BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475864
Length=2062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67630.1 | Symbols: POLA2 | DNA polymerase alpha 2 | chr1:25... 3153 0.0
> AT1G67630.1 | Symbols: POLA2 | DNA polymerase alpha 2 | chr1:25344440-25348406
REVERSE LENGTH=2115
Length=2115
Score = 3153 bits (1707), Expect = 0.0
Identities = 1910/2009 (95%), Gaps = 10/2009 (0%)
Strand=Plus/Plus
Query 60 GAGAGTGAAGTTGAAAGAGCGATGGCTACAGATGAGGAAATAAAGAATGAATTCAAAAGA 119
|||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 100 GAGAGTGAAGTTGAAAGA-AAATGGCTACAGATGAGGAAATAAAGAACGAGTTTAAAAGA 158
Query 120 AGCGGCTTTACTCTTGTCGAAGAAGACGATATTCTTAAGCGATGTGTTACTCTCTGCATA 179
|||||||||| |||||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 159 AGCGGCTTTATTCTTGTGGAAGAAGACGAGATTCTTAAGAGATGTGTTACTCTCTGCATA 218
Query 180 AACTACAGTCTCAATCCTTCTGATCTCGTTTCAAGTTGGGAACTTTATCATCTCAATCGA 239
|| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 219 AATTACAGTCTTAAGCCTTCTGATCTTGTTTCAAGTTGGGAACTTTATCATCTCAATCGA 278
Query 240 CAACTTCTTGATCAAACTGTTAAGAAAGACGAGATGGATGGGTTTGTACTT-CATCTTCA 298
||||||||||||||||||||||||||||| || ||||||||||||||| || ||||||||
Sbjct 279 CAACTTCTTGATCAAACTGTTAAGAAAGATGACATGGATGGGTTTGTA-TTGCATCTTCA 337
Query 299 GAACGAACAGAAAGAATCTATTATGAGAGCGGAAGAAGCTGGTCTGCATCTTTACTCGAA 358
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 338 GAATGAACAGAAAGAATCTATTATGAGAGTGGAAGAAGCTGGTCTGCATCTTTACTCAAA 397
Query 359 TAGAGATGTAGATATGCTTTTGGATGGTGTGCAAGAAGATACGGAAGAGATTGTTACTAC 418
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 398 TAGAGATGTAGATATGCTTTTGGATGGGGTGCAAGAAGATACGGAAGAGATTGTTACTAC 457
Query 419 TCCTACAAACAAGTCTCAACGGTTACATCCTGATCCGTTTGATTCGATAAGCAGATCAAG 478
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 458 TCCTACAAACAAGTCTCAACGGTTACATCCGGATCCGTTTGATTCGATAAGTAGATCAAG 517
Query 479 AGATTACGGTTACTCTACTGGGAAGTCAGTTGGACATGTGACACCTTTTGGGTCACGAAT 538
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AGATTATGGCTATTCTACTGGGAAGTCAGTTGGACATGTGACACCTTTTGGGTCACGAAT 577
Query 539 CGAAAAGTTTGTGGTGAAGTTTAACGTTGGTAATGTGGC-TC-C-TGCAGAGAATGGAAA 595
||| ||||||||||||||||| || || ||||||||||| | | |||||||||||||||
Sbjct 578 CGAGAAGTTTGTGGTGAAGTTCAATGTGGGTAATGTGGCGGCACATGCAGAGAATGGAAA 637
Query 596 CAGCAATGA-GATAGAAAACAGTGAGGATGATATTATTAAGAGAGTTCAAACCAGCCAGC 654
|| |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 638 CAACAATGATG-TAGAAAACAGTGAGGATGATATCATTAAGAGAGTTCAAACCAGCCAGC 696
Query 655 GGTGTTCTCTAGAAGTCAATGGCTCAGGCCCTGAACCAGGTTGCAGGTTCATGTATGACA 714
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 GGTGTTCTCTAAAAGTCAATGGCTCAGGCCCTGAACCAGGTTGCAGGTTCATGTATGACA 756
Query 715 GAACTGAGGACAGGTTTAATGCACTCGAGAATCGGATTGTTAGGCACGCAGATGCGTTTG 774
|||||||||||||||||| |||||||||| ||||||| || ||||| |||||||| ||||
Sbjct 757 GAACTGAGGACAGGTTTAGTGCACTCGAGTATCGGATCGTAAGGCATGCAGATGCATTTG 816
Query 775 CTGCCTCAGGATTATATGAGGAACAAGTGGATCCAGCTGTTGCTTCACAGAGAAGTATAT 834
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 817 CTGCCTCGGGATTATATGAGGAACAGGTGGATCCGGCTGTTGCTTCACAGAGAAGTATAT 876
Query 835 TTGCTGTGGGAATGATTTGCTGTGATGGAGAGGGGCATTTGAATGACAAGTCCGTTCTAT 894
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 877 TTGCTGTGGGAATGATTTGCTGTGATGGAGAGGGGCATTTGAATGATAAGTCCATTCTAT 936
Query 895 TGCAGAGCAGTGCTGAGCGTACTTCAGGACAGCGTGTTCCACTGGATTTAAACAGACTAG 954
||||||||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 937 TGCAGAGCAGTGCCGAGCGTACTTCAGGACAGCGTGTTCCAGTGGACTTAAAGAGACTAG 996
Query 955 ACCAGTTCTCCATTTTTCCTGGCCAGATAGTTGGCATTGAGGGACAGAATCCTAGTGGAC 1014
| |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||
Sbjct 997 ATCAGTTCTCCATTTTTCCTGGCCAGGTAGTTGGCATTGAGGGGCAAAATCCTAGTGGAC 1056
Query 1015 ATTATCTCACTGCATCTAAGCTGCTAGATTCAGTTCCTTTAATACGTGCTGTTGACGTGG 1074
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1057 ATTATCTCACTGCATCTAAGCTGCTAGATTCAGTTCCTTTAACACTTACTGTTGACGTGG 1116
Query 1075 ATCTACCTCCTGCTAAGAGGCAAAACTTGGATCAGGAGGTCTTAGTTCCTACAGAAGAAT 1134
|||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 1117 ATCTACCTCCTGCTAAGAGGCAAATCTTGGATCAGGAAGTCTTAGTTCCTGCAGAAGAAT 1176
Query 1135 CCTGTGAAAGATCAGAGGTTTCATTTATAATTGCGTCCGGACCATTCACCACATCAGACA 1194
||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1177 CCTGTCAAAAATCAGAGGTTTCATTTATAATTGCATCCGGACCATTCACCACATCAGACA 1236
Query 1195 ACTTGCTGTTTGAGCCACTGAATGAGCTACTATCCTATGCAAAAAGAAAGCCACCACAGT 1254
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1237 ACTTGCTGTTTGAGCCACTGAATGAGCTACTAGCCTATGCAAAAAGAAAGCCACCACAGT 1296
Query 1255 TACTCGTGCTGCTTGGACCATTTGTGGATTCTGAGCATCCAGAGATTAAGAAAGGAGCTG 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1297 TACTCGTGCTGCTTGGACCATTTGTGGATTCTGAGCATCCAGAGATTAAGAAAGGCGCTG 1356
Query 1315 TTGATGCCACCTTTAGTGAGATATTCCAAGTGGAAGTCCTCAGGAAGTTGCGAGATTACG 1374
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1357 TTGATGCCACCTTTAATGAGATATTCCAAGTGGAAGTCCTCAGGAAGTTGCAAGATTACG 1416
Query 1375 TGGAATTCATGGGTTCAGAAGTAAGAGTGGTTCTGGTGCCATCCATCCGTGATGCTAACC 1434
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1417 TGGAATTCATGGGTTCAGAAGTAAGAGTGGTTCTGGTGCCATCCATTCGTGATGCTAACC 1476
Query 1435 ATAATTTCATATCCCCACAGCCTCCTTTCGACATTCATATACCTGATCTCGAACATCAGA 1494
|| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1477 ATGATTTCATATTCCCACAGCCTCCTTTCGACATTCACATACCTGATCTCGAACATCAGA 1536
Query 1495 TGACCAGTCTGTCAAACCCGGGGACCTTTGAGGCAAACCAGGTGAAGGTAGGTTGCTGCA 1554
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1537 TGACTAGTCTGTCAAACCCGGGGACCTTTGAGGCAAACCAGGTGAAGGTAAGTTGCTGCA 1596
Query 1555 CGGTGGATGTACTAAAACAGCTGAGTGGGGAGGAGATGTCAAAAAATCCAAGTGGAGTCC 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 CGGTGGATGTACTAAAACAGCTGAGTGGGGAGGAGATGTCAAAAAATCCAAGTGGAGTCC 1656
Query 1615 CCACTGATCGCATGTCCAGACTTGCTAGCCATCTCCTCCGTCAGCGAAGCTTCTATCCTC 1674
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1657 CCACTGATCGCATGTCCAGACTCGCTAGCCATCTCCTCCGTCAGCGAAGCTTCTATCCGC 1716
Query 1675 TGTATCCACCGCCCGAGAGCCTCCCTTATGATTCCTCACTCGCTCCTAAGGCGCTACAGA 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 TGTATCCACCGCCCGAGAGCCTCCCTTATGATTCCTCACTCGCTCCTAAGGCGCTACAGA 1776
Query 1735 TTTTATCAATCCCGGATATTCTTCTACTTCCATCAGACATGAGGTACTTTGTGAAGATTT 1794
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1777 TTTCATCAATCCCGGATATTCTTCTACTTCCATCAGACATGAGGTACTTCGTGAAGATTT 1836
Query 1795 TATCCCTTGGCGAAGAGGAAAATGCAGCCAAGTGTGTATGTGTAAACCCGGGAAGACTTG 1854
||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct 1837 TATCCCTTGGCGAAGAGGAGGATGCAGCCAAGTGCGTTTGTGTAAACCCGGGAAGACTTG 1896
Query 1855 CGAAAGGAGAAGGTGCAGGTACTTTTGTTGAGCTTACCTACAAAGGCGGTCCAGAATCGA 1914
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1897 CGAAAGGAGAAGGTGCAGGTACTTTCGTTGAGCTTACCTACAAAGGCGGTCCAGAATCGA 1956
Query 1915 TGCACGCTTCCATCATCTCTATTTAAAAACAGAACCCGCAACGTTTAGCC-AACTCTGCT 1973
|||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 1957 TGCACGCTTCCATCATCTCTATTTAAAAACAGAACCTGCAACGTTT-GCCCAACTCTGCT 2015
Query 1974 AATTTCATATATAAGAGAAACCTTTTATTCCTCTCACTTTTCATGCTACGGTTATATGCA 2033
|||| ||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct 2016 AATTCCATATATAATAGAAGCCTTTGGTTCCTCTCACTTTTCATGCTACGGTTAGATGCA 2075
Query 2034 AATGTAATCTGCAGATGTATAGTAAATCT 2062
|||||||| | ||||||||||||| ||||
Sbjct 2076 AATGTAATATTCAGATGTATAGTATATCT 2104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102208309620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5