BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475863
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67620.1 | Symbols: | Lojap-related protein | chr1:25340575... 876 0.0
> AT1G67620.1 | Symbols: | Lojap-related protein | chr1:25340575-25342082
FORWARD LENGTH=877
Length=877
Score = 876 bits (474), Expect = 0.0
Identities = 597/651 (92%), Gaps = 29/651 (4%)
Strand=Plus/Plus
Query 1 TTAGCTAATGTTGACAG-CTCTCCGATCTCGTTGTTCGTCTCTTCTTCTAGATCAATCGT 59
||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 4 TTAGCTAATGTTGAC-GACTCTTCGATCTCGTTGTTCGTCTCTTCTTCTAAATCAATCAT 62
Query 60 GGAAGCTAGGTTTAACAACTCCCAATCGCATCTTCGCTTCCTCTCCCTCTTTTTCTTCA- 118
|||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GGAAGCTA-G--------CTCCCAATCGCATCTTCGCTTCCTCTCCCTCTTTTTCTTCAT 113
Query 119 --------ATCTCTGATGTCTCAGACG-TTCTTACACTTCCCGAAGTTGAGAAGATACTC 169
|||||| |||||||||| | |||| |||||||||||||| |||||||| |||
Sbjct 114 CCGCCGGGATCTCTAATGTCTCAGA-GATTCTCACACTTCCCGAAGTGGAGAAGATTCTC 172
Query 170 GCCGACGTTAAAGCTGATAACGTGACTGTGATTCCTACACATAATCACTGTTTCTGGGCT 229
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 173 GCCGACGTGAAAGCTGATAACGTGACTGTGATTCCTACACATAATCATTGTTTCTGGGCT 232
Query 230 GATTTCACGGTCATCGCCACCGGAAGATCCGATTGGCACTTAAGAAACATCGCTCAAGCA 289
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 233 GATTTCACTGTCATCGCCACCGGTAGATCCGATTGGCACTTAAGAAACATCGCTCAAGCT 292
Query 290 TTAGTCTATAGGGCCAAGCAAAAGCAGAAAGGAGCTAAACATGTAATGCTACCTTCTGTG 349
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 293 TTAGTTTATAGGGCCAAGCAAAAGCAGAAAGGAGCTAAACATGTAATGTTACCTTCTGTG 352
Query 350 CAAGGGTACAATAGCAAGTGGATTGTCATTGACTACGGAAAGTTTGTAGTCCATGCACTT 409
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 353 CAAGGGTACAATAGCAAGTGGATTGTCATAGACTACGGAAAGTTTGTAGTCCATGCACTT 412
Query 410 GATGAGAAAGCCAGGGGTTATTTCAATTTGGAAAGTCTTTGGTCTGCTGAATCATCTGCT 469
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct 413 GATGAGAAAGCCAGAGGTTATTTCAATTTGGAAAGCCTTTGGTCTGCTGAATCCTCTGGT 472
Query 470 ACTGATACTTCAGATCAGGATCTCCAAAACGCTTTTGTAAAGGTCCGACCTAAGAACAAT 529
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 473 ACTGATACTTCAGATCAGGATCTCCAAAACGTTTTTGTAAAGGTCCGACCAAAGAACAAT 532
Query 530 TCGAAAAGGAAACCGGCTAAAGTGAGTTCTTGATCATGTACGATGAACATACAATTTGTC 589
||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||| ||
Sbjct 533 TCGAAAAGGAAACCGGCTAAAGTGAGTTCTTGATCCTGTCCGATGGA--TACAATTTCTC 590
Query 590 ATAAACTTCTCGAGTCTAGACCG-GTTAAGAATAGGA---TTTTAAAGCCt 636
||||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 591 ATAAACTTCTCGAGTCTAGAC-GAGTTAAGAATAGGAGGATTTTAAAGCCT 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5