTCTGCTCAAATGATGCTGGTGTTCACCAACTTGTGAACCACTGG 1755
Query 1733 CTAAGGACTCACGCTGCCATGGAGCCATACATCATTGCTACTAACAGACAGTTGAGTACG 1792
||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1756 CTAAGGACTCATGCTTCCATGGAGCCTTACATCATTGCTACTAACAGACAGTTGAGTACA 1815
Query 1793 ATGCATCCGGTTTACAAGCTGCTTCATCCTCATATGCGCTACACGCTTGAAATTAATGCT 1852
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1816 ATGCATCCGGTTTACAAGCTACTTCATCCTCATATGCGCTACACGCTTGAAATCAATGCT 1875
Query 1853 CGTGCGCGTAAAAGCTTAATCAATGGAGGAGGAATCATCGAAAGTTGCTTCACTCCCGGA 1912
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1876 CGTGCGCGTAAAAGCTTAATCAACGGAGGAGGAATCATCGAAAGTTGCTTCACTCCCGGA 1935
Query 1913 AAATACGCAATGGAACTTAGCTCTGCAGCGTACAAGTGCATGTGGCGGTTTGATATGGAA 1972
|||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 1936 AAATACGCAATGGAACTTAGCTCTGCAGCGTACAAGAGCATGTGGCGATTTGACATGGAA 1995
Query 1973 GGACTTCCTGCTGATCTTATTCGGAGGGGAATGGCAGAGGAGGATTCATCAGCGGAATGT 2032
|||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1996 GGACTTCCTGCTGATCTTGTTCGGAGGGGAATGGCAGAAGAGGATTCATCAGCCGAATGT 2055
Query 2033 GGCGTGAAGCTTGTGATCGATGATTATCCATATGCAGCAGACGGTCTTTTGATCTGGAAA 2092
||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2056 GGCGTGAGGCTTGTGATTGACGATTATCCATATGCAGCAGACGGTCTTTTGATCTGGAAA 2115
Query 2093 GCCATCAAGGACCTAGTCGAATCCTATGTCAAACACTTCTACTCTGATCCCAAATCCATA 2152
||||||||||||||||| ||||| ||||| |||||||| ||||||||| |||| ||||||
Sbjct 2116 GCCATCAAGGACCTAGTGGAATCTTATGTTAAACACTTTTACTCTGATTCCAAGTCCATA 2175
Query 2153 ACCTCTGACCTTGAGCTCCAAGCTTGGTGGGATGAGATCAAGAACAAAGGTCACTACGAC 2212
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2176 ACATCTGACCTTGAGCTGCAAGCTTGGTGGGATGAGATCAAGAACAAAGGTCATTACGAC 2235
Query 2213 AAGAAAGACGAACCTTGGTGGCCTAAACTCAACACAACACAAGACTTGTCCCAAATACTA 2272
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2236 AAGAAAGACGAGCCTTGGTGGCCTAAACTCAACACAACACAAGACTTGTCCCAAATACTA 2295
Query 2273 ACAAACATGATATGGATCGCCTCGGGTCAACACGCAGCCATAAACTTCGGACAGTACCCG 2332
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2296 ACCAACATGATATGGATCGCCTCGGGTCAACACGCAGCCATAAACTTCGGACAGTACCCG 2355
Query 2333 TTCGGAGGGTATGTCCCAAACCGACCTACCCTGTTGAGAAAACTTATACCGCAAGAAACT 2392
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2356 TTTGGAGGGTATGTCCCAAACCGACCTACCCTGTTGAGGAAACTTATACCGCAAGAAACT 2415
Query 2393 GACCCGGACTACGAAATGTTCATGCGAAACCCTCAATACAGCTTCCTAAGCTCTCTACCA 2452
|| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2416 GATCCGGACTACGAAATGTTCATGCGAAACCCTCAATACAGCTTTCTAGGCTCTCTACCG 2475
Query 2453 ACACAGCTCCAAGCAACCAAAGTGATGGCGGTCCAAGAAACGCTCTCGACACATTCCCCT 2512
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2476 ACACAGCTCCAAGCAACCAAAGTGATGGCGGTCCAAGAAACGCTCTCAACGCATTCCCCT 2535
Query 2513 GATGAAGAGTACTTGATCGAGCTGAGAGAAGTGCAGAGACATTGGTTCCAAGATGAAGAA 2572
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2536 GACGAAGAGTACTTGATCGAGCTGAGAGAAGTGCAAAGACATTGGTTCCAAGATGAACAA 2595
Query 2573 GTGGTTAAGTATTTTAACAAGTTCTCGGAAGAACTTGTGAAGATAGAGAAGACGATCAAC 2632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2596 GTGGTTAAGTATTTTAACAAGTTCTCGGAAGAACTTGTGAAGATAGAGAAGACGATCAAC 2655
Query 2633 GAGAGAAACAAGGACAAGAAACTCAAGAACAGAACAGGTGCTGGAATGCCTCCTTATGAA 2692
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2656 GAGAGAAACAAGGACAAGAAACTAAAGAACAGAACAGGTGCTGGGATGCCTCCTTATGAA 2715
Query 2693 CTACTTCTCCCTACTTCACCACATGGAGTCACTGGCCGTGGTATTCCCAACAGCATTTCC 2752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2716 CTACTTCTCCCTACTTCACCACATGGAGTCACTGGCCGTGGTATTCCCAACAGCATTTCC 2775
Query 2753 ATTTAGATGTATGCACAACAGATTTGTATCATTATTATGTCTTATATG 2800
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2776 ATTTAGATGTATGCACAACAGATTTGTATCATTATTATGTCTTATATG 2823
Score = 52.8 bits (28), Expect = 2e-05
Identities = 31/32 (97%), Gaps = 1/32 (3%)
Strand=Plus/Plus
Query 2817 TAT-CACAAGAAGGTTTAATAATCTCTCACTG 2847
||| ||||||||||||||||||||||||||||
Sbjct 2885 TATGCACAAGAAGGTTTAATAATCTCTCACTG 2916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141470779260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5