BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475880
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24510.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 436 1e-121
AT1G67760.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 283 2e-75
> AT1G24510.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr1:8685271-8688227 REVERSE LENGTH=1967
Length=1967
Score = 436 bits (236), Expect = 1e-121
Identities = 318/357 (89%), Gaps = 7/357 (2%)
Strand=Plus/Plus
Query 266 AGACTGTGAATCGATGCAAGCGCAG-TTAGCTGAGATTGCTGTGAAGGTGGTTCTTGCTG 324
||| ||||||||||||||||||||| ||||||||||||||||| || | |||||||||||
Sbjct 641 AGATTGTGAATCGATGCAAGCGCAGCTTAGCTGAGATTGCTGTTAAAGCGGTTCTTGCTG 700
Query 325 TTGCTGATTTAGAGAGGAAGGATGTTAATTTGGATCTGAT-AAAGGTAGAAGGAAAAGTT 383
|||||||||||||||||| ||||||||| || |||||||| |||| |||| || ||||||
Sbjct 701 TTGCTGATTTAGAGAGGAGGGATGTTAACTTAGATCTGATCAAAG-TAGAGGGGAAAGTT 759
Query 384 GGGGGTAAGCTTG-AGGGCCCTGAGCTTATATATGGGATTTTGATCGACAAAGACATGAG 442
||||| ||| ||| ||| | |||||||||| ||||| || |||| |||||||| |||||
Sbjct 760 GGGGGAAAG-TTGGAGGACACTGAGCTTATTTATGGAATACTGATTGACAAAGATATGAG 818
Query 443 CCATCCGCAAATGCCAAAGCAAATTGCAGATGCTCACATTGCTATTTTGACTTG-CCCTT 501
|||||||||||||||||||| |||| |||||| |||||||| ||||||||||| |||||
Sbjct 819 TCATCCGCAAATGCCAAAGCAGATTGAAGATGCCCACATTGCCATTTTGACTTGTCCCTT 878
Query 502 TTGAGCCACCGAAACCAAAGACAAAGCATAAGGTGGACATTGATACAGTGGAGAAGTTTG 561
| ||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 879 T-GAGCCACCGAAGCCGAAGACTAAGCATAAGGTGGACATTGATACAGTGGAAAAGTTTG 937
Query 562 AGACTTTGCGCAAGCAAGAACAGGAATATTTTGATGAGATGGTTCAAAAGTGCAAGG 618
|||| |||||||||||||| ||| ||||||| ||||||||||| |||||||||||||
Sbjct 938 AGACATTGCGCAAGCAAGAGCAGCAATATTTCGATGAGATGGTACAAAAGTGCAAGG 994
Score = 206 bits (111), Expect = 4e-52
Identities = 143/158 (91%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 114 TTCATTATACTGAGAGAGCAAGATCAAAAGACTCGTCGTA-AGGGCATCGATGCTCA-AA 171
||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||
Sbjct 160 TTCATTATACTGAGAGAGCAAGATCAAAAGACTCGTCTTAGAGGA-ATCGATGCTCAGAA 218
Query 172 AGGCCAACATTGCCGCTGGTAAAGCCGTGGCTCGGATCCTCCGTTCCTCTCTTGGTCCCA 231
|| |||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 219 AG-CCAATATCGCCGCTGGTAAAGCCGTGGCTCGGATCCTTCGATCCTCTCTTGGACCCA 277
Query 232 AGGGCATGGAAAAAATGCTTCAAGGACCTGACGGAGAC 269
| || ||||| || ||||||||||||||||||||||||
Sbjct 278 AAGGAATGGATAAGATGCTTCAAGGACCTGACGGAGAC 315
> AT1G67760.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr1:25405580-25406372 REVERSE LENGTH=697
Length=697
Score = 283 bits (153), Expect = 2e-75
Identities = 252/295 (85%), Gaps = 26/295 (9%)
Strand=Plus/Plus
Query 1 TTTTGAATCTCAAATCTTCAACACTCTTCTTCTTCGAGCTCTCTTCCTTTTACCATCCGA 60
|||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct 2 TTTTGAATCTCAAATCTT-AACACTCTTCTTCTTTGAGCTCTC-ACCTTTTACCATCCGA 59
Query 61 GATCTATTTCGGATCGAACCGCGGAGAGTGAAG-A-C--TGATAG--ATGG----C---- 106
||||| | |||||||||||||| |||||||||| | | ||| | ||| |
Sbjct 60 GATCTGTATCGGATCGAACCGCCGAGAGTGAAGAATCAGAGATGGCTTTGGCTTTCGATG 119
Query 107 A------CTGG-CTTTCATTATACTGAGAGAGCAAGATCAAAAGACTCGTCGTAAGGGCA 159
| | || | ||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 120 AGTTTGGCCGGCCGTTCATTATACTAAGAGAGCAAGATCAAAAGACTCGTCTTAAGGGCA 179
Query 160 TCGATGCTCAAAAGGCCAACATTGCCGCTGGTAAAGCCGTGGCTCGGATCCTCCGTTCCT 219
||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||
Sbjct 180 TCGATGCTCAAAAGGCCAACATTTCCGCTGGTAAAGCAGTGGCTCGGATTCTCCGATCCT 239
Query 220 CTCTTGGTCCCAAGGGCATGGAAAAAA--TGCTTCAAGGACCTGACGGAGACTGT 272
|||| |||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 240 CTCTCGGTCCCAAGGGCATGGAAAAAAAATGCTTCAAGGACCTGACGGAGA-TGT 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5