BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475871
Length=2162
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67680.1 | Symbols: | SRP72 RNA-binding domain | chr1:25365... 3068 0.0
AT1G67650.1 | Symbols: | SRP72 RNA-binding domain | chr1:25359... 2447 0.0
> AT1G67680.1 | Symbols: | SRP72 RNA-binding domain | chr1:25365756-25368526
REVERSE LENGTH=2263
Length=2263
Score = 3068 bits (1661), Expect = 0.0
Identities = 2036/2210 (92%), Gaps = 54/2210 (2%)
Strand=Plus/Plus
Query 1 GACAAAACTCTCGAAGCTTGGATCCCG-TTT-T----GCAGCCATGGCTCCGAAATCGAA 54
||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 20 GACAAAACTCTCGAAGCTTGGATCCCGATTTCTCCAAGCAGCCATGGCTCCGAAATCGAA 79
Query 55 AGAAAAATCCAAAACATC-AACTTCACAACCTCCTCTAGCAATCGAAGATCTCTTCAGTT 113
|||||||||||||||||| || ||||||||| |||| |||||||||||||||||||| ||
Sbjct 80 AGAAAAATCCAAAACATCGAA-TTCACAACCACCTCCAGCAATCGAAGATCTCTTCACTT 138
Query 114 CCCTCAATGGTCATATCCAGGGAT-CTGAATTTGAAGAAGCCGTCAAGGTCGCAGATAAA 172
||||| | ||||| || |||| || ||| ||||||||||||||||||||| ||| ||
Sbjct 139 CCCTCCACCAACATAT-CAAGGATACTAAATATGAAGAAGCCGTCAAGGTCGCTGATCAA 197
Query 173 GTTTTGTCGATTTTACCTA-C--T---GAT--GA--GGATGC---G--AT--C-C-GAT- 212
|||||||||||| |||||| | | ||| || ||||| | | | | |||
Sbjct 198 GTTTTGTCGATTGTACCTACCGATGAGGATGCGATCCGATGCAAAGTTGTGGCTCTGATA 257
Query 213 ---G-C-A-AAGTT-G-TG--GCTCTGATAAAAGACGATAAGATCGATGGTGCTCTCTCC 262
| | | ||||| | || ||| || ||||||| ||||||| ||||||||||||||
Sbjct 258 AAAGACGATAAGTTCGATGATTATCTAATCAAAGACGTTAAGATCAATGGTGCTCTCTCC 317
Query 263 GTCATTAGCTCGTTCCAGAAGCTTCCAATCGATCTAGGGTTTCAAAATGCGTATTGTTTA 322
||||||| |||||||||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct 318 GTCATTAACTCGTTCCAGAAGCTTCCAATCGATCTAGGTTTTCACAAGGCGTATTGCTTA 377
Query 323 TACCGTCTAAACAAGTTAGATGAGGCGTTGGTGTGTTTAAAAGGTCTCGAGAGAGATTCA 382
|||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 378 TACCGTGTAAACAAGCTAGATGAGGCTTTGGTGTGTTTAAAAGGTCTCGAGAGAGATACA 437
Query 383 GATACTTTGCTTTTGGAGTCTCAGATTTTGTACCGTTTGGGGAAAGCAGATGCTTGTGTG 442
||||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 438 GATACTTTGGTTTTGGAGGCTCAGATTTTGTACCGTTTGGGGAAGGCAGATGCGTGTGTG 497
Query 443 GATGTGTGTCAGAAACTGAGCAAGTCGGAGATTGAGTCGTTAGAGATCAATTTAGTCG-C 501
||||||| ||||||||||| |||||| |||||||| |||||||| | |||||||||| |
Sbjct 498 GATGTGTATCAGAAACTGACCAAGTCCCAGATTGAGACGTTAGAGGTTAATTTAGTCGCC 557
Query 502 GGCGTTGATTACAGCTGGAAAAGCTTCTCAGGTGCCA-AAAGCATTGGAGGGTTTGAAGA 560
|| ||||||| ||||||||||||||||||| ||| || ||| |||||||| |||||||||
Sbjct 558 GG-GTTGATTTCAGCTGGAAAAGCTTCTCAAGTG-CAGAAAACATTGGAGAGTTTGAAGA 615
Query 561 TCAAACCAACTAGTACTTATGACTTGGCTTATAATACTGCTTGCTCTTTGATTGAAAACA 620
||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 616 TCAAACCAACTAGTAGTTTTGAGTTGGCTTATAATACTGCTTGCTCTTTGATTGAAAACA 675
Query 621 ATAACTATGCCGATGCTGAACAACTTTTGCTCACTGCCAAGAGAATTGGTCAGGAAACCC 680
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 676 ATAACTATGCTGATGCTGAACAACTTTTGCTCACTGCCAGGAGAATTGGTCAGGAAACCC 735
Query 681 TCACTGAAGATGAC-T-G--TT--CTGATG-AGTATATCGAGACTGAGCTGGCCCCAATT 733
||| ||| || ||| | | || | |||| || | || |||| ||||||||||||||||
Sbjct 736 TCAATGATGACGACATCGCTTTAACCGATGAAG-AAATTGAGATTGAGCTGGCCCCAATT 794
Query 734 TCTGTTCAATTAGCATATGTTCAACAGGTCCTTGGGCAAACTCAAGAATCCACCAGCTCT 793
||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 795 GCTGTTCAATTAGCATATGTCCAACAGATCCTTGGACAAACTCAAGAATCCACCAGCTCT 854
Query 794 TATGTAGATATCATTAAACGAAATCTGGCTGATGAACCTTCACTTGCTGTTGCTGTGAAC 853
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 855 TATGTAGATTTCATTAAACGAAATCTGGCTGATGAACCTTCACTTGCTGTTGCTGTAAAC 914
Query 854 AACCTTGTTGCCTCGAAAGGTTCCAAAGATATTTCTGATGGCTTGAGGAAGTTTGATCGG 913
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 915 AACCTTGTTGCCTTGAAAGGTTTCAAAGATATTTCTGATGGCTTGAGGAAGTTTGATCTG 974
Query 914 CTGAAAGAAAAAGACTCCCAAAATTTTCAGCTTTCTCAAGAACTTGATGCAAAGCTTTCA 973
|||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 975 CTGAAAGACAAAGACTCCCAAACTTTTCAGCTTTCTCAAGCACTTGATGCAAAGCTTTCA 1034
Query 974 CAGAAAAATAAGGAGGCTATATATGCCAATCGCGTCCTTCTACTCCTCCATGCAAATAAA 1033
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 CAGAAACATAAGGAGGCTATATATGCCAATCGCGTCCTTCTACTCCTCCATGCAAATAAG 1094
Query 1034 ATGGATCAGGCACGAGAACTTTCTGCTGCACTGCCGGGTATGTTTCCTGAGAGTGTTATT 1093
|||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 1095 ATGGATCAGGCACGAGAACTTTGTGCTGCACTGCCCGGTATGTTTCCTGAGAGTATTATT 1154
Query 1094 CCTACATTGCTTCAAGCTGCTGTTTTGGTGAGAGAAAACAAGGCTGCCAAAGCTGAAGAA 1153
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1155 CCTACATTGCTTCAAGCTGCCGTTTTGGTGAGAGAAAACAAGGCTGCCAAAGCTGAAGAA 1214
Query 1154 CTTCTGGGACAGTGTGCCGAAAAATTTCCGGAAAAGTCTAAGTTGGTTCTCTTGGCCAGG 1213
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1215 CTTTTGGGACAGTGTGCCGAAAAATTCCCGGAAAAGTCTAAGTTGGTTCTCTTGGCCAGG 1274
Query 1214 GCACAAATTGCTGCGTCTGCCAGTCATCCTCATGTAGCAGCAGAGTCCCTGTCCAAAATA 1273
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1275 GCACAAATTGCTGCTTCTGCCAGTCATCCTCATGTAGCAGCAGAGTCCCTATCCAAAATA 1334
Query 1274 CCTGATATTCAGCATTTGCCTGCAACTGTTGCCACCATTGTCGCCCTCAAAGAGCGTGCT 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 CCTGATATTCAGCATTTGCCTGCAACTGTTGCCACCATTGTCGCCCTCAAAGAGCGTGCT 1394
Query 1334 GGGGACAATGATGGTGCTGCTGCTGTTCTTGACTCAGCAATTAAATGGTGGTCGAATTCG 1393
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1395 GGAGACAATGATGGTGCTGCTGCTGTTCTTGACTCAGCAATTAAATGGTGGTCAAATTCG 1454
Query 1394 ATGACTGAGAGCAATAAGCTTAGTGTAATGATGCCGGAGGCTGCTGCCTTCAAGCTCAGG 1453
||||| ||||||| ||||||||| ||| ||||||| |||||||||||||||||||| |||
Sbjct 1455 ATGACCGAGAGCAGTAAGCTTAGGGTATTGATGCCAGAGGCTGCTGCCTTCAAGCTAAGG 1514
Query 1454 CATGGTCAAGAAGAGGAGGCTTCACGGCTATACGAGGAGATTGTGAAAAACCATAATAGC 1513
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1515 CATGGTCAAGAAGAGGAGGCTTCACGGCTATACGAGGAAATTGTGAAAAACCACAATAGC 1574
Query 1514 ACAGATGCTCTGGTTGGTCTTGTGACTACACTTGCTCGTGTCAATGTCGAGAAAGCAGAA 1573
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1575 ACAGATGCTCTGGTTGGTCTTGTGACTACACTTGCTCGTGTCAATGTTGAGAAAGCAGAA 1634
Query 1574 ACTTATGAGAAACAGCTTAAGCCCTTACCAGGTTTGAAGGCTGTTGATGTGGATAACCTA 1633
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1635 AGTTATGAGAAACAGCTTAAGCCCCTACCAGGTTTGAAGGCTGTTGATGTGGATAAACTA 1694
Query 1634 GAAAAGACCTCTGGTGCAAAACCCATTGAAGGCTCTGCTGCTTCATCGAGTCaggaagaa 1693
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1695 GAAAAGACCTATGGTGCAAAACCCATTGAAGGCGCTGCTGCTTCATCGAGTCAGGAAGAA 1754
Query 1694 gtgaagaaagagaaggcgaagaggaagaggaagagaaagCCAAAGTATCCCAAAGGATTC 1753
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 GTGAAGAAAGAAAAGGCGAAGAGGAAGAGGAAGAGAAAGCCAAAGTATCCCAAAGGATTT 1814
Query 1754 GATCCAGCTAACCCAGGTCCACCTCCAGACCCTGAAAGGTGGCTTCCCAGAAGGGAAAGG 1813
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1815 GATCCGGCAAACCCAGGTCCACCCCCAGACCCTGAAAGGTGGCTTCCCAGAAGGGAAAGG 1874
Query 1814 TCAAGTTACAGACCCAAGAGGAAGGACAAGCGAGCAGCTCAAATCCGTGGCTCGCAGGGT 1873
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 TCAAGTTACAAACCCAAGAGGAAGGACAAGCGAGCAGCTCAAATCCGTGGCTCGCAGGGT 1934
Query 1874 GCGGTGACGAAGGATAAGCAAGAAGCATCTCCTTCAACTTCAAAGTCAAACCAAGCGGCG 1933
|||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1935 GCGGTGACCAAGGATAAACAAGAAGCAGCTCCTTCAACTTCAAAGTCAAACCAAGTGGCC 1994
Query 1934 AGTTCTAAAGCCAATGCAGCTGCGCCTTCTTCAAAGGCCTCGAAAAAGAAGTCTAGAAGA 1993
|||||||||| |||||| |||||||||| || |||||||| ||||||||||||||||||
Sbjct 1995 AGTTCTAAAGGGAATGCACCTGCGCCTTCCTCTAAGGCCTCAAAAAAGAAGTCTAGAAGA 2054
Query 1994 TGAGTGAAACAACCCTTTAAGATTGTTTCATCTGTTCTGAGAAAACAAAAACAAAGAGTA 2053
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 TGAACGAAACAACCCTTTAAGATTGTTTCATCTGTTCTGAGAAAACAAAAACAAAGAGTA 2114
Query 2054 CTTGGCCCCAAAATTTCCATTGTTCtttttttttttGGATTGATCAAGTTTTAGTTGTCT 2113
||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 2115 CTTAGCCCCAAAATTTCCATTGTTCTTTTTCTTTTTGGATTCATCAAGTTTTAGTTGTCT 2174
Query 2114 TGACCCATTTAAGATTTTGGTTCATTTCTCGTTTGCGT-GTCCTGAATTC 2162
|||||||||||||||||||||| ||||||||||||| | | |||||||||
Sbjct 2175 TGACCCATTTAAGATTTTGGTTAATTTCTCGTTTGCATTG-CCTGAATTC 2223
> AT1G67650.1 | Symbols: | SRP72 RNA-binding domain | chr1:25359659-25362395
REVERSE LENGTH=2129
Length=2129
Score = 2447 bits (1325), Expect = 0.0
Identities = 1780/1989 (89%), Gaps = 73/1989 (4%)
Strand=Plus/Plus
Query 81 AACCTC--CTCTAGCAATCGAAGATCTCTTCAGTTCCCTCAATGGTCATATCCAGGGAT- 137
|||||| ||| |||||||||||||||||||| ||||||| | ||||| || ||||
Sbjct 30 AACCTCGACTCCAGCAATCGAAGATCTCTTCACTTCCCTCCACAAACATAT-CAAGGATA 88
Query 138 CTGAATTTGAAGAAGCCGTCAAGGTCGCAGATAAAGTTTTGTCGATTTTACCTA-C--T- 193
|| ||| ||||||||||||||||||||| ||| |||||||||||||| |||||| | |
Sbjct 89 CTAAATATGAAGAAGCCGTCAAGGTCGCTGATCAAGTTTTGTCGATTGTACCTACCGATG 148
Query 194 --GAT--GA--GGATGC---G--AT--C-C-GAT----G-C-A-AAGTT-G-TG--GCTC 227
||| || ||||| | | | | ||| | | | ||||| | || ||
Sbjct 149 AGGATGCGATCCGATGCAAAGTTGTGGCTCTGATAAAAGACGATAAGTTCGATGATTATC 208
Query 228 TGATAAAAGACGATAAGATCGATGGTGCTCTCTCCGTCATTAGCTCGTTCCAGAAGCTTC 287
| || ||||||| ||||||| ||||||||||||||||||||| |||| | |||
Sbjct 209 TAATCAAAGACGTTAAGATCAATGGTGCTCTCTCCGTCATTAACTCG-T--------TTC 259
Query 288 CAATCGATCTAGGGTTTCAAAATGCGTATTGTTTATACCGTCTAAACAAGTTAGATGAGG 347
||||||||||||| ||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 260 CAATCGATCTAGGTTTTCACAAGGCGTATTGTTTATACCGTGAAAACAAGTTAGATGAGG 319
Query 348 CGTTGGTGTGTTTAAAAGGTCTCGAGAGAGATTCAGATACTTTGCTTTTGGAGTCTCAGA 407
| ||||||||||||||||||||||||||||| ||| | ||||||||||| ||| ||||||
Sbjct 320 CTTTGGTGTGTTTAAAAGGTCTCGAGAGAGAGTCAAAGACTTTGCTTTTAGAGGCTCAGA 379
Query 408 TTTTGTACCGTTTGGGGAAAGCAGATGCTTGTGTGGATGTGTGTCAGAAACTGAGCAAGT 467
||||| || |||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 380 TTTTGAACTGTTTGGGGAAAGTAGATGCTTGTGTGGATGTGTATCAGAAACTGAACAAGT 439
Query 468 -CGGAGATTGAGTCGTTAGAGATCAATTTAGTCGCGGCGTTGATTACAGCTGGAAAAGCT 526
||| |||| | | | ||||| |||||||||||||||||||||||| ||| ||||||||
Sbjct 440 CCGG-GATTAAATTGATAGAGGTCAATTTAGTCGCGGCGTTGATTAGAGCCGGAAAAGC- 497
Query 527 TCTCAGGTGCCAAAAGCATTGGAGGGTTTGAAGATCAAACCAACTAGTACTTATGACTTG 586
| || | | ||| ||||||| |||||||||||| ||| || | ||||||| | |||
Sbjct 498 T-TC---T--C--AAGTATTGGAGAGTTTGAAGATCAGACCTACGACTACTTATCAATTG 549
Query 587 GCTTATAATACTGCTTGCTCTTTGATTGAAAACAATAACTATGCCGATGCTGAACAACTT 646
|||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 550 GCTTATAATACTGCTTGCTCTTTGATCGAAAACAGTAACTATGTTGATGCTGAACAACTT 609
Query 647 TTGCTCACTGCCAAGAGAATTGGTCAGGAAACCCTCACTGAAGATGACTGTTCTGATGAG 706
||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||
Sbjct 610 TTGCTCACTGCCATGAGAATTGGTCAGGAAACCCTCACTGAGGGCGACTATTCTGATGAT 669
Query 707 TATATCGAGACTGAGCTGGCCCCAATTTCTGTTCAATTAGCATATGTTCAACAGGTCCTT 766
|||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 670 TATATCGAGACTCAGCTAGCCCCAATTTCTGTTCAATTAGCATATGTCCAACAGGTCCTT 729
Query 767 GGGCAAACTCAAGAATCCACCAGCTCTTATGTAGATATCATTAAACGAAATCTGGCTGAT 826
|| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 730 GGACAAACTCAAGAATCAAAGAGCTCTTATGTAGATATCATTAAACGAAATCTGGCTGAT 789
Query 827 GAACCTTCACTTGCTGTTGCTGTGAACAACCTTGTTGCCTCGAAAGGTTCCAAAGATATT 886
||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 790 GAA---TCACTTGCTCTTGCTGTGAACAACCTTGTTGCCTTGAAAGGTTCCAAAGATATT 846
Query 887 TCTGATGGCTTGAGGAAGTTTGATCGGCTGAAAGAAAAAGACTCCCAAAATTTTCAGCTT 946
||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 847 TCTGATGGCTTGAGGAAGTTTGATCTGCTGAAAGACAAAGACTCACAAAATTTTCAGCTT 906
Query 947 TCTCAAGAACTTGATGCAAAGCTTTCACAGAAAAATAAGGAGGCTATATATGCCAATCGC 1006
||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 907 TCTCAAGAACTTGATGCTAAGCTTTCACATAAACATAAGGAAGCTATATATGCCAATCGC 966
Query 1007 GTCCTTCTACTCCTCCATGCAAATAAAATGGATCAGGCACGAGAACTTTCTGCTGCACTG 1066
||||||||||| |||||||||||||| ||||||||||||||||| |||| |||| |||||
Sbjct 967 GTCCTTCTACTTCTCCATGCAAATAAGATGGATCAGGCACGAGAGCTTTGTGCTACACTG 1026
Query 1067 CCGGGTATGTTTCCTGAGAGTGTTATTCCTACATTGCTTCAAGCTGCTGTTTTGGTGAGA 1126
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CCCGGTATGTTTCCTGAGAGTGTTATTCCTACATTGCTTCAAGCTGCTGTTTTGGTGAGA 1086
Query 1127 GAAAACAAGGCTGCCAAAGCTGAAGAACTTCTGGGACAGTGTGCCGAAAAATTTCCGGAA 1186
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1087 GAAAACAAGGCTGCTAAAGCTGAAGAACTTCTGGGACAGTGTGCCGAAAACTTCCCGGAA 1146
Query 1187 AAGTCTAAGTTGGTTCTCTTGGCCAGGGCACAAATTGCTGCGTCTGCCAGTCATCCTCAT 1246
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1147 AAGTCTAAGTTGGTTCTCTTGGCCAGGGCACAAATTGCCGCTTCTGCCAGTCATCCTCAT 1206
Query 1247 GTAGCAGCAGAGTCCCTGTCCAAAATACCTGATATTCAGCATTTGCCTGCAACTGTTGCC 1306
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1207 GTAGCAGCAGAGTCCCTGTCCAAAATACCTGATATTCAGCACTTGCCTGCAACTGTTGCC 1266
Query 1307 ACCATTGTCGCCCTCAAAGAGCGTGCTGGGGACAATGATGGTGCTGCTGCTGTTCTTGAC 1366
|||||||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct 1267 ACCATTGTCGCCCTCAGAGAGCGAGCTGGAGACAATGATGGTGCTACTGCTGTTCTTGAC 1326
Query 1367 TCAGCAATTAAATGGTGGTCGAATTCGATGACTGAGAGCAATAAGCTTAGTG-TAATGAT 1425
|||||||||| |||||||||| |||| ||||| || ||||||| |||||| | || ||||
Sbjct 1327 TCAGCAATTAGATGGTGGTCGGATTCTATGACCGATAGCAATATGCTTAG-GATATTGAT 1385
Query 1426 GCCGGAGGCTGCTGCCTTCAAGCTCAGGCATGGTCAAGAAGAGGAGGCTTCACGGCTATA 1485
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 GCCGGTGGCTGCTGCCTTCAAGCTCAGGCATGGTCAAGAAGAGGAGGCTTCACGGCTATA 1445
Query 1486 CGAGGAGATTGTGAAAAACCATAATAGCACAGATGCTCTGGTTGGTCTTGTGACTACACT 1545
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1446 CGAGGAGATTGTGAAAAACCATAATAGCACAGATGCTTTGGTTGGTCTTGTGACTACTCT 1505
Query 1546 TGCTCGTGTCAATGTCGAGAAAGCAGAAACTTATGAGAAACAGCTTAAGCCCTTACCAGG 1605
||||||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||
Sbjct 1506 TGCTCGTGTCAATGTTGAGAAAGCAGAAGCTTACGAGAAACAGCTTAAGCCCCTACCAGG 1565
Query 1606 TTTGAAGGCTGTTGATGTGGATAACCTAGAAAAGACCTCTGGTGCAAAACCCATTGAAGG 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 TTTGAAGGCTGTTGATGTGGATAACCTAGAAAAGACCTCTGGTGCAAAACCCATTGAAGG 1625
Query 1666 C-T--CTGCTGCTTCATCGAGTCaggaagaagtgaagaaagagaaggcgaagaggaagag 1722
| | |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1626 CATTTCTGCTGCTTCATTGAGTCAGGAAGAAGTGAAGAAAGAGAAGGTGAAGAGGAAGAG 1685
Query 1723 gaagagaaagCCAAAGTATCCCAAAGGATTCGATCCAGCTAACCCAGGTCCACCTCCAGA 1782
|| || ||||||||||||||||||||||||| | ||| |||||||| |||| ||
Sbjct 1686 -AA-AG----CCAAAGTATCCCAAAGGATTCGATCTGGAAAACTCAGGTCCAACTCCGGA 1739
Query 1783 CCCTGAAAGGTGGCTTCCCAGAAGGGAAAGGTCAAGTTACAGACCCAAGAGGAAGGACAA 1842
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1740 CCCTGAGAGGTGGCTTCCCAGAAGGGAAAGGTCAAGTTACAGACCCAAGAGAAAGGACAA 1799
Query 1843 GCGAGCAGCTCAAATCCGTGGCTCGCAGGGTGCGGTGACGAAGGATAAGCAAGAAGCATC 1902
||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||| | |
Sbjct 1800 GCGAGCAGCTCAAATCCGTGGCTCGCAAGGTGCCTTGACGAAGGTTAAACAAGAAGAAGC 1859
Query 1903 TCCTTCAACTTCAAAGTCAAACCAAGCGGCGAGTTCTAAAGCCAATGCAGCTGCGCC-TT 1961
||||||||| || |||||||| |||||||| | |||||||||||||||||||| ||| ||
Sbjct 1860 TCCTTCAACCTCTAAGTCAAAACAAGCGGCCATTTCTAAAGCCAATGCAGCTG-GCCCTT 1918
Query 1962 CTTCA---AAGGCCTCGAAAAAGAAGTCTAGAAGATGAGTGAAACAACCCTTTAAGATTG 2018
|||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1919 CTTCCTCTAAGGCCTCGAAAAAGAAGTCTAGAAGATGAACGAAACAACCCTTTAAGATCG 1978
Query 2019 TTTCATCTG 2027
|||||||||
Sbjct 1979 TTTCATCTG 1987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107228364120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5