BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475877
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67730.1 | Symbols: YBR159, KCR1, ATKCR1 | beta-ketoacyl red... 2154 0.0
> AT1G67730.1 | Symbols: YBR159, KCR1, ATKCR1 | beta-ketoacyl reductase
1 | chr1:25391460-25393610 FORWARD LENGTH=1418
Length=1418
Score = 2154 bits (1166), Expect = 0.0
Identities = 1313/1384 (95%), Gaps = 10/1384 (1%)
Strand=Plus/Plus
Query 1 AAATTAAATaaagaaaagagagagaagaaacagagagagTAGTTAATTCCGGTGGTTTTC 60
||| |||| |||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 26 AAAATAAACAAAGGAGAGAGACAGAAGAAACAGAGAGAGTAGTTAATTCCGGTGGTTTTC 85
Query 61 TGCTCATCTACTTCTATCCACCTTCGTCCCTTCCGCCCCAAAATTCAATtctctctt-ct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 86 TGCTCATCTACTTCTATCCACCTTCGTCCCTTCCGCCCCAAAATTCAATTCTCTCTTCCT 145
Query 120 tctctctctctctctTTCCTTAAAAACCCTAACTTTCCTCATCTCATCTCCAAAGTCTCA 179
| ||||||||| | | ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 146 T-TCTCTCTCT-T-TCTCCTTAAAAACTCTAACTTTACTCATCTCATCTCCAAAGTCTCA 202
Query 180 ACCTTTCTTCTCTCATGGAGATCTGTACTTACTTCAAATCACAACCCACTTGGCTCCTTA 239
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 203 ACCTTTCTTCTCTAATGGAGATCTGCACTTACTTCAAATCACAACCCACTTGGCTCCTCA 262
Query 240 TTCTCTTCGTTCTCGGGTCAATCTCAATCTTCAAATTCATCTTCACCCTCCTCAGATCTT 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 TTCTCTTCGTTCTGGGGTCAATCTCAATCTTCAAATTCATCTTCACCCTCCTCAGATCTT 322
Query 300 TCTACATCTACTTCCTCCGACCAGCCAAAAACCTCCGTCGTTACGGTTCATGGGCAATCA 359
||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 323 TCTACATCTACTTCCTCCGACCATCCAAAAACCTCCGCCGATACGGTTCATGGGCAATCA 382
Query 360 TCACCGGACCAACCGACGGAATCGGTAAAGCTTTCGCCTTTCAATTAGCCCAGAAAGGAC 419
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 383 TCACCGGACCAACAGACGGAATCGGTAAAGCTTTCGCCTTTCAGTTAGCCCAGAAAGGTC 442
Query 420 TTAACCTTATACTCGTTGCTCGTAATCCAGACAAGCTTAAAGATGTCTCTGAATCCATCA 479
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 443 TTAACCTTATACTCGTTGCTCGTAACCCAGACAAGCTCAAAGATGTCTCTGATTCCATCA 502
Query 480 GATCTAAGTATAGTCAAACTCAGATCTTGACTGTTGTGATGGATTTCTCTGGAGATATTG 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 503 GATCTAAGTATAGTCAAACTCAGATCTTGACCGTTGTGATGGATTTCTCTGGAGATATTG 562
Query 540 ATGAAGGTGTGAAACGGATTAAGGAGACTATTGAGGGTTTAGATGTTGGGATTTTGATTA 599
||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 563 ATGAAGGTGTGAAACGGATTAAGGAGAGTATTGAAGGATTAGATGTTGGGATTTTGATTA 622
Query 600 ATAATGCTGGCATGTCGTATCCTTATGCTAAGTATTTTCATGAGGTTGATGAAGAGTTGC 659
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 ATAATGCTGGCATGTCTTATCCTTATGCTAAGTATTTTCATGAGGTTGATGAAGAGTTGA 682
Query 660 TTAATAACTTGATTAAGATCAATGTTGAAGGAACTACTAAAGTTACTCAGGCTGTGTTGC 719
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 683 TCAATAACTTGATTAAGATCAATGTTGAAGGAACTACTAAAGTTACTCAAGCTGTGTTGC 742
Query 720 CTAATATGCTTCAGAGGAAGAAAGGTGCTATTATTAATATGGGTTCTGGTGCTTCTGCTC 779
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 743 CTAATATGCTTAAGAGGAAGAAAGGTGCTATTATTAATATGGGTTCTGGTGCTGCTGCTC 802
Query 780 TTATTCCTTCGTATCCTTTCTACTCTGTTTATGCTGGTGCTAAAACGTACGTGGATCAGC 839
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 803 TTATTCCTTCTTATCCTTTTTACTCTGTTTATGCTGGTGCTAAAACGTACGTGGATCAGT 862
Query 840 TCACTAAGTGTCTACATGTTGAGTACAAGAAGAGTGGAATTGATGTTCAATGCCAGGTTC 899
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 863 TCACAAAGTGTCTACATGTTGAGTATAAGAAGAGTGGGATTGATGTTCAATGCCAGGTTC 922
Query 900 CCTTGTATGTTGCAACAAAGATGACAAAAATAAGAAGAGCATCCTTCTTAGTTGCATCAC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 CCTTGTATGTTGCAACAAAGATGACAAAAATAAGAAGAGCATCCTTCTTAGTTGCATCAC 982
Query 960 CAGAGGGTTACGCAAAGGCAGCACTGCGTTTTGTAGGCTATGAAGCACAATGCACACCGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 CAGAGGGTTACGCAAAGGCAGCACTGCGTTTTGTAGGCTATGAAGCACAATGCACACCGT 1042
Query 1020 ACTGGCCTCACGCTCTCATGGGTGCAGTTGTCTCTGCATTACCCGAAAGCGTTTTTGAAT 1079
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1043 ACTGGCCTCACGCTCTCATGGGTGCAGTTGTCTCTGCATTGCCCGAAAGCGTTTTTGAAT 1102
Query 1080 CATTTAACATTAAGAGGTGCCTCCAGATTCGGAAGAAGGGTCTCCAAAAAGACTCCATGA 1139
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1103 CATTTAACATCAAGAGATGCCTCCAGATCCGGAAGAAGGGTCTCCAAAAAGACTCCATGA 1162
Query 1140 AAAAAGAATGAAACTTTGAGGTTTAAGTTACTGCTAAAAATTTC-TTCTTCTGAAGTTGT 1198
| |||||||||| ||| |||||||||||||| | || |||||| |||||||||||||||
Sbjct 1163 AGAAAGAATGAATCTTCCAGGTTTAAGTTACTACCAAGAATTTCCTTCTTCTGAAGTTGT 1222
Query 1199 TGGTTTCTTGAAAAGCTTCTGCTCTGAATCTTTTGTAAGACTTGTACGCTTTAGTTTTCG 1258
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1223 TGGTTTCTTGAAAAGCTTCTGTTCTGAATCTTTTGTAAGACTTGTACTCTTTAGTTTTCT 1282
Query 1259 AAGTTTCCG-TATTTTAAGATTCAAAACCCTAACGTACACGAATCATTTACATCCTCTCT 1317
|||||| |||||||||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 1283 AAGTTTTTTATATTTTAAGATTAAAAACCCTAACGTACACGAATAATTTACTTCCTCT-- 1340
Query 1318 GTTTCTATTTATTAATTTAAACAATGTTGTATTTGAATGTGATTT-GCGTATGGTTTGCG 1376
|||||||||||||||||||| || ||||||||| ||||||| ||| || |||||||||||
Sbjct 1341 GTTTCTATTTATTAATTTAAGCAGTGTTGTATT-GAATGTGTTTTTGCTTATGGTTTGCG 1399
Query 1377 TCTC 1380
||||
Sbjct 1400 TCTC 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5