BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475881
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67770.1 | Symbols: TEL2 | terminal EAR1-like 2 | chr1:25408... 1845 0.0
AT3G26120.1 | Symbols: TEL1 | terminal EAR1-like 1 | chr3:95463... 69.4 1e-10
> AT1G67770.1 | Symbols: TEL2 | terminal EAR1-like 2 | chr1:25408043-25410153
FORWARD LENGTH=1584
Length=1584
Score = 1845 bits (999), Expect = 0.0
Identities = 1428/1619 (88%), Gaps = 94/1619 (6%)
Strand=Plus/Plus
Query 1 ATGTCAGTAACCGGACCATTCAGTCACCCAAGAAACCTTAACCCAACAGCTCCGGAGTTC 60
||||| || |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1 ATGTCTGTCACCGGACCATTCAGTCACCCAACAAACCTTAACCCAACAGCTCCGGCGTTC 60
Query 61 TTCCCGGCG----------A-C-AAACCAAAACCCCTTCTTTATTCCGACAAGA----T- 103
|| |||||| | | |||||||||||||| ||| |||||||||||| |
Sbjct 61 TTTCCGGCGATAAACCAACACCAAAACCAAAACCCCTCCTTAATTCCGACAAGATTCTTC 120
Query 104 -T--CT-A----cct-c-cctccgcctcct---cctccgccg---tacctttctt-ttt- 145
| || | ||| | ||||| |||||| || |||||| ||| |||||| |||
Sbjct 121 CTCCCTCATCCCCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCTATACTTTTCTTATTTC 180
Query 146 tccctctc-cctcctcctcctcctcctcATCTTCCACCGACTTCAATAACACCGACCAGA 204
|| ||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 181 TCTCTCCCTCCTCCTCCTCCTCCTCCTCATCTTCCACCGACTTCAGTAACACCAACCAGA 240
Query 205 GCCGTGATGTTATTACCAGTCCCAGCTGA-CGTCACCGAGACATCTCTAAGACGAGACAT 263
|||||||||||||||| |||||||||| | |||||| |||||||||||||||||||||||
Sbjct 241 GCCGTGATGTTATTACAAGTCCCAGCT-ACCGTCACTGAGACATCTCTAAGACGAGACAT 299
Query 264 GGAACTGTTCGGTGAAGTCCGTGGAGTCCAAATGGAAAGAGTAGATGAAGGAATCGTGAC 323
|||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 300 GGAACTATTCGGTGAAGTCCGTGGAGTCCAAATGGAAAGAGCACATGAAGGAATCGTGAT 359
Query 324 CGTCCATTTCTACAATCTAAGAAACTCACAAAGAGCTTTGAACGAGATACGTTACCGTCA 383
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 360 TTTCCATTTCTACAATCTAATAAACTCACAAAGAGCTTTTAACGAGATACGTTACCGTCA 419
Query 384 CATG---C-A-A-GAACAAGAACAACATCTCCAATTCACGACGGCGCGTGGACTCGTCTC 437
|||| | | | |||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct 420 CATGCAACAACAGGAACAACAACAACATTTCCACTTCACGACGGCGCGTGGACTCGTCTC 479
Query 438 CGGCCATTCTCTGTGGGCCCATTTCGTGTTTCCTCAACTCAATGCTGTTCCCGAAGGAAA 497
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 CGGTCATTCTCTTTGGGCCCATTTCGTGTTTCCTCAACTCAATGCTGTTCCTGAAGGAAA 539
Query 498 CAATCAAGGCTCACTTGTGATTATGAACTTAGAACCCACCGTCTCTTCCACAACTCTCCG 557
|||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 540 CAATCAAGGCTCTCTTGTCATTATGAACTTAGAACCCACCGTCTCTTCCTCAACTCTCCG 599
Query 558 TCACATTTTCCAAGTTTATGGAGAAGTGAAGCAAGTGAGAGAGACACCGTATAAGAGAGA 617
||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 600 TCACATTTTCCAAGTTTATGGAGAAGTGAAGCAGGTGAGAGAGACGCCGTGTAAGAGAGA 659
Query 618 ACAGAGATTCGTTGAGTTCTTTGACGTTAGAGACGCCGCAAAAGCTCTTCGTGTAATGAA 677
||| ||||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 660 ACAAAGATTTGTGGAGTTTTTTGACGTTAGAGACGCTGCAAAAGCTCTCCGTGTAATGAA 719
Query 678 CGGAAAAGTTATCTCCGGTAAACCAATGGTTATCCAGTTTAGCCGTCCCGGTGGTTTAAC 737
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 CGGAAAAGTTATCTCCGGTAAACCAATGGTTATCCAGTTTAGTCGTCCCGGTGGTTTAAC 779
Query 738 AAAGAAACTCTTCCTCGCTTCACGCTTCCATAAAAACTTCATCTTTAACAAC-AACCACC 796
|||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 780 CAAGAAACTCTTCTTCGCTTCACACTTCCATAAAAACTTCATCTTTAACAACGAAC-ACC 838
Query 797 -TCTATCATCCGCCGCCGCCACCACC-----GA-TGGTGAAGTTGAATAATCAAATGTAC 849
| ||| |||| ||||| |||||||| || ||||||||| | ||| || |||||||
Sbjct 839 AT-TATTATCCACCGCCACCACCACCATCACGAATGGTGAAGTCGGATATTCTAATGTAC 897
Query 850 GAGCAACAACGgaagaacaataacaagaagaagaagaagaagcttaagaagtttataaag 909
||||||||| || || |||||||||||||||| | | | | | || |
Sbjct 898 AAGCAACAAC--AA-AA---------GAAGAAGAAGAAGAAG-T-ATG---T--A-AA-G 936
Query 910 aagaaTC--GGTTTGATGCTCACTTCATAATAAACGCAAACGCTATCGCCGGCGGCGAGT 967
||||||| ||| ||| || | ||||| ||||||| |||||||||| ||||||| ||||
Sbjct 937 AAGAATCTTGGT--GATCCTTATTTCATGATAAACGAAAACGCTATCACCGGCGGAGAGT 994
Query 968 TCAGAGACGGAAGAACCACCGTGATGATCAAGAACATCCCAAACAAGTACACACAGAAGC 1027
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 995 TCAGAGACGGAAGAACCACCGTGATGATCAAGAACATCCCTAACAAGTACACACAGAAGC 1054
Query 1028 TGCTTTTGAATATGTTGGACACACATTGTAACGACTGTAACCAAAAG-GTAATCAAAGAA 1086
|||||||||| |||||||||||||||||||| || |||||||||| | ||||||||||||
Sbjct 1055 TGCTTTTGAAGATGTTGGACACACATTGTAAAGATTGTAACCAAA-GTGTAATCAAAGAA 1113
Query 1087 GGGAACAAAACTCCTATGTCTTCTTATGACTTTGTCTATCTCCCGATTGATTTCAGCAAC 1146
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1114 GGGAACAAAACTCCTATGTCTTCTTATGACTTTGTCTACCTCCCCATTGATTTCAGCAAC 1173
Query 1147 AAATGCAATGTGGGATATGGGTTTGTGAATATGACATCACCAGAAGCAGTGTGGAGACTT 1206
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1174 AAAAGCAATGTGGGATATGGGTTTGTGAACATGACATCACCAGAAGCAGTGTGGAGACTT 1233
Query 1207 TACAAGACCTTTCATAATCAACATTGGGGAGATTTCA--AC-ACTAGAAAGATCTGTGAA 1263
||||||| |||||| |||||||||||| ||||||||| || |||||||||||||||||
Sbjct 1234 TACAAGAGCTTTCACAATCAACATTGGAGAGATTTCACCACCACTAGAAAGATCTGTGAG 1293
Query 1264 GTCACTTATGCTCGAATCCAGGGTCTTGAGTCGTTAAAGAAACATTTCAAGAACGCAAAA 1323
|||||||||||||| ||||||||||||||||| |||| | ||||||||||||||| |
Sbjct 1294 GTCACTTATGCTCGTATCCAGGGTCTTGAGTCATTAAGGGAACATTTCAAGAACGTTAGG 1353
Query 1324 CTA-CTAGGAGTAGAGATGGAGGAGTACATGCCGGTTGTTTTCTCGCCGCCGCGTGATGG 1382
||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1354 CTAGC-AGGAGTAGAGATAGACGAGTACATGCCGGTTGTTTTCTCGCCGCCGCGTGATGG 1412
Query 1383 ACGGTTGTTAC-GGAAGCCTGTAGCCATTGTTGACCCTTGGGATAAACCGGTGGCTGATC 1441
|||||||| || ||| |||||| || ||||||||||||||||||||||| |||| ||||
Sbjct 1413 ACGGTTGTCACCGGA-GCCTGTGGCTATTGTTGACCCTTGGGATAAACCAGTGGATGAT- 1470
Query 1442 ATGAAGACAGCTGTTGTAGTAACTCACGAGAAGGGTTTGTTGTGTCCGACAAGAAGATGG 1501
|||||||| ||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 1471 --GAAGACAGATGTTGTA--AG-TCACGAGACGGGTTTGTTGTGTCCGACAAGAAGATGG 1525
Query 1502 AAGGAAGTGATGGTTGTAGTTGTTGTCTTGGTGAGAGAATCGAAACCGGCGGCGTTTGA 1560
|||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||
Sbjct 1526 TAGGAAGTGATGGTTGTGGTTTTTGTCTTAGTGAGAGAATCGAAAACGGCGGCGTTTGA 1584
> AT3G26120.1 | Symbols: TEL1 | terminal EAR1-like 1 | chr3:9546398-9549453
FORWARD LENGTH=2056
Length=2056
Score = 69.4 bits (37), Expect = 1e-10
Identities = 85/108 (79%), Gaps = 4/108 (4%)
Strand=Plus/Plus
Query 231 TGACGTCACCGAGACAT-CTCTAAGACGAGACATGGAACTGTT-CGGTGAAGTCCGTGGA 288
|||||| |||||| | | | | ||||| ||| |||| | || ||| || || |||||
Sbjct 345 TGACGTAACCGAGTC-TACGGTGAGACGTGACTTGGAGGT-TTACGGCGACGTTCGTGGC 402
Query 289 GTCCAAATGGAAAGAGTAGATGAAGGAATCGTGACCGTCCATTTCTAC 336
|| |||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 403 GTGCAAATGGAGAGAATCTCTGAAGGAATCGTGACCGTCCATTTCTAC 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5