BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475882
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67780.1 | Symbols: | Zinc-finger domain of monoamine-oxida... 1709 0.0
AT1G67270.1 | Symbols: | Zinc-finger domain of monoamine-oxida... 1498 0.0
> AT1G67780.1 | Symbols: | Zinc-finger domain of monoamine-oxidase
A repressor R1 protein | chr1:25412816-25415530 FORWARD
LENGTH=1539
Length=1539
Score = 1709 bits (925), Expect = 0.0
Identities = 1056/1119 (94%), Gaps = 9/1119 (1%)
Strand=Plus/Plus
Query 469 AATGATGATTTTATGGAAGGTAGTAGTGGGAATAGTGATTCTGTTTCTGGGACAGATGTT 528
|||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 427 AATGATGATTCTATGGAAGGTAGTAGTGGCAATAGTGATTCTGTTTCGGGGACAGATGTT 486
Query 529 GAAGTAGCTGATGTTGCCAAGGAGAATAAAAAAGTGGTGGGCAAGAGCAAGAAAGCCAAA 588
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 487 GAAGTAGCTGATGTTGCCAAGGATAAGAAAAAAGTGGTGGGCAAGAGCAAGAAAGCCAAT 546
Query 589 GCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCAACTGCCACAGGGTCTAAGC 648
|||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 547 GCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCAACTTCCTCAGGGTATAAGC 606
Query 649 TTGAATTCTGTTTCAGGCATTGTTATACCAACTGAAGAAGCTGGAAATGTATTCCAGCTT 708
|||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTGATTTCTGTGTCAGGCGTTGTTATACCAACTGAAGAAGCTGGAAATGTATTCCAGCTT 666
Query 709 TTTGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGATTTGAAGGAAGGACAAGCTGAAACT 768
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 667 TTCGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGAGTTGAAGGAAGGACAAGCTGAAACT 726
Query 769 GTTGTTCGTGAGCTCTTCTCATGTGGGCGTAACACAAGGAGACAACAGTACTGCTCTATT 828
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 727 GTTGTCCGTGAGCTCTTCTCATGTGGGCGTAACACAAGGAGACAACAATACTGCTCTATT 786
Query 829 ATCCAGCTGATGATCCAATTGTTGGATCTAATATCACAGGATAGAGAAATGTCCCTGTCT 888
||||||||||||||||||||||||||| |||||||| |||||||||| |||||| |||||
Sbjct 787 ATCCAGCTGATGATCCAATTGTTGGATTTAATATCAAAGGATAGAGAGATGTCCTTGTCT 846
Query 889 CTAAGTGTATCTGACAGCAGTTGGTTCACTGCTCTTGGAGAGATCTTATTGCAGTCAGAA 948
|||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 847 CTAAGTGTGTCTGACA--A-TTGGTTCACTGCTCTTGGAGAGATCCTATTGCAGTCAGAA 903
Query 949 TTTTTGAGTGATGTGTTCCCACCTGAAACTTTT-AAAGTAGGTGTTGCTGAGTATGAGAA 1007
|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 904 GTTTTGAGTGATGAGTTCCCACCTGAAACTTTTGAAA-CAGGTGTTGCTGAGTATGAGAA 962
Query 1008 GATGGATGCATCAAAAAGGCTCAAGCTTCTCAACTTTGTATGTGATGAATCACTTAGCAC 1067
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 963 GATGGATGCATCAAGAAGGCTCAAGCTTCTCAACTTCGTATGTGATGAATCACTTAGCAC 1022
Query 1068 CTGTGCAATGAGGAATTGCATTAAGAGCCAGAGTACAGAGTGTAAAGCAAATAACAACGA 1127
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TTGGGCAATGAGGAATTGCATTAAGAGCCAGAGTACAGAGTGTAAAGCAAATAACAACGA 1082
Query 1128 AGCTAAAAGAAAGGCCGCAACCGCAAAGGAAAAGGAGAAGCAGCTCAAACAGAAGTTGCA 1187
||||||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 1083 AGCTAAAAGAAAGGCTGCAGCTGCAAAGGAAAAGGAGAAGCAGCTTAAACAGAAGTTGCA 1142
Query 1188 AGGTGATGTTGCCAAAGCCATTATGAAGAAAAACGGAGCTCCATTGTCCATTGAGGAACA 1247
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 AGGTGATCTTGCCAAAGCCATTATGAAGAAAAACGGAGCTCCATTGTCCATTGAGGAACA 1202
Query 1248 CAACGCAATTCTGTCTCAAATAAGAGCTGAAGCTAAAGAAGCTCATGATGAAATGATGGA 1307
||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1203 CAATGAAATTCTGTCTCAAATAAGAGCTGAAGCTAAAGAAGCTCATGATGGAATGATGGA 1262
Query 1308 GGCAAAGGGCATGGCAGCTGGAACGACGCGTATATGTGATGCGCGTAGAACTGAACCAAT 1367
|||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1263 GGCAAAGGGCATAACATCTGGAATGACGCGTATATGTGATGCGCGTAGAACTGAACCAAT 1322
Query 1368 CATGGTGGAAGATAATGGTCTTGTTCTCTGGAAATTGAACTGCTATAAAGAAGAACCAAA 1427
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1323 CATGGTGGAAGATAATGGTCTTGTTCTCTGGAAATTGAACTGCTATGATGAAGAACCAAA 1382
Query 1428 TTTTTTGCTTCAAGATTTAGGAACATTTGATGGTTTATGTCCACATGAAAAATGGTTAGC 1487
|||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1383 GTTTTTGCTCCAAGATCTAGGAACATTTGATGGTTTATGTTCACATGAAAAATGGTTAGC 1442
Query 1488 TTTTAAGCCTGAGCAGAAACCAGACATAGAGAACTATATCTCTTACAAGAGGAGGAAAGT 1547
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1443 TTTTAAGCCTGAGCAGAAACCAGATATAGAGAACTATATCTCTTACAAGAGGAGGAAGGT 1502
Query 1548 GATGCAAATGCA--GAAGAATACAATTGTAGAAGTATAA 1584
|||||||| || |||||| |||| ||| | || ||||
Sbjct 1503 GATGCAAA--CATTGAAGAACACAAATGTGGTAGCATAA 1539
Score = 649 bits (351), Expect = 0.0
Identities = 387/405 (96%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 16 GAGAAACCATCGAAGCGCACCACTAATCCTGGTGTTAGAGTCGTCGGAGGAAGAATCTAC 75
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 22 GAGAAACCATCGAAGCGTACCACTAATCCCGGCGTTAGAGTCGTCGGAGGAAGAATCTAC 81
Query 76 GATTCCAGTAATGGCAAAACCTGTCACCAGTGTCGACAGAAGACGATGGACTTCGTTGCG 135
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 82 GATTCCAGTAATGGCAAAACCTGTCACCAGTGTCGACAGAAGACTATGGACTTCGTTGCG 141
Query 136 TCGTGCAAGGCAATGAAGAAGGACAAGCAATGTACCATTAATTTTTGTCATAAGTGTTTA 195
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 142 TCTTGCAAGGCTATGAAGAAGGATAAGCAATGTACCATTAATTTTTGTCATAAGTGTTTA 201
Query 196 ATAAACAGGTATGGTGAGAATGCAGAAGAAGTAGCAAAGTTGGATGACTGGATGTGTCCT 255
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||
Sbjct 202 ATAAACAGGTATGGTGAGAATGCAGAAGAAGTAGCGAAGTTAGATGATTGGATATGTCCT 261
Query 256 CAGTGTAGAGGCATCTGCAATTGCAGTTTTTGCAGGAAGAAACGAGGGCTAAATCCTACT 315
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 262 CAGTGTAGAGGCATCTGCAATTGCAGTTTTTGCAGGAAGAAACGAGGACTAAATCCCACC 321
Query 316 GGGATATTAGCACACAAAGCTAAAGCCAGTGGATTAGCTTCGGTCTCTATGCTTCTTGAA 375
|||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 322 GGGATATTGGCACACAAAGCTAAAGCTAGTGGATTAGCTTCAGTATCTATGCTTCTTGAA 381
Query 376 GTTGAGGGGCATGATAACTTTGCTTATCAGAAGAAGCCAAAACTG 420
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GTTGAGGGGCATGATAACTTTGCTTATCAGAAGAAGCCAAAACTG 426
> AT1G67270.1 | Symbols: | Zinc-finger domain of monoamine-oxidase
A repressor R1 protein | chr1:25183177-25185939 REVERSE
LENGTH=1772
Length=1772
Score = 1498 bits (811), Expect = 0.0
Identities = 1313/1549 (85%), Gaps = 59/1549 (4%)
Strand=Plus/Plus
Query 40 AATCCTGGTGTTAGAGTCGTCGGAGGAAGAATCTACGA-TTCCAGTAATGGCAAAACCTG 98
||||| ||||||||||| |||||| |||||| || || | ||| ||||||||| | ||
Sbjct 168 AATCCCGGTGTTAGAGTTGTCGGAAAAAGAATTTATGACTCCCA-AAATGGCAAATCATG 226
Query 99 TCACCAGTGTCGACAGAAGACGATGGACTTCGTTGCGTCGTGCAAGGCAATGAAGAAGG- 157
||||||||||||||||||||| | ||||| | ||| |||||||||||||| || |||
Sbjct 227 TCACCAGTGTCGACAGAAGACTCTTGACTTTGCTGCACCGTGCAAGGCAATG-AGGAGGA 285
Query 158 ACAAGCAATGTACCATTAATTTTTGTCATAAGTGTTTAAT-AAACAGGTATGGTGAGAAT 216
| |||| |||| |||| || |||||| | || || || || || |||||||||||| |||
Sbjct 286 AGAAGCTATGTCCCATAAAGTTTTGTTACAAATGCTT-ATCAATCAGGTATGGTGAAAAT 344
Query 217 GCAGAAGAAGTAGCAAAGTTGGATGACTGGATGTGTCCTCAGTGTAGAGGCATCTGCAAT 276
|||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||| ||
Sbjct 345 GCAGAAGAAGTAGCAAAGTTGGATGATTGGATATGTCCTCTGTGCAGAGGCATCTGC-AT 403
Query 277 -TGCAGTTTTTGCAGGAAGAA--ACGAGGGCTAAATCCTACTGGGATATTAGCACACAAA 333
|| ||| | |||| ||| || | ||| ||| | || |||||||| || |||||| ||
Sbjct 404 CTGTAGTGTATGCA-GAA-AAGCCCAAGGACTAGAGCCCACTGGGATTTTGGCACACGAA 461
Query 334 GCTAAAGCCAGTGGATTA-GCTTCGGTCTCTATGCTTCTTGAAGTTGAGGGGCATGATAA 392
||||||||| ||||| || | || |||| | ||||||||||| |||||||||||||||
Sbjct 462 GCTAAAGCCCGTGGA-TATTCCTCAGTCTATGCGCTTCTTGAAGCTGAGGGGCATGATAA 520
Query 393 CTTTGCTTATCAGAAGAAGCCAAAACTGGTACT-AAAAACAATTACACAAATCTTAATTT 451
||||||||||||||||| ||| |||||||||| ||||| ||||| ||||||| | |||
Sbjct 521 GTTTGCTTATCAGAAGAAACCAGAACTGGTACTGAAAAA-AATTATACAAATCGTGGTTT 579
Query 452 TTGTGATCTTAGCTCCAAATGATGATTTTATGGAAGGTAGTAGTGGGAATAGTGATTCTG 511
| || || | ||| || | || |||||||||||| | |||||||| ||||
Sbjct 580 TAGT-TTC-T-GCT-----TG--CA----AT-GAAGGTAGTAGTAGCAATAGTGAATCTG 624
Query 512 TTTCTGGGACAGATGT-TGAAGTAGCT-GATGTTGCCAAGGAGAATAAAAAAGTGGTGGG 569
|| | |||||||| || ||| || | |||||| |||||||||| || ||||||||||
Sbjct 625 TTCCAGGGACAGAAGTGGGAA-TA-TTAGATGTTCCCAAGGAGAAGAAGAAAGTGGTGGA 682
Query 570 CAAGAGCAAGAAAGCCAAAGCCACTCACAAGCTGAAAGAGGAGATTCAGTTTGAGGCTCA 629
|||||| |||| ||||||| ||| | |||| |||||||||||||||||| ||||||||||
Sbjct 683 CAAGAGGAAGAGAGCCAAACCCAGTGACAAACTGAAAGAGGAGATTCAGCTTGAGGCTCA 742
Query 630 ACTGCCACAGGGTCTAAGCTTGAATTCTGTTTCAGGCATTGTTATACCAACTGAAGAAGC 689
||| || ||||| ||||||||| || ||||||| |||||| ||||||||||||||||||
Sbjct 743 ACTTCCTGAGGGTATAAGCTTGACTTGTGTTTCACGCATTGATATACCAACTGAAGAAGC 802
Query 690 TGGAAATGTAT-TCCAGCTTTTTGAGTTTTGCTCAGCCTTTGGAAAGGCTCTTGATTTGA 748
||||||||||| || ||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct 803 TGGAAATGTATGTC-AGCTTTTCGAGTTTTGCTCAGCCTTTGGAAAGGCACTTGCTTTGA 861
Query 749 AGGAAGGACAAGCTGAAACTGTTGTTCGTGAGCTCTTC-TCATGTGGGCGTAACACAAGG 807
|||||||||| ||||||||| |||| |||||||| || | |||||||||||||||||||
Sbjct 862 AGGAAGGACATGCTGAAACTATTGTCCGTGAGCTGTTTAT-ATGTGGGCGTAACACAAGG 920
Query 808 AGACAACAGTACTGCTCTATTA-TCCAGCTGATGATCCAATTGTTGGATCTAATATCACA 866
|||||||| ||||||||||||| || || |||||||||| ||||||||| |||||||| |
Sbjct 921 AGACAACAATACTGCTCTATTACTC-AGATGATGATCCAGTTGTTGGATTTAATATCAAA 979
Query 867 GGATAGAGAAATGTCCCTGTCTCTAAGTGTATCTGACAGCAGTTGGTTCACTGCTCTTGG 926
||||||||| ||||| |||||||||||| | | ||||||||||||||||| ||| | ||
Sbjct 980 GGATAGAGAGATGTCTTTGTCTCTAAGTGCAACGGACAGCAGTTGGTTCACGGCTATAGG 1039
Query 927 AGAGATCTTATTGCAGTCAGAATTTTTGAGTGATGTGTTCCCACCT-GAAACTTTTAAAG 985
||||||| ||| | |||||||| |||||||||||| | |||||| | ||||||||| ||
Sbjct 1040 AGAGATCCTATCGAAGTCAGAAGTTTTGAGTGATGAGCTCCCAC-TAGAAACTTTTGTAG 1098
Query 986 TAGGTGTTGCTGAGTATGAGAAGATGGATGCATCAA-AAAGGCTCAAGCTTCTCAACTTT 1044
|||||||||| ||||||||||||| ||||||||| |||| ||||||||||| || |||
Sbjct 1099 GGGGTGTTGCTGCGTATGAGAAGATGAATGCATCAAGAAAG-CTCAAGCTTCTAAA-TTT 1156
Query 1045 GT-ATGTGATGAATCACTTAGCACCTGTGCAATGAGGAATTGCATTAAGAGCCAGAGT-A 1102
| ||||||||||||||||||||| || ||||||||||||| ||| || ||||| | | |
Sbjct 1157 CTTATGTGATGAATCACTTAGCACATGGGCAATGAGGAATTACATAAATAGCCAAACTGA 1216
Query 1103 CAGAGTGTAAAGCAAAT-AACAACGAAGCTAAA-AGAAAGGCCGCAACCGCAAAGGAAAA 1160
||||||| || || || || ||||||||| | |||||| ||| |||||||| ||||
Sbjct 1217 -AGAGTGTGGAG-AACGGAAAAAGGAAGCTAAACA-AAAGGCTGCAGCCGCAAAGCAAAA 1273
Query 1161 GGAGAAGCAGCTCAAACAGAAGTTGCAAGGTGATGTTGCCAAAGCCATTATGAAGAAAAA 1220
|||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||
Sbjct 1274 GGAGAAGCAGCTCAAACAGAAGATGCAAGGTGAGGTTGCCAAATCCATTATGGAGAAAAA 1333
Query 1221 CGGAGCTCCATTGTCCATTGAGGAACACAACGCAATTC-TGTCTCAAATAAGAGCTGAAG 1279
||||||||||||||| ||||||||||||||| |||| | ||||||||||||||| |||||
Sbjct 1334 CGGAGCTCCATTGTCTATTGAGGAACACAACTCAAT-CGTGTCTCAAATAAGAGATGAAG 1392
Query 1280 CTAAAGAAGCTCATGATGAAATGATGGAGGCAAAGGGCATGGCAGCTGGAACGACGCGTA 1339
|||||||||||||||| |||||||||||||||||||||||| | || || ||||| ||
Sbjct 1393 CTAAAGAAGCTCATGAAGAAATGATGGAGGCAAAGGGCATGAAATCTAAAATGACGCTTA 1452
Query 1340 TATGTGATGCGCGTAGAACTGAACCAATCATGGTGGAAGATAATGGTCTTGTTCTCTGGA 1399
||||||||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||
Sbjct 1453 TATGTGATGCGCGTAGAACGGAACCAATCATGTTGGATGATAATGGTTTTGTTCTCTGGA 1512
Query 1400 AATTGAACTGCTATAAAGAAGAACCAAATTTTTT-GCTTCAAGATTTAGGAACATTTGAT 1458
||||||| || | | ||||||||| || |||||| |||||||||| ||||||||||||||
Sbjct 1513 AATTGAAGTGTTTTGAAGAAGAAC-AATTTTTTTTGCTTCAAGATCTAGGAACATTTGAT 1571
Query 1459 GGTTTATGTCCACATGAAAAATGGTTAGCTTTTAAGCCTGAGCAGAAACCAGACATAGAG 1518
| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1572 GATTTATGTCCACATGAAAGATGGTTAGCTTTTAAACCTGAGCAGAAACCAGAGATAGAG 1631
Query 1519 AACTATATCTCTTACAAGAGG-AGGAAAGTGATGCAAATGCAGAAGAAT 1566
|| |||||||||| |||||| | |||| |||||||||| || ||||||
Sbjct 1632 AA-TATATCTCTTGTAAGAGGTAAGAAACTGATGCAAATACAAAAGAAT 1679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5