BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475866
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67645.1 | Symbols: | pseudogene, hypothetical protein | ch... 939 0.0
AT1G67610.1 | Symbols: | pseudogene, hypothetical protein | ch... 935 0.0
> AT1G67645.1 | Symbols: | pseudogene, hypothetical protein |
chr1:25354910-25356112 FORWARD LENGTH=1203
Length=1203
Score = 939 bits (508), Expect = 0.0
Identities = 736/842 (87%), Gaps = 31/842 (4%)
Strand=Plus/Plus
Query 33 CGAGAAATCGAT-CCCTCTTCCGTCTCTAGAGTCGATTAG-GTCAAAGACTAGTAAGATC 90
||||||| |||| ||||||||||||||||||||||||| | |||| | ||||||||| ||
Sbjct 368 CGAGAAAACGATCCCCTCTTCCGTCTCTAGAGTCGATT-GCGTCAGATACTAGTAAGGTC 426
Query 91 AAGCGTGTGGGAGATAGAAAATTTGAAAGGG-ATGATAGTGG--C----TGTA-T----- 137
| |||||||||||||||| ||||||||||| || ||| ||| | | || |
Sbjct 427 AGGCGTGTGGGAGATAGAGTATTTGAAAGGGAAT-ATAATGGCCCGGAATATAGTGCCCG 485
Query 138 T-TT-CGA-TGAGCTGAGTTCTGATGTTGTGAGGGGCCTTTTGTGGGTAGACAAGAGTGG 194
| || | | ||| |||| || |||| ||||||||||||||||||||||||| |||||||
Sbjct 486 TGTTGCCACTGATCTGACTTGTGATACTGTGAGGGGCCTTTTGTGGGTAGACGAGAGTGG 545
Query 195 ATCAGAGTACGTTGTGGTGTGGTTCTTTGACCTTCCTGGCCACGCTTATATAAGCTTTTG 254
| |||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 546 AACAGATTACGTTGTGGTGTGGTTCTTCGACCTCCCTGGCCACTCTTATATAAGCTTTTG 605
Query 255 CAAGAAAGGGGATACTCAATACACTGACATTCCTCTGTATTACCCAGACGACCACTGGTT 314
|||||||||||| ||||| ||||||||||||||||||| || || ||||| ||||| ||
Sbjct 606 CAAGAAAGGGGACACTCATTACACTGACATTCCTCTGTTTTTCCGAGACGCCCACTTTTT 665
Query 315 GAACGGCTTATCTTATATGGTACTAGGGCGTGAC-CGTCTTTATATCTCGACAAGTCGTC 373
| | |||||||||||||||||||| |||||| || | |||||||||||||||||||||||
Sbjct 666 GGATGGCTTATCTTATATGGTACTGGGGCGTTACTC-TCTTTATATCTCGACAAGTCGTC 724
Query 374 GTTATATTCAAGTCCTAGATCTCTCTGGACCGCAAGGTTTCTTCAAGGACATCACCGAGG 433
||| | || ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 725 GTTTTGTTAAAGTCCTAGATCTGTCTGGACCGCAAGGTTTCTTCAAGGACATCACCGAGG 784
Query 434 G---CAAACCATTCCCAATGCTTTCTCGTTATCAATCATGGGATTCTAGCATTGCGGTTA 490
| ||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 785 GTAATAAACCATTCTCAATGCTTTCTCGTTATCACTCGTGGGATTCTAGCATTGCTGTTA 844
Query 491 CAACCTCAGGAGAGGTTTTGTTGGTGGAGAGTGATCCATGCCAGAGGAACTGCTTCCGCG 550
||||||| ||||||||||||||||| |||||| ||||||| |||||| ||||||||||||
Sbjct 845 CAACCTCTGGAGAGGTTTTGTTGGTTGAGAGTAATCCATGGCAGAGGGACTGCTTCCGCG 904
Query 551 TCTACAAG-AAGAATCTTAATGTAAAAGACCCAGATT-CTGCCAGCAACACGGTTCGTGA 608
|||||||| | | ||| ||||||| || |||||||| | ||| || |||| |||| |||
Sbjct 905 TCTACAAGTATG-ATCCTAATGTAGAACTCCCAGATTAC-GCCTGCCACACTGTTCTTGA 962
Query 609 AGTAT-ATTCTCTTGATGGTGAGGCTCTGCTTCTTGACTTGGGTTTTACTGTGCCTGCTA 667
|| | ||||||||| ||||||||| |||||||||||||||||||| ||| | |||||||
Sbjct 963 GGT-TGATTCTCTTGGTGGTGAGGCCCTGCTTCTTGACTTGGGTTTCACTATACCTGCTA 1021
Query 668 ACGATACCCTTGGTATCGAACCAGACTCCATCTATTTCACCCGTCACTACCGTCCCTGCC 727
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 ACGAAACCCTTGGTATCGAACCAGACTCCATCTATTTCACCCGTCACTACCGTCCCTGCC 1081
Query 728 AATGCTCACCTTGTGACCTTGACATCTGTGTGTTCAATCTTGTAACCAAGTCCCTCAAAC 787
||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1082 AATGCAGACCTCGTGACCTTGACATCTGTGTGTTCAATCTTGTAACAAAGACCCTCAAAC 1141
Query 788 GCTTTCCTGGTCTTGACGACATGAATCTCATGGATGCTCGATGGTTTCTCCCTGGGAATT 847
||||||||| ||||||||||||| ||| |||||||||||||||||||||| || ||||
Sbjct 1142 GCTTTCCTGCTCTTGACGACATGTCTCTTATGGATGCTCGATGGTTTCTCCATGCCAATT 1201
Query 848 AA 849
||
Sbjct 1202 AA 1203
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 GGAGCTCGTCGGATCTTCAAGGTTTTAA 28
||||||||||||||||||||||||||||
Sbjct 124 GGAGCTCGTCGGATCTTCAAGGTTTTAA 151
> AT1G67610.1 | Symbols: | pseudogene, hypothetical protein |
chr1:25339036-25340241 REVERSE LENGTH=1206
Length=1206
Score = 935 bits (506), Expect = 0.0
Identities = 729/832 (88%), Gaps = 33/832 (4%)
Strand=Plus/Plus
Query 33 CGAGAAATCGAT-CCCTCTTCCGTCTCTAGAGTCGATTAG-GTCAAAGACTAGTAAGATC 90
||||||| |||| ||||||||||||||||||||||||| | |||| | ||||||||| ||
Sbjct 371 CGAGAAAACGATCCCCTCTTCCGTCTCTAGAGTCGATT-GCGTCAGATACTAGTAAGGTC 429
Query 91 AAGCGTGTGGGAGATAGAAAATTTGAAAGGG-ATGATAGTGG--C----TGTA-T----- 137
| |||||||||||||||| ||||||||||| || ||| ||| | | || |
Sbjct 430 AGGCGTGTGGGAGATAGAGTATTTGAAAGGGAAT-ATAATGGCCCGGAATATAGTGCCCG 488
Query 138 T-TT-CGA-TGAGCTGAGTTCTGATGTTGTGAGGGGCCTTTTGTGGGTAGACAAGAGTGG 194
| || | | ||| |||| || |||| ||||||||||||||||||||||||| |||||||
Sbjct 489 TGTTGCCACTGATCTGACTTGTGATACTGTGAGGGGCCTTTTGTGGGTAGACGAGAGTGG 548
Query 195 ATCAGAGTACGTTGTGGTGTGGTTCTTTGACCTTCCTGGCCACGCTTATATAAGCTTTTG 254
| |||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 549 AACAGATTACGTTGTGGTGTGGTTCTTCGACCTCCCTGGCCACTCTTATATAAGCTTTTG 608
Query 255 CAAGAAAGGGGATACTCAATACACTGACATTCCTCTGTATTACCCAGACGACCACTGGTT 314
|||||||||||| ||||| ||||||||||||||||||| || || ||||| ||||| ||
Sbjct 609 CAAGAAAGGGGACACTCATTACACTGACATTCCTCTGTTTTTCCGAGACGCCCACTTTTT 668
Query 315 GAACGGCTTATCTTATATGGTACTAGGGCGTGAC-CGTCTTTATATCTCGACAAGTCGTC 373
| | |||||||||||||||||||| |||||| || | |||||||||||||||||||||||
Sbjct 669 GGATGGCTTATCTTATATGGTACTGGGGCGTTACTC-TCTTTATATCTCGACAAGTCGTC 727
Query 374 GTTATATTCAAGTCCTAGATCTCTCTGGACCGCAAGGTTTCTTCAAGGACATCACCGAGG 433
||| | || ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 728 GTTTTGTTAAAGTCCTAGATCTGTCTGGACCGCAAGGTTTCTTCAAGGACATCACCGAGG 787
Query 434 G---CAAACCATTCCCAATGCTTTCTCGTTATCAATCATGGGATTCTAGCATTGCGGTTA 490
| ||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 788 GTAATAAACCATTCTCAATGCTTTCTCGTTATCACTCGTGGGATTCTAGCATTGCTGTTA 847
Query 491 CAACCTCAGGAGAGGTTTTGTTGGTGGAGAGTGATCCATGCCAGAGGAACTGCTTCCGCG 550
||||||| ||||||||||||||||| |||||| ||||||| |||||| ||||||||||||
Sbjct 848 CAACCTCTGGAGAGGTTTTGTTGGTTGAGAGTAATCCATGGCAGAGGGACTGCTTCCGCG 907
Query 551 TCTACAAG-AAGAATCTTAATGTAAAAGACCCAGATT-CTGCCAGCAACACGGTTCGTGA 608
|||||||| | | ||| ||||||| || |||||||| | ||| || |||| |||| |||
Sbjct 908 TCTACAAGTATG-ATCCTAATGTAGAACTCCCAGATTAC-GCCTGCCACACTGTTCTTGA 965
Query 609 AGTAT-ATTCTCTTGATGGTGAGGCTCTGCTTCTTGACTTGGGTTTTACTGTGCCTGCTA 667
|| | ||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct 966 GGT-TGATTCTCTTGGTGGTGAGGCCCTGCTTCTTGACTTGGGTTTCACTATGCCTGCTA 1024
Query 668 ACGATACCCTTGGTATCGAACCAGACTCCATCTATTTCACCCGTCACTACCGTCCCTGCC 727
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 ATGATACCCTTGGTATCGAACCAGACTCCATCTATTTCACCCGTCACTACCGTCCCTGCC 1084
Query 728 AAT-GCTCACCTTGTGACCTTGACATCTGTGTGTTCAATCTTGTAACCAAGTCCCTCAAA 786
||| | |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1085 AATTG-TCACCTCGTGACCTTGACATCTGTGTCTTCAATCTTGTAACCAAGACCCTCAAA 1143
Query 787 CGCTTTCCTGGTCTTGACGACATGAATCTCATGGATGCTCGATGGTTTCTCC 838
|||||||||| || |||||||||| ||| ||||||||||||||||||||||
Sbjct 1144 CGCTTTCCTGTTCCTGACGACATGTCTCTTATGGATGCTCGATGGTTTCTCC 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5