BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475861
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67590.1 | Symbols: | Remorin family protein | chr1:2533305... 1834 0.0
> AT1G67590.1 | Symbols: | Remorin family protein | chr1:25333058-25334647
REVERSE LENGTH=1298
Length=1298
Score = 1834 bits (993), Expect = 0.0
Identities = 1189/1277 (93%), Gaps = 39/1277 (3%)
Strand=Plus/Plus
Query 1 TTAATGTCACATTTCTGAAATCTCTCAACTTCATCATCAAGTGGGTTCCTATGAGAGTGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAATGTCACATTTCTGAAATCTCTCAACTTCATCATCAAGTGGGTTCCTATGAGAGTGA 60
Query 61 CGACTCTTTGATTGCTTCGCCACATCTTTTATTATTATCCTTCTAAGTCATTTCTCTATC 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 CGACTCTTTGATTGCTTCGCCACATCTTTTATTTTTATCCTTCTAAGTCATTTCTCTATC 120
Query 121 TATCC------AT----A-----T-ATAGATCTC--TG------T-TTCGTAAGAATGAG 155
||||| || | | ||||||||| || | ||||||||||||||
Sbjct 121 TATCCATATAGATAAAAACCTTCTAATAGATCTCTGTGTCATTTTATTCGTAAGAATGAG 180
Query 156 ATCTAGTGTTGAAGATAACAAAGGATGGATAGGACCAGCAACACCGGAGATATCGAACGG 215
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 ATCTAGTGTAGAAGATAACAAAGGATGGATAGGACCAGCGACACCGGAGATATCGAACGG 240
Query 216 TTTTGAGTTTCAGAAAGGTTCTAACCGGACACCAAACCATCACCGGTCTACTATGGGGAA 275
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTTGAGTTTCAGAAAGGTTCGAACCGGACACCAAACCATCACCGGTCTACTATGGGGAA 300
Query 276 GCCTGCACCGTCAAAATGGGACGATGCTCAGAAATGGCTTTCTGGTGTAGGGTTTGCTCG 335
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCCAGCGCCGTCAAAATGGGACGATGCTCAGAAATGGCTTTCTGGTGTAGGGTTTGCTCG 360
Query 336 TGGAGGTGGTGGAGGTGGTGAGAAGAGTAGTCGTCATCACTCTAGAAGTAATCAGCCGAG 395
||||||||||||||||||||| ||||||| |||||||||| ||||||||| |||||||
Sbjct 361 TGGAGGTGGTGGAGGTGGTGACAAGAGTA---GTCATCACTCAAGAAGTAATAAGCCGAG 417
Query 396 AAACTCTAACGCTGATGATCTTAGACTTATAGCTTCAGCTTCACAAAGAGAACGTGAAGG 455
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 418 AAACTCGAACGCGGATGATCTTAGACTTATAGCTTCAGCTTCACAGAGAGAACGTGAAGG 477
Query 456 AGAAGATCAGTATGTTGAGTATGATGATGAAGAGATGGCTGCGGGAAGGCCGGAGGTTGA 515
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 478 AGAAGATCAGTACGTTGAGTATGATGATGAAGAGATGGCGGCGGGAAGACCGGAGGTTGA 537
Query 516 GACGAAGAATGTTGATTGTGGTGAATCGGTTTGGAGGAAAGATAGTAGTATTAATCCAAC 575
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 538 GACGAAGAATGTTGATTGTGGTGAATCTGTTTGGAGGAAAGAAAGTAGTATTAATCCAAC 597
Query 576 GGCTGGGATTAGATCGGTTTGTGTGAGAGATATGGGGACTGAGATGACTCCTATTGGGAG 635
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 598 GGCTGTGATTAGATCCGTTTGTGTGAGAGATATGGGGACTGAGATGACTCCTATTGGTAG 657
Query 636 TCAAGAGCCTTCTAGAACAGCTACACCGGTGCGAGCTACTACGCCGGTTGGGAGAAGTCC 695
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 658 TCAAGAGCCTTCTAGAACAGCTACACCGGTGCGAGCTACTACACCGGTTGGGAGGAGTCC 717
Query 696 TGTGACTTCACCGGTGAGGGCTTCGCAACGCGGTGAGGCGGTGGGGATTGTGACGGAGCC 755
|||||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||| |
Sbjct 718 TGTGACTTCACCGGTGAGGGCTTCACAACGTGGTGAGGCGGTGGGGGTTGTGATGGAGAC 777
Query 756 TGTGATGGAGGTTAGGAGGGTAGAGAGTAATAATAATGAGAAGAG-TAATGGTTTTGGGG 814
|||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||
Sbjct 778 GGTGACGGAGGTTAGGAGGGTAGAGAGTAATAATAGTGAGAAG-GTTAATGGTTTTGTGG 836
Query 815 AGAGTAAGAAGGCGATGAGTGCGATGGAAGCTCGAGCTATGGCTTGGGATGAAGCAGAAC 874
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 837 AGAGTAAGAAGGCTATGAGTGCTATGGAAGCTCGAGCCATGGCTTGGGATGAAGCAGAAC 896
Query 875 GTGCTAAATTCATGGCTAGGTATAAGAGAGAGGAAGTGAAGATACAAGCTTGGGAGAATC 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTGCTAAATTCATGGCTAGGTATAAGAGAGAGGAAGTGAAGATACAAGCTTGGGAGAATC 956
Query 935 ATGAGAAGAGAAAGGCAGAGATGGAGATGAAGAAAATGGAGGTGAAGGCGGAGAGGATGA 994
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ACGAGAAGAGAAAGGCTGAGATGGAGATGAAGAAAATGGAGGTGAAGGCGGAGAGGATGA 1016
Query 995 AAGCAAGGGCAGAGGAGAAGCTGGCCAACAAGCTAGCGGCGACGAAAAGGATAGCGGAAG 1054
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1017 AAGCAAGGGCAGAGGAGAAGTTGGCCAACAAGCTAGCTGCGACGAAAAGGATAGCGGAAG 1076
Query 1055 AGAGGAGGGCAAACGCGGAGGCGAAACTAAACGAAAAGGCGGTGAAGACATCGGAGAAAG 1114
|||||||||| || |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1077 AGAGGAGGGCGAATGCGGAGGCTAAGTTAAACGAAAAGGCGGTGAAGACATCGGAGAAAG 1136
Query 1115 CCGATTATATAAGGAGAAGTGGTCACTTGCCTTCTTCTTTTTCTTTCTCATTTAAGCTTC 1174
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1137 CTGATTATATAAGGAGGAGTGGTCACTTGCCTTCTTCTTTTTCTTTCTCCTTTAAGCTTC 1196
Query 1175 CCTCTCGCTGTTGGTGTCAATAATCGTCTATTCTCATTATTTTCTTTAGAATGTAATCGT 1234
||||||| |||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 1197 CCTCTCGTTGTTGGTGTCAATAATTGTCTATTTTCATTA---------GAATGTAATCGT 1247
Query 1235 ATGGATTTAGTGATATT 1251
|||||||||||||||||
Sbjct 1248 ATGGATTTAGTGATATT 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61495667625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5