BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475883

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G67785.1 | Symbols:  | unknown protein; Has 30 Blast hits to...   351    1e-96


> AT1G67785.1 | Symbols:  | unknown protein; Has 30 Blast hits 
to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:25416069-25416984 REVERSE 
LENGTH=223
Length=223

 Score =  351 bits (190),  Expect = 1e-96
 Identities = 212/223 (95%), Gaps = 0/223 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGAAGGTTTTGACCTACTTTGGCATGACATTGGCCGCTTTCGCCTTTTGGCAATCC  60
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGAAGGTTTTGACTTACTTTGGGATGACATTGGCCGCTTTCGCCTTTTGGCAATCC  60

Query  61   ATGGACAAAGTCCATGTCTGGATCGCTCTTCATCAAGACGAGAAGCAAGAAAGAATGGAG  120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGGACAAAGTTCATGTCTGGATCGCTCTTCATCAAGACGAGAAGCAAGAAAGAATGGAG  120

Query  121  AAGGAAGCGGAGGTAAGGCGGGTTAGAGCAGAGCTGATACGGAAAGCTAGAGAAGAGGAT  180
            |||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct  121  AAGGAAGCGGAGGTAAGGCGAGTTAGAGCAGAGCTGCTACGGAAAGCTAGAGAGGAGGAT  180

Query  181  CCTCTTGCCTGATCTTCTTCTTCGGTTATGCTTTTGGGTTTCT  223
            || |||||||||||||||||| | || |||||||||||| |||
Sbjct  181  CCACTTGCCTGATCTTCTTCTGCAGTCATGCTTTTGGGTGTCT  223



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10003282051


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5