BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475879
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67750.1 | Symbols: | Pectate lyase family protein | chr1:2... 2551 0.0
> AT1G67750.1 | Symbols: | Pectate lyase family protein | chr1:25401588-25403503
FORWARD LENGTH=1637
Length=1637
Score = 2551 bits (1381), Expect = 0.0
Identities = 1563/1648 (95%), Gaps = 23/1648 (1%)
Strand=Plus/Plus
Query 1 ATCACCAAACAAACAAACACATTCAAATCTCATAAACACATTAATAAGT-AAAATCCTCT 59
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1 ATCACCAAACAAACAAACACATTCAAATCTCATAAACACATTGATAAGTAAAAATCCTCT 60
Query 60 TGAGAGACAAGAATGAGAATGACACTTGTTCACTTGTCTCTCTCCCTCTTCTCATGTCTC 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAGAGACAAGAATGAGAATGACACTTGTTCACTTGTCTCTCTCCCTCTTCTCATGTCTC 120
Query 120 CTCCTTGTCCTTTCTCCGACCTTCATTGCCTCCACTCCCGTCTCCGACCCCGAACTCGTA 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CTCCTTGTCCTTTCTCCGACCTTCATTGCCTCCACTCCCGTCTCCGAACCCGAACTCGTA 180
Query 180 GTTCAAGAAGTTAACGAGAAGATTAATGCGTCTAGGAGGAATCTAGGCGTGCTCTCATGT 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTCAAGAAGTTAACGAAAAGATTAATGCGTCTAGGAGGAATCTAGGCGTGCTCTCATGT 240
Query 240 GGGACCGGAAATCCAATTGACGACTGTTGGAGATGCAACCCGAAATGGGAGAAAAACCGA 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GGGACCGGAAATCCAATTGACGACTGTTGGAGATGCGACCCGAAATGGGAGAAAAACCGA 300
Query 300 CAACAGCTAGCGGATTGCGCGATCGGGTTTGGGAAACACGCAATCGGTGGCCGTGACGGT 359
|||| | |||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 301 CAACGGTTAGCCGATTGCGCGATCGGGTTTGGCAAACACGCAATCGGTGGTCGTGACGGT 360
Query 360 AAAATCTACGTGGTGACTGACTCGAGTGACAAAGACGTGGTTAACCCTAAATCCGGAACC 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 AAAATCTACGTGGTGACTGACTCGAGTGACAAAGACGTGGTTAACCCTAAACCCGGAACC 420
Query 420 CTAAGACACGCAGTGATCCAAGACGAGCCGCTATGGATCATCTTCGCGCGTGACATGGTT 479
|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 CTTAGACACGCGGTGATCCAAGACGAGCCACTATGGATCATCTTCGCGCGTGACATGGTC 480
Query 480 ATAAAGCTAAAAGAAGAGCTCATCATGAACTCTTTCAAGACCATAGACGGCCGTGGAGCG 539
||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 481 ATAAAACTAAAAGAAGAGCTGATTATGAACTCTTTCAAGACTATAGACGGCCGTGGAGCG 540
Query 540 AGCGTCCACATTGCTGGTGGCGCGTGCATCACCGTCCAGTACGTGACCAACATCATCATC 599
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 AGCGTCCACATTGCTGGTGGCGCGTGTATCACCGTCCAGTACGTGACCAACATCATCATC 600
Query 600 CACGGTCTCAACATCCACGACTGTAAAAGGAAGGGGAATGCTTACGTTAGAGACTCTCCG 659
|||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 CACGGTGTTAACATCCATGACTGTAAAAGAAAGGGGAATGCTTACGTTAGAGACTCTCCG 660
Query 660 TCGCATTACGGGTGGAGGACGGCGTCTGATGGTGACGCCGTCTCGATTTTTGGTGGGTCA 719
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 661 TCGCATTATGGGTGGAGGACAGCGTCTGACGGTGACGCCGTCTCGATTTTTGGTGGCTCC 720
Query 720 CACGTGTGGGTAGACCATTGCTCGTTGTCTAACTGCGATGACGGTCTGATCGACGCCATT 779
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 721 CACGTGTGGGTAGACCATTGCTCGTTGTCCAACTGCGCTGACGGTCTGATAGACGCCATT 780
Query 780 CATGGATCAACGGCCATTACGATCTCTAATAACTATTTGACTCACCACAATAAAGTAATG 839
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 781 CATGGATCAACGGCCATTACTATCTCTAATAACTATTTGAGTCACCACAATAAAGTCATG 840
Query 840 CTTTTGGGACACAGTGATTCGTACACGAGAGACAAGAACATGCAAGTCACCATTGCCTTT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTTTGGGACACAGTGATTCGTACACGAGAGACAAGAACATGCAAGTCACCATTGCCTTT 900
Query 900 AATCACTTTGGGGAAGGTCTTGTTCAAAGAATGCCAAGATGTAGACATGGATATTTTCAT 959
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 AATCACTTTGGAGAAGGTCTTGTTCAGAGAATGCCAAGATGTAGACATGGATATTTTCAT 960
Query 960 GTGGTGAATAATGATTATACACATTGGCAAATGTATGCAATTGGTGGAAGTGCAGCTCCA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTGGTGAATAATGATTATACACATTGGCAAATGTATGCAATTGGTGGAAGTGCAGCTCCA 1020
Query 1020 ACGATTAACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAGGTG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACGATTAACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAGGTG 1080
Query 1080 ACTAAATACGAAGACGCACCACAAAGCAAATGGAAGAAATGGAACTGGAGATCAGAAGGT 1139
|||||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 1081 ACTAAATACGAAGATGCACCACGAAGCAAATGGAAGAAATGGAATTGGAGATCGGAAGGT 1140
Query 1140 GACTTGTTCCTAAACGGTGCGTTTTTTACGCCTTCGGGTGGAGGAGCTTCTTCAAGCTAT 1199
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1141 GATTTGTTCCTAAACGGTGCGTTTTTTACGCCTTCGGGTGGAGGAGCCTCTTCAAGCTAT 1200
Query 1200 GCAAAGGCTTCGAGTTTGTCGGCTAGACCGTCCTCATTAGTGGCTTCGGTCACGTCTAAT 1259
|| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 1201 GCTAAGGCTTCGAGTTTGTCGGCTAGACCGTCCTCATTGGTGGCTTCAGTCACGTCCAAT 1260
Query 1260 GCTGGTGCACTCTTTTGTAGAAAAGGATCTCGATGTTAATCCGATGCATCTTTTCAAATT 1319
||||||||||||||||||||||||||||| |||||||||||| || |||||||||||| |
Sbjct 1261 GCTGGTGCACTCTTTTGTAGAAAAGGATCACGATGTTAATCCAATCCATCTTTTCAAAAT 1320
Query 1320 TATATATATAATCCA---A-TCTAATTAATTAAAAAGATAAAGAAGAGGATGCATGTTGT 1375
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TATATATATAATCCATCCAATCTAATTAATTAAAAAGATAAAGAAGAGGATGCATGTTGT 1380
Query 1376 CCCTGGTATGTCAATTTTTCGTTACCCTTTAGTTTTTATT-AT-G-GGG-AGGGTTAAAG 1431
||||||||||||||||||||||||||||||||||||| || || | ||| ||||||||||
Sbjct 1381 CCCTGGTATGTCAATTTTTCGTTACCCTTTAGTTTTTTTTTATTGTGGGGAGGGTTAAAG 1440
Query 1432 TTGTAAGATGGATTTGATGTGTATACTAAAGTAATGTGTGGGTTCCCTTTGGACCAATGG 1491
| |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1441 TAGTAAGATGGATTCGATGTGTATACTAAAGTTATGTGTGGATTCCCTTTGGACCAATGG 1500
Query 1492 GTTTCTTTTAAACTTTTTGGAGTAGGGACCAATGTTTATGTTGTGGTGGGGATATGTATG 1551
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1501 GTTTCTTTAAAACTTTTTGGAGTAGGGACCAATGTTTATGTTGTGGTGGGGATA---ATG 1557
Query 1552 TAGTATGTACAATTGCTAAGCGAATATTGTTGATTTCTTATATTGTAATAAATTAAATCA 1611
| | ||||||||||||||||| ||||||||||||||||||| | | | | |||
Sbjct 1558 TC-T--GTACAATTGCTAAGCGATTATTGTTGATTTCTTATATA-T--TG--T-A--TCA 1606
Query 1612 ACATCTTAATTATCAACATCCGTGTGTT 1639
||||||||||||| ||||||||||||||
Sbjct 1607 ACATCTTAATTATTAACATCCGTGTGTT 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80973479085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5